Wall clock time and date at job start Tue Mar 31 2020 19:26:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 110.21984 * 2 1 4 4 C 1.53000 * 109.47246 * 300.70005 * 3 2 1 5 5 C 1.50700 * 109.47199 * 179.97438 * 4 3 2 6 6 O 1.21280 * 120.00121 * 0.02562 * 5 4 3 7 7 N 1.34779 * 119.99777 * 179.97438 * 5 4 3 8 8 C 1.46494 * 119.99874 * 180.02562 * 7 5 4 9 9 C 1.50700 * 109.47256 * 180.02562 * 8 7 5 10 10 C 1.29450 * 117.69518 * 95.00213 * 9 8 7 11 11 C 1.50322 * 123.65465 * 180.85972 * 10 9 8 12 12 N 1.47007 * 109.16424 * 349.02107 * 11 10 9 13 13 C 1.36933 * 121.37470 * 222.96734 * 12 11 10 14 14 H 1.08005 * 119.99623 * 155.35229 * 13 12 11 15 15 C 1.38812 * 120.00434 * 335.35091 * 13 12 11 16 16 N 1.31615 * 120.00028 * 159.82353 * 15 13 12 17 17 Si 1.86798 * 119.99654 * 339.82988 * 15 13 12 18 18 H 1.48494 * 109.47443 * 88.40370 * 17 15 13 19 19 H 1.48498 * 109.46900 * 208.40302 * 17 15 13 20 20 H 1.48507 * 109.47121 * 328.39893 * 17 15 13 21 21 C 1.47339 * 117.24732 * 42.94807 * 12 11 10 22 22 C 1.49968 * 117.69660 * 274.74216 * 9 8 7 23 23 C 1.54476 * 110.24307 * 121.93232 * 2 1 3 24 24 C 1.54628 * 101.76769 * 93.58744 * 23 2 1 25 25 C 1.51272 * 104.19697 * 24.79169 * 24 23 2 26 26 O 1.21286 * 124.94284 * 163.78384 * 25 24 23 27 27 N 1.34420 * 110.11768 * 343.75738 * 25 24 23 28 28 H 1.08997 * 109.46964 * 298.06958 * 1 2 3 29 29 H 1.09002 * 109.47410 * 178.06741 * 1 2 3 30 30 H 1.09006 * 109.46795 * 58.07050 * 1 2 3 31 31 H 1.09002 * 109.47040 * 60.69581 * 3 2 1 32 32 H 1.08996 * 109.47485 * 180.70022 * 3 2 1 33 33 H 1.08996 * 109.47142 * 299.99903 * 4 3 2 34 34 H 1.09004 * 109.46992 * 59.99962 * 4 3 2 35 35 H 0.97005 * 120.00127 * 0.02562 * 7 5 4 36 36 H 1.08996 * 109.47249 * 300.00377 * 8 7 5 37 37 H 1.08996 * 109.47157 * 60.00356 * 8 7 5 38 38 H 1.08002 * 118.17362 * 0.83517 * 10 9 8 39 39 H 1.09007 * 109.52392 * 108.92741 * 11 10 9 40 40 H 1.09003 * 109.52653 * 229.05250 * 11 10 9 41 41 H 0.97008 * 119.99442 * 180.02562 * 16 15 13 42 42 H 1.09001 * 109.77881 * 57.81056 * 21 12 11 43 43 H 1.09005 * 109.77705 * 178.56068 * 21 12 11 44 44 H 1.09002 * 109.31301 * 281.28920 * 22 9 8 45 45 H 1.09000 * 109.31400 * 40.71174 * 22 9 8 46 46 H 1.09010 * 110.96839 * 211.70056 * 23 2 1 47 47 H 1.09000 * 110.97556 * 335.42437 * 23 2 1 48 48 H 1.08997 * 110.49067 * 143.47694 * 24 23 2 49 49 H 1.09003 * 110.48172 * 265.98713 * 24 23 2 50 50 H 0.96999 * 124.34893 * 179.59547 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0588 1.4357 0.0000 4 6 1.5440 2.1688 -1.2403 5 6 2.0643 3.5831 -1.2400 6 8 2.7772 3.9668 -0.3369 7 7 1.7384 4.4213 -2.2439 8 6 2.2446 5.7960 -2.2438 9 6 1.7375 6.5181 -3.4655 10 6 0.6623 7.2283 -3.3415 11 6 0.0299 7.9871 -4.4746 12 7 0.9520 8.0023 -5.6193 13 6 1.1568 9.1390 -6.3549 14 1 2.0775 9.2679 -6.9046 15 6 0.1812 10.1257 -6.3939 16 7 0.5003 11.3532 -6.7455 17 14 -1.5846 9.7112 -5.9473 18 1 -1.7777 9.8789 -4.4845 19 1 -2.5058 10.6202 -6.6756 20 1 -1.8742 8.3050 -6.3269 21 6 1.6471 6.7439 -5.9423 22 6 2.5173 6.3683 -4.7376 23 6 2.0645 -0.7666 1.2300 24 6 2.2625 -2.1879 0.6542 25 6 2.4508 -1.9641 -0.8300 26 8 2.9073 -2.7795 -1.6031 27 7 2.0379 -0.7301 -1.1674 28 1 -0.3633 0.4835 0.9068 29 1 -0.3634 -1.0271 -0.0347 30 1 -0.3633 0.5435 -0.8722 31 1 1.7124 1.9505 0.8962 32 1 3.1486 1.4215 -0.0126 33 1 1.8903 1.6541 -2.1365 34 1 0.4541 2.1830 -1.2278 35 1 1.1685 4.1143 -2.9664 36 1 1.8980 6.3108 -1.3478 37 1 3.3344 5.7818 -2.2561 38 1 0.1932 7.2780 -2.3699 39 1 -0.9018 7.5007 -4.7637 40 1 -0.1761 9.0097 -4.1581 41 1 -0.1815 12.0427 -6.7724 42 1 0.9168 5.9578 -6.1341 43 1 2.2762 6.8851 -6.8213 44 1 3.3917 7.0182 -4.7032 45 1 2.8445 5.3336 -4.8402 46 1 3.0120 -0.3477 1.5692 47 1 1.3311 -0.7704 2.0364 48 1 3.1484 -2.6542 1.0852 49 1 1.3808 -2.8012 0.8407 50 1 2.0713 -0.3688 -2.0670 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001718035997.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:26:17 Heat of formation + Delta-G solvation = -41.301612 kcal Electronic energy + Delta-G solvation = -28575.954636 eV Core-core repulsion = 24603.543024 eV Total energy + Delta-G solvation = -3972.411612 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -41.17542 -39.86616 -38.20198 -37.59563 -35.21603 -33.56015 -32.94658 -31.84937 -31.26524 -30.46564 -29.84720 -27.48140 -26.27946 -24.38595 -23.56270 -23.19607 -21.29734 -21.24786 -20.85590 -20.16669 -18.07724 -17.68221 -17.03288 -16.61645 -16.26784 -16.05440 -15.82138 -15.43227 -15.28031 -14.61205 -14.52492 -14.31317 -14.11412 -14.07716 -13.86874 -13.53638 -13.35665 -13.20064 -13.06180 -12.84295 -12.73206 -12.57808 -12.19666 -12.10092 -11.94808 -11.75004 -11.54653 -11.54214 -11.36643 -11.14868 -10.90093 -10.41200 -10.33586 -10.26215 -10.09776 -9.89553 -9.59196 -9.55124 -9.15531 -8.71824 -8.51005 -7.08943 -5.99300 -3.34951 2.20829 2.28642 2.46618 2.88696 3.25145 3.27758 3.41794 3.44341 3.76437 3.92952 4.15328 4.36655 4.41969 4.46795 4.59432 4.70996 4.72566 4.78977 4.94403 4.97597 5.01493 5.11528 5.13348 5.20582 5.27175 5.33745 5.36473 5.41904 5.51129 5.56790 5.63636 5.73748 5.78352 5.80232 5.89665 6.05063 6.08926 6.28186 6.32226 6.39260 6.40188 6.49362 6.60865 6.67522 6.93386 7.27427 7.38329 7.84529 7.85049 8.06628 8.26984 8.84957 9.65307 10.03228 11.16796 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.024022 B = 0.001911 C = 0.001903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1165.334260 B =14648.551883 C =14710.557686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.155 3.845 3 C -0.104 4.104 4 C -0.145 4.145 5 C 0.509 3.491 6 O -0.545 6.545 7 N -0.722 5.722 8 C 0.155 3.845 9 C -0.148 4.148 10 C -0.127 4.127 11 C 0.143 3.857 12 N -0.606 5.606 13 C -0.256 4.256 14 H 0.088 0.912 15 C 0.020 3.980 16 N -0.908 5.908 17 Si 0.884 3.116 18 H -0.287 1.287 19 H -0.302 1.302 20 H -0.273 1.273 21 C 0.147 3.853 22 C -0.094 4.094 23 C -0.124 4.124 24 C -0.157 4.157 25 C 0.520 3.480 26 O -0.537 6.537 27 N -0.722 5.722 28 H 0.073 0.927 29 H 0.061 0.939 30 H 0.066 0.934 31 H 0.088 0.912 32 H 0.080 0.920 33 H 0.089 0.911 34 H 0.098 0.902 35 H 0.402 0.598 36 H 0.067 0.933 37 H 0.069 0.931 38 H 0.100 0.900 39 H 0.039 0.961 40 H 0.084 0.916 41 H 0.263 0.737 42 H 0.028 0.972 43 H 0.067 0.933 44 H 0.072 0.928 45 H 0.058 0.942 46 H 0.087 0.913 47 H 0.093 0.907 48 H 0.102 0.898 49 H 0.104 0.896 50 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.754 -24.484 16.667 29.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.068 3.932 3 C -0.143 4.143 4 C -0.185 4.185 5 C 0.296 3.704 6 O -0.422 6.422 7 N -0.374 5.374 8 C 0.032 3.968 9 C -0.148 4.148 10 C -0.147 4.147 11 C 0.018 3.982 12 N -0.331 5.331 13 C -0.384 4.384 14 H 0.106 0.894 15 C -0.178 4.178 16 N -0.551 5.551 17 Si 0.715 3.285 18 H -0.215 1.215 19 H -0.231 1.231 20 H -0.199 1.199 21 C 0.021 3.979 22 C -0.133 4.133 23 C -0.161 4.161 24 C -0.197 4.197 25 C 0.306 3.694 26 O -0.414 6.414 27 N -0.378 5.378 28 H 0.092 0.908 29 H 0.080 0.920 30 H 0.085 0.915 31 H 0.107 0.893 32 H 0.098 0.902 33 H 0.108 0.892 34 H 0.117 0.883 35 H 0.236 0.764 36 H 0.086 0.914 37 H 0.088 0.912 38 H 0.118 0.882 39 H 0.056 0.944 40 H 0.102 0.898 41 H 0.073 0.927 42 H 0.046 0.954 43 H 0.086 0.914 44 H 0.090 0.910 45 H 0.077 0.923 46 H 0.105 0.895 47 H 0.111 0.889 48 H 0.120 0.880 49 H 0.122 0.878 50 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges -0.027 -24.483 16.963 29.785 hybrid contribution -1.405 0.117 -0.491 1.493 sum -1.432 -24.366 16.472 29.446 Atomic orbital electron populations 1.22276 0.93599 1.02821 1.03269 1.21113 0.94297 0.92199 0.85592 1.21666 1.02139 0.92186 0.98261 1.21767 1.02925 0.93143 1.00713 1.20617 0.80603 0.87413 0.81812 1.90711 1.37558 1.77807 1.36145 1.46198 1.52492 1.12838 1.25831 1.20456 0.98992 0.80709 0.96614 1.20588 0.97843 1.00958 0.95448 1.22798 0.96096 0.96364 0.99473 1.20364 0.92487 0.99137 0.86236 1.44431 1.50532 1.07698 1.30388 1.18897 1.01224 0.92984 1.25320 0.89422 1.25232 0.97912 0.95561 0.99119 1.69829 1.33408 1.00450 1.51423 0.87007 0.86786 0.77727 0.76997 1.21485 1.23059 1.19859 1.21032 0.94045 0.87952 0.94916 1.20822 0.98806 1.00024 0.93655 1.22712 1.03082 0.93700 0.96653 1.22359 1.05171 0.98774 0.93394 1.20892 0.76016 0.81473 0.91036 1.90775 1.45396 1.47615 1.57626 1.46456 1.64227 1.15768 1.11358 0.90759 0.91958 0.91543 0.89307 0.90163 0.89222 0.88335 0.76424 0.91442 0.91236 0.88173 0.94358 0.89774 0.92703 0.95439 0.91423 0.90975 0.92347 0.89463 0.88851 0.88005 0.87811 0.75251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.57 8.47 37.16 0.31 -0.26 16 2 C 0.15 0.70 0.87 -130.90 -0.11 0.58 16 3 C -0.10 -0.61 3.71 -26.73 -0.10 -0.71 16 4 C -0.15 -0.88 5.21 -27.88 -0.15 -1.03 16 5 C 0.51 5.29 7.83 -10.98 -0.09 5.21 16 6 O -0.54 -7.81 15.98 5.56 0.09 -7.72 16 7 N -0.72 -7.45 5.55 -61.48 -0.34 -7.79 16 8 C 0.15 2.00 5.66 -5.20 -0.03 1.97 16 9 C -0.15 -2.21 5.22 -100.99 -0.53 -2.74 16 10 C -0.13 -2.11 9.47 -35.78 -0.34 -2.45 16 11 C 0.14 2.98 4.39 -5.10 -0.02 2.95 16 12 N -0.61 -13.92 2.80 -173.56 -0.49 -14.41 16 13 C -0.26 -7.01 10.14 -15.06 -0.15 -7.17 16 14 H 0.09 2.56 8.06 -52.48 -0.42 2.14 16 15 C 0.02 0.58 5.26 -17.43 -0.09 0.49 16 16 N -0.91 -27.48 13.97 55.49 0.78 -26.71 16 17 Si 0.88 21.74 24.17 -169.99 -4.11 17.63 16 18 H -0.29 -6.74 6.48 56.52 0.37 -6.37 16 19 H -0.30 -7.61 7.11 56.52 0.40 -7.21 16 20 H -0.27 -6.55 6.59 56.52 0.37 -6.18 16 21 C 0.15 2.70 6.59 -3.44 -0.02 2.68 16 22 C -0.09 -1.45 5.95 -28.09 -0.17 -1.62 16 23 C -0.12 -0.45 6.20 -25.10 -0.16 -0.60 16 24 C -0.16 -0.78 6.86 -26.75 -0.18 -0.96 16 25 C 0.52 4.50 8.43 -10.86 -0.09 4.40 16 26 O -0.54 -7.19 18.03 5.55 0.10 -7.09 16 27 N -0.72 -4.53 5.39 -46.62 -0.25 -4.78 16 28 H 0.07 0.20 8.14 -51.93 -0.42 -0.22 16 29 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 30 H 0.07 0.23 6.39 -51.93 -0.33 -0.10 16 31 H 0.09 0.55 8.10 -51.93 -0.42 0.13 16 32 H 0.08 0.60 8.10 -51.93 -0.42 0.18 16 33 H 0.09 0.43 6.90 -51.93 -0.36 0.07 16 34 H 0.10 0.43 6.43 -51.93 -0.33 0.10 16 35 H 0.40 3.40 8.46 -40.82 -0.35 3.05 16 36 H 0.07 0.91 7.78 -51.93 -0.40 0.51 16 37 H 0.07 0.94 8.11 -51.93 -0.42 0.52 16 38 H 0.10 1.46 7.73 -52.49 -0.41 1.05 16 39 H 0.04 0.80 6.39 -51.92 -0.33 0.47 16 40 H 0.08 1.94 5.05 -51.93 -0.26 1.67 16 41 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 42 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 43 H 0.07 1.24 7.96 -51.93 -0.41 0.83 16 44 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 45 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 46 H 0.09 0.33 7.91 -51.92 -0.41 -0.09 16 47 H 0.09 0.19 7.89 -51.93 -0.41 -0.22 16 48 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 49 H 0.10 0.38 8.14 -51.93 -0.42 -0.04 16 50 H 0.41 2.36 7.70 -40.82 -0.31 2.05 16 LS Contribution 390.59 15.07 5.89 5.89 Total: -1.00 -35.25 390.59 -8.42 -43.66 By element: Atomic # 1 Polarization: 8.73 SS G_CDS: -8.17 Total: 0.56 kcal Atomic # 6 Polarization: 2.67 SS G_CDS: -1.91 Total: 0.75 kcal Atomic # 7 Polarization: -53.38 SS G_CDS: -0.30 Total: -53.69 kcal Atomic # 8 Polarization: -15.00 SS G_CDS: 0.19 Total: -14.81 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -4.11 Total: 17.63 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -35.25 -8.42 -43.66 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001718035997.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.363 kcal (2) G-P(sol) polarization free energy of solvation -35.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.415 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.664 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds