Wall clock time and date at job start Tue Mar 31 2020 19:26:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 110.21984 * 2 1 4 4 C 1.53000 * 109.47246 * 300.70005 * 3 2 1 5 5 C 1.50700 * 109.47199 * 179.97438 * 4 3 2 6 6 O 1.21280 * 120.00121 * 0.02562 * 5 4 3 7 7 N 1.34779 * 119.99777 * 179.97438 * 5 4 3 8 8 C 1.46494 * 119.99874 * 180.02562 * 7 5 4 9 9 C 1.50700 * 109.47256 * 180.02562 * 8 7 5 10 10 C 1.29450 * 117.69518 * 95.00213 * 9 8 7 11 11 C 1.50322 * 123.65465 * 180.85972 * 10 9 8 12 12 N 1.47007 * 109.16424 * 349.02107 * 11 10 9 13 13 C 1.36933 * 121.37470 * 222.96734 * 12 11 10 14 14 H 1.08005 * 119.99623 * 155.35229 * 13 12 11 15 15 C 1.38812 * 120.00434 * 335.35091 * 13 12 11 16 16 N 1.31615 * 120.00028 * 159.82353 * 15 13 12 17 17 Si 1.86798 * 119.99654 * 339.82988 * 15 13 12 18 18 H 1.48494 * 109.47443 * 88.40370 * 17 15 13 19 19 H 1.48498 * 109.46900 * 208.40302 * 17 15 13 20 20 H 1.48507 * 109.47121 * 328.39893 * 17 15 13 21 21 C 1.47339 * 117.24732 * 42.94807 * 12 11 10 22 22 C 1.49968 * 117.69660 * 274.74216 * 9 8 7 23 23 C 1.54476 * 110.24307 * 121.93232 * 2 1 3 24 24 C 1.54628 * 101.76769 * 93.58744 * 23 2 1 25 25 C 1.51272 * 104.19697 * 24.79169 * 24 23 2 26 26 O 1.21286 * 124.94284 * 163.78384 * 25 24 23 27 27 N 1.34420 * 110.11768 * 343.75738 * 25 24 23 28 28 H 1.08997 * 109.46964 * 298.06958 * 1 2 3 29 29 H 1.09002 * 109.47410 * 178.06741 * 1 2 3 30 30 H 1.09006 * 109.46795 * 58.07050 * 1 2 3 31 31 H 1.09002 * 109.47040 * 60.69581 * 3 2 1 32 32 H 1.08996 * 109.47485 * 180.70022 * 3 2 1 33 33 H 1.08996 * 109.47142 * 299.99903 * 4 3 2 34 34 H 1.09004 * 109.46992 * 59.99962 * 4 3 2 35 35 H 0.97005 * 120.00127 * 0.02562 * 7 5 4 36 36 H 1.08996 * 109.47249 * 300.00377 * 8 7 5 37 37 H 1.08996 * 109.47157 * 60.00356 * 8 7 5 38 38 H 1.08002 * 118.17362 * 0.83517 * 10 9 8 39 39 H 1.09007 * 109.52392 * 108.92741 * 11 10 9 40 40 H 1.09003 * 109.52653 * 229.05250 * 11 10 9 41 41 H 0.97008 * 119.99442 * 180.02562 * 16 15 13 42 42 H 1.09001 * 109.77881 * 57.81056 * 21 12 11 43 43 H 1.09005 * 109.77705 * 178.56068 * 21 12 11 44 44 H 1.09002 * 109.31301 * 281.28920 * 22 9 8 45 45 H 1.09000 * 109.31400 * 40.71174 * 22 9 8 46 46 H 1.09010 * 110.96839 * 211.70056 * 23 2 1 47 47 H 1.09000 * 110.97556 * 335.42437 * 23 2 1 48 48 H 1.08997 * 110.49067 * 143.47694 * 24 23 2 49 49 H 1.09003 * 110.48172 * 265.98713 * 24 23 2 50 50 H 0.96999 * 124.34893 * 179.59547 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0588 1.4357 0.0000 4 6 1.5440 2.1688 -1.2403 5 6 2.0643 3.5831 -1.2400 6 8 2.7772 3.9668 -0.3369 7 7 1.7384 4.4213 -2.2439 8 6 2.2446 5.7960 -2.2438 9 6 1.7375 6.5181 -3.4655 10 6 0.6623 7.2283 -3.3415 11 6 0.0299 7.9871 -4.4746 12 7 0.9520 8.0023 -5.6193 13 6 1.1568 9.1390 -6.3549 14 1 2.0775 9.2679 -6.9046 15 6 0.1812 10.1257 -6.3939 16 7 0.5003 11.3532 -6.7455 17 14 -1.5846 9.7112 -5.9473 18 1 -1.7777 9.8789 -4.4845 19 1 -2.5058 10.6202 -6.6756 20 1 -1.8742 8.3050 -6.3269 21 6 1.6471 6.7439 -5.9423 22 6 2.5173 6.3683 -4.7376 23 6 2.0645 -0.7666 1.2300 24 6 2.2625 -2.1879 0.6542 25 6 2.4508 -1.9641 -0.8300 26 8 2.9073 -2.7795 -1.6031 27 7 2.0379 -0.7301 -1.1674 28 1 -0.3633 0.4835 0.9068 29 1 -0.3634 -1.0271 -0.0347 30 1 -0.3633 0.5435 -0.8722 31 1 1.7124 1.9505 0.8962 32 1 3.1486 1.4215 -0.0126 33 1 1.8903 1.6541 -2.1365 34 1 0.4541 2.1830 -1.2278 35 1 1.1685 4.1143 -2.9664 36 1 1.8980 6.3108 -1.3478 37 1 3.3344 5.7818 -2.2561 38 1 0.1932 7.2780 -2.3699 39 1 -0.9018 7.5007 -4.7637 40 1 -0.1761 9.0097 -4.1581 41 1 -0.1815 12.0427 -6.7724 42 1 0.9168 5.9578 -6.1341 43 1 2.2762 6.8851 -6.8213 44 1 3.3917 7.0182 -4.7032 45 1 2.8445 5.3336 -4.8402 46 1 3.0120 -0.3477 1.5692 47 1 1.3311 -0.7704 2.0364 48 1 3.1484 -2.6542 1.0852 49 1 1.3808 -2.8012 0.8407 50 1 2.0713 -0.3688 -2.0670 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001718035997.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:26:16 Heat of formation + Delta-G solvation = -67.849392 kcal Electronic energy + Delta-G solvation = -28577.105834 eV Core-core repulsion = 24603.543024 eV Total energy + Delta-G solvation = -3973.562810 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.69818 -40.75011 -39.56695 -38.29223 -36.50079 -34.57886 -34.07788 -32.93402 -32.27755 -31.94556 -30.37986 -28.68384 -26.95642 -25.67651 -24.96618 -24.01155 -22.83079 -21.82621 -21.52119 -20.74029 -19.68927 -18.56160 -17.93191 -17.44730 -17.29340 -17.06561 -16.86261 -16.67765 -16.10044 -15.90541 -15.60009 -15.33729 -15.19708 -15.02407 -14.74774 -14.48986 -14.41331 -14.33169 -13.82530 -13.60869 -13.56655 -13.44652 -13.25734 -13.21215 -13.03271 -12.93537 -12.57044 -12.51204 -12.18604 -12.14369 -11.97347 -11.77675 -11.53220 -11.52673 -11.41393 -10.98247 -10.92744 -10.73061 -10.13274 -10.07686 -9.81904 -8.99464 -8.16383 -5.48123 1.08114 1.29936 1.41259 1.50157 1.58622 1.68055 2.39579 2.41396 2.44761 3.04150 3.30465 3.35823 3.52017 3.70593 3.76330 3.88099 3.89917 4.03636 4.17597 4.29225 4.32481 4.34243 4.40550 4.52360 4.58815 4.61370 4.62719 4.66269 4.73781 4.78904 4.85002 4.90861 4.95124 4.98775 4.99914 5.03496 5.15040 5.16400 5.24268 5.28918 5.42021 5.47190 5.61723 5.82181 5.91371 5.97314 6.06406 6.14077 6.59806 6.87356 7.26285 7.28461 7.59666 8.01553 9.03544 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.024022 B = 0.001911 C = 0.001903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1165.334260 B =14648.551883 C =14710.557686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.159 3.841 3 C -0.099 4.099 4 C -0.138 4.138 5 C 0.508 3.492 6 O -0.587 6.587 7 N -0.715 5.715 8 C 0.165 3.835 9 C -0.127 4.127 10 C -0.142 4.142 11 C 0.139 3.861 12 N -0.623 5.623 13 C -0.245 4.245 14 H 0.052 0.948 15 C -0.042 4.042 16 N -0.960 5.960 17 Si 0.951 3.049 18 H -0.269 1.269 19 H -0.313 1.313 20 H -0.260 1.260 21 C 0.140 3.860 22 C -0.089 4.089 23 C -0.119 4.119 24 C -0.151 4.151 25 C 0.508 3.492 26 O -0.595 6.595 27 N -0.715 5.715 28 H 0.088 0.912 29 H 0.062 0.938 30 H 0.070 0.930 31 H 0.089 0.911 32 H 0.060 0.940 33 H 0.106 0.894 34 H 0.125 0.875 35 H 0.414 0.586 36 H 0.064 0.936 37 H 0.064 0.936 38 H 0.126 0.874 39 H 0.046 0.954 40 H 0.058 0.942 41 H 0.261 0.739 42 H 0.050 0.950 43 H 0.058 0.942 44 H 0.058 0.942 45 H 0.094 0.906 46 H 0.085 0.915 47 H 0.118 0.882 48 H 0.105 0.895 49 H 0.120 0.880 50 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.456 -27.062 18.759 33.019 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.073 3.927 3 C -0.138 4.138 4 C -0.177 4.177 5 C 0.296 3.704 6 O -0.467 6.467 7 N -0.367 5.367 8 C 0.041 3.959 9 C -0.128 4.128 10 C -0.162 4.162 11 C 0.015 3.985 12 N -0.349 5.349 13 C -0.375 4.375 14 H 0.070 0.930 15 C -0.236 4.236 16 N -0.606 5.606 17 Si 0.780 3.220 18 H -0.196 1.196 19 H -0.242 1.242 20 H -0.185 1.185 21 C 0.015 3.985 22 C -0.128 4.128 23 C -0.157 4.157 24 C -0.191 4.191 25 C 0.296 3.704 26 O -0.477 6.477 27 N -0.369 5.369 28 H 0.107 0.893 29 H 0.081 0.919 30 H 0.089 0.911 31 H 0.107 0.893 32 H 0.079 0.921 33 H 0.124 0.876 34 H 0.142 0.858 35 H 0.251 0.749 36 H 0.082 0.918 37 H 0.082 0.918 38 H 0.143 0.857 39 H 0.063 0.937 40 H 0.076 0.924 41 H 0.070 0.930 42 H 0.068 0.932 43 H 0.077 0.923 44 H 0.077 0.923 45 H 0.113 0.887 46 H 0.104 0.896 47 H 0.136 0.864 48 H 0.123 0.877 49 H 0.138 0.862 50 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges -1.756 -27.095 19.077 33.183 hybrid contribution -0.734 0.903 -1.169 1.649 sum -2.490 -26.192 17.908 31.826 Atomic orbital electron populations 1.22285 0.92167 1.03177 1.04218 1.21202 0.95184 0.91146 0.85196 1.21597 1.00964 0.92915 0.98294 1.21814 1.04323 0.90133 1.01475 1.21320 0.79614 0.88666 0.80752 1.90703 1.39489 1.78806 1.37736 1.46069 1.52485 1.11725 1.26410 1.20186 0.98563 0.81959 0.95150 1.20652 0.96554 0.99759 0.95821 1.22607 0.97396 0.97141 0.99075 1.20336 0.92783 0.98550 0.86811 1.44572 1.51404 1.07914 1.30968 1.18830 0.99732 0.94429 1.24489 0.93000 1.25915 1.02101 0.95275 1.00341 1.69976 1.34519 1.01627 1.54492 0.85916 0.80957 0.77613 0.77554 1.19562 1.24167 1.18462 1.21256 0.94535 0.86574 0.96095 1.20752 0.97651 1.01813 0.92534 1.22782 1.03787 0.92323 0.96821 1.22390 1.06080 1.00006 0.90649 1.21545 0.75089 0.81437 0.92309 1.90738 1.48144 1.49437 1.59370 1.46552 1.63061 1.15243 1.12061 0.89342 0.91906 0.91136 0.89291 0.92108 0.87576 0.85753 0.74941 0.91781 0.91809 0.85674 0.93668 0.92393 0.92998 0.93180 0.92295 0.92318 0.88734 0.89639 0.86399 0.87703 0.86152 0.75155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.53 8.47 71.98 0.61 0.08 16 2 C 0.16 0.97 0.87 4.05 0.00 0.98 16 3 C -0.10 -0.90 3.71 30.59 0.11 -0.79 16 4 C -0.14 -1.19 5.21 29.85 0.16 -1.03 16 5 C 0.51 9.08 7.83 87.66 0.69 9.77 16 6 O -0.59 -15.76 15.98 -3.03 -0.05 -15.81 16 7 N -0.71 -12.23 5.55 -466.81 -2.59 -14.82 16 8 C 0.17 3.78 5.66 85.63 0.48 4.27 16 9 C -0.13 -3.44 5.22 -15.13 -0.08 -3.52 16 10 C -0.14 -4.34 9.47 27.11 0.26 -4.09 16 11 C 0.14 5.57 4.39 85.42 0.37 5.95 16 12 N -0.62 -28.24 2.80 -703.01 -1.97 -30.21 16 13 C -0.25 -13.75 10.14 84.03 0.85 -12.90 16 14 H 0.05 3.20 8.06 -2.91 -0.02 3.17 16 15 C -0.04 -2.44 5.26 84.86 0.45 -1.99 16 16 N -0.96 -60.21 13.97 21.65 0.30 -59.91 16 17 Si 0.95 45.33 24.17 68.60 1.66 46.99 16 18 H -0.27 -11.93 6.48 99.48 0.64 -11.29 16 19 H -0.31 -15.29 7.11 99.48 0.71 -14.59 16 20 H -0.26 -11.67 6.59 99.48 0.66 -11.01 16 21 C 0.14 4.93 6.59 86.31 0.57 5.50 16 22 C -0.09 -2.52 5.95 29.71 0.18 -2.35 16 23 C -0.12 -0.53 6.20 31.65 0.20 -0.33 16 24 C -0.15 -1.20 6.86 30.58 0.21 -0.99 16 25 C 0.51 8.32 8.43 87.89 0.74 9.07 16 26 O -0.60 -16.15 18.03 -3.05 -0.05 -16.21 16 27 N -0.72 -7.61 5.39 -419.99 -2.26 -9.88 16 28 H 0.09 0.09 8.14 -2.39 -0.02 0.07 16 29 H 0.06 0.25 8.14 -2.39 -0.02 0.23 16 30 H 0.07 0.19 6.39 -2.38 -0.02 0.18 16 31 H 0.09 0.86 8.10 -2.39 -0.02 0.84 16 32 H 0.06 0.82 8.10 -2.39 -0.02 0.80 16 33 H 0.11 0.62 6.90 -2.39 -0.02 0.60 16 34 H 0.12 0.50 6.43 -2.38 -0.02 0.49 16 35 H 0.41 5.18 8.46 -92.70 -0.78 4.40 16 36 H 0.06 1.56 7.78 -2.39 -0.02 1.54 16 37 H 0.06 1.58 8.11 -2.39 -0.02 1.56 16 38 H 0.13 3.22 7.73 -2.91 -0.02 3.20 16 39 H 0.05 1.75 6.39 -2.38 -0.02 1.73 16 40 H 0.06 2.61 5.05 -2.39 -0.01 2.60 16 41 H 0.26 15.57 8.31 -92.70 -0.77 14.80 16 42 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 43 H 0.06 2.14 7.96 -2.38 -0.02 2.12 16 44 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 45 H 0.09 2.04 8.14 -2.39 -0.02 2.02 16 46 H 0.08 0.44 7.91 -2.38 -0.02 0.42 16 47 H 0.12 -0.01 7.89 -2.39 -0.02 -0.02 16 48 H 0.10 0.79 8.14 -2.39 -0.02 0.77 16 49 H 0.12 0.57 8.14 -2.39 -0.02 0.55 16 50 H 0.41 3.95 7.70 -92.71 -0.71 3.24 16 Total: -1.00 -80.62 390.59 0.18 -80.44 By element: Atomic # 1 Polarization: 12.44 SS G_CDS: -0.65 Total: 11.79 kcal Atomic # 6 Polarization: 1.82 SS G_CDS: 5.80 Total: 7.61 kcal Atomic # 7 Polarization: -108.30 SS G_CDS: -6.52 Total: -114.82 kcal Atomic # 8 Polarization: -31.91 SS G_CDS: -0.10 Total: -32.01 kcal Atomic # 14 Polarization: 45.33 SS G_CDS: 1.66 Total: 46.99 kcal Total: -80.62 0.18 -80.44 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001718035997.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.590 kcal (2) G-P(sol) polarization free energy of solvation -80.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.440 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds