Wall clock time and date at job start Tue Mar 31 2020 18:27:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.51585 * 135.78061 * 2 1 4 4 C 1.53836 * 86.75475 * 154.85170 * 3 2 1 5 5 C 1.53002 * 113.65321 * 270.21989 * 4 3 2 6 6 C 1.50701 * 113.65876 * 139.27266 * 4 3 2 7 7 O 1.21275 * 119.99632 * 359.97438 * 6 4 3 8 8 N 1.34769 * 119.99690 * 179.97438 * 6 4 3 9 9 C 1.46505 * 119.99686 * 179.97438 * 8 6 4 10 10 H 1.09002 * 109.47068 * 324.99893 * 9 8 6 11 11 C 1.52997 * 109.47212 * 204.99833 * 9 8 6 12 12 N 1.46905 * 109.47325 * 54.99792 * 11 9 8 13 13 C 1.46899 * 111.00405 * 180.02562 * 12 11 9 14 14 C 1.50699 * 109.47325 * 180.02562 * 13 12 11 15 15 O 1.21293 * 119.99687 * 359.97438 * 14 13 12 16 16 N 1.34769 * 120.00001 * 179.97438 * 14 13 12 17 17 C 1.37097 * 119.99931 * 180.02562 * 16 14 13 18 18 H 1.07998 * 119.99837 * 0.02562 * 17 16 14 19 19 C 1.38950 * 120.00009 * 179.97438 * 17 16 14 20 20 N 1.31411 * 120.00039 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 119.99994 * 180.02562 * 19 17 16 22 22 H 1.48503 * 109.47069 * 359.97438 * 21 19 17 23 23 H 1.48496 * 109.47102 * 120.00117 * 21 19 17 24 24 H 1.48502 * 109.47234 * 240.00264 * 21 19 17 25 25 C 1.53002 * 109.47411 * 84.99974 * 9 8 6 26 26 C 1.52998 * 117.49791 * 8.61905 * 25 9 8 27 27 C 1.52995 * 60.00236 * 252.51771 * 26 25 9 28 28 C 1.51581 * 135.78211 * 180.02562 * 2 1 3 29 29 H 1.08003 * 120.00105 * 359.97438 * 1 2 3 30 30 H 1.07998 * 119.99610 * 180.02562 * 1 2 3 31 31 H 1.09001 * 113.66338 * 40.37843 * 3 2 1 32 32 H 1.08996 * 113.74836 * 269.32745 * 3 2 1 33 33 H 1.09002 * 109.47548 * 298.33090 * 5 4 3 34 34 H 1.08995 * 109.47462 * 58.34037 * 5 4 3 35 35 H 1.09005 * 109.47183 * 178.33661 * 5 4 3 36 36 H 0.97000 * 120.00680 * 359.97438 * 8 6 4 37 37 H 1.08998 * 109.47192 * 174.99746 * 11 9 8 38 38 H 1.09000 * 109.47325 * 294.99862 * 11 9 8 39 39 H 1.00899 * 110.99764 * 303.95647 * 12 11 9 40 40 H 1.09006 * 109.46590 * 299.99952 * 13 12 11 41 41 H 1.08996 * 109.46962 * 59.99644 * 13 12 11 42 42 H 0.96996 * 120.00362 * 0.02562 * 16 14 13 43 43 H 0.97000 * 119.99614 * 179.97438 * 20 19 17 44 44 H 1.08992 * 115.55421 * 154.33034 * 25 9 8 45 45 H 1.09005 * 117.50044 * 0.02562 * 26 25 9 46 46 H 1.08999 * 117.50208 * 145.01816 * 26 25 9 47 47 H 1.09008 * 117.49359 * 252.51162 * 27 26 25 48 48 H 1.08994 * 117.50629 * 107.49153 * 27 26 25 49 49 H 1.08995 * 113.66638 * 90.68653 * 28 2 1 50 50 H 1.08995 * 113.66661 * 319.61433 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.3964 1.0572 0.0000 4 6 3.3036 0.0000 0.6527 5 6 3.2462 0.0015 2.1816 6 6 4.7130 0.0001 0.1192 7 8 5.0341 0.7878 -0.7452 8 7 5.6165 -0.8752 0.6027 9 6 6.9866 -0.8755 0.0837 10 1 6.9724 -0.6344 -0.9793 11 6 7.6077 -2.2592 0.2845 12 7 6.7470 -3.2768 -0.3333 13 6 7.3129 -4.6212 -0.1594 14 6 6.4050 -5.6359 -0.8051 15 8 5.3864 -5.2746 -1.3557 16 7 6.7248 -6.9446 -0.7708 17 6 5.8990 -7.8677 -1.3588 18 1 4.9925 -7.5460 -1.8497 19 6 6.2290 -9.2170 -1.3239 20 7 7.3328 -9.6083 -0.7278 21 14 5.1042 -10.4746 -2.1256 22 1 3.9352 -9.7822 -2.7250 23 1 5.8486 -11.1991 -3.1868 24 1 4.6343 -11.4422 -1.1019 25 6 7.8160 0.1695 0.8327 26 6 7.1775 0.8361 2.0528 27 6 7.3543 1.6261 0.7546 28 6 2.3964 -1.0571 -0.0005 29 1 -0.5400 0.9353 0.0004 30 1 -0.5399 -0.9353 0.0004 31 1 2.1795 1.9073 0.6468 32 1 2.7192 1.3549 -0.9976 33 1 3.5891 0.9656 2.5573 34 1 2.2204 -0.1712 2.5069 35 1 3.8884 -0.7890 2.5701 36 1 5.3598 -1.5050 1.2943 37 1 8.5932 -2.2860 -0.1804 38 1 7.7034 -2.4632 1.3510 39 1 5.8090 -3.2292 0.0353 40 1 8.2966 -4.6646 -0.6271 41 1 7.4062 -4.8412 0.9041 42 1 7.5391 -7.2336 -0.3302 43 1 7.5629 -10.5503 -0.7032 44 1 8.8893 -0.0173 0.8650 45 1 6.1666 0.5299 2.3222 46 1 7.8307 1.0878 2.8883 47 1 8.1241 2.3977 0.7360 48 1 6.4599 1.8399 0.1696 49 1 2.7183 -1.3532 -0.9988 50 1 2.1797 -1.9075 0.6460 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001723334196.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:27:12 Heat of formation + Delta-G solvation = -1.253960 kcal Electronic energy + Delta-G solvation = -29390.812746 eV Core-core repulsion = 25420.137731 eV Total energy + Delta-G solvation = -3970.675015 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.03008 -39.05482 -38.23855 -37.00190 -35.58386 -34.00255 -33.54733 -31.73844 -31.23712 -29.58399 -27.92879 -26.43065 -26.07278 -24.26958 -23.69747 -22.58574 -22.03055 -20.23949 -19.91418 -19.23304 -17.94159 -17.89909 -17.11017 -16.51743 -16.38938 -16.05736 -15.40486 -15.17665 -14.87492 -14.64614 -14.58617 -14.35566 -14.14792 -13.77620 -13.59502 -13.51868 -13.13971 -12.79889 -12.59691 -12.40618 -12.24243 -12.06588 -11.89594 -11.83278 -11.63046 -11.53308 -11.51353 -11.39851 -11.11167 -11.06735 -10.49508 -10.40061 -10.35938 -10.24749 -10.06171 -9.70655 -9.54104 -9.27753 -9.08149 -8.49322 -8.11213 -7.98319 -6.44018 -3.84798 2.03219 2.53129 3.04885 3.14781 3.25634 3.32825 3.70587 3.88106 4.01875 4.10426 4.23025 4.25687 4.33165 4.66115 4.68293 4.75918 4.82397 4.88160 5.02878 5.09925 5.16882 5.21574 5.28459 5.33768 5.37035 5.47735 5.52355 5.55473 5.58613 5.60630 5.70296 5.71884 5.72835 5.81792 5.87579 5.90739 5.93692 5.98717 6.05071 6.22267 6.23068 6.24788 6.42915 6.72769 7.11996 7.39165 7.53425 7.57480 8.04234 8.15778 8.58805 9.15849 9.51937 10.03179 10.73777 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.011215 B = 0.002782 C = 0.002319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2496.044724 B =10063.651163 C =12069.301232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.147 4.147 3 C -0.080 4.080 4 C -0.107 4.107 5 C -0.127 4.127 6 C 0.537 3.463 7 O -0.533 6.533 8 N -0.717 5.717 9 C 0.178 3.822 10 H 0.101 0.899 11 C 0.054 3.946 12 N -0.666 5.666 13 C 0.050 3.950 14 C 0.440 3.560 15 O -0.582 6.582 16 N -0.563 5.563 17 C -0.299 4.299 18 H 0.103 0.897 19 C 0.022 3.978 20 N -0.902 5.902 21 Si 0.929 3.071 22 H -0.268 1.268 23 H -0.281 1.281 24 H -0.282 1.282 25 C -0.167 4.167 26 C -0.179 4.179 27 C -0.183 4.183 28 C -0.088 4.088 29 H 0.105 0.895 30 H 0.106 0.894 31 H 0.076 0.924 32 H 0.106 0.894 33 H 0.064 0.936 34 H 0.070 0.930 35 H 0.062 0.938 36 H 0.398 0.602 37 H 0.087 0.913 38 H 0.033 0.967 39 H 0.347 0.653 40 H 0.087 0.913 41 H 0.043 0.957 42 H 0.392 0.608 43 H 0.271 0.729 44 H 0.110 0.890 45 H 0.093 0.907 46 H 0.088 0.912 47 H 0.086 0.914 48 H 0.117 0.883 49 H 0.101 0.899 50 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.261 20.275 9.250 22.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.147 4.147 3 C -0.117 4.117 4 C -0.110 4.110 5 C -0.184 4.184 6 C 0.324 3.676 7 O -0.410 6.410 8 N -0.368 5.368 9 C 0.073 3.927 10 H 0.119 0.881 11 C -0.076 4.076 12 N -0.299 5.299 13 C -0.083 4.083 14 C 0.226 3.774 15 O -0.466 6.466 16 N -0.200 5.200 17 C -0.428 4.428 18 H 0.121 0.879 19 C -0.179 4.179 20 N -0.543 5.543 21 Si 0.756 3.244 22 H -0.192 1.192 23 H -0.207 1.207 24 H -0.208 1.208 25 C -0.186 4.186 26 C -0.216 4.216 27 C -0.220 4.220 28 C -0.125 4.125 29 H 0.123 0.877 30 H 0.125 0.875 31 H 0.094 0.906 32 H 0.124 0.876 33 H 0.083 0.917 34 H 0.089 0.911 35 H 0.081 0.919 36 H 0.232 0.768 37 H 0.105 0.895 38 H 0.051 0.949 39 H 0.167 0.833 40 H 0.105 0.895 41 H 0.061 0.939 42 H 0.225 0.775 43 H 0.081 0.919 44 H 0.128 0.872 45 H 0.111 0.889 46 H 0.106 0.894 47 H 0.105 0.895 48 H 0.135 0.865 49 H 0.120 0.880 50 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -3.353 20.955 7.638 22.554 hybrid contribution -0.050 -1.491 1.269 1.958 sum -3.403 19.464 8.907 21.674 Atomic orbital electron populations 1.22872 0.93406 1.02152 1.02549 1.22797 0.93880 0.98048 0.99961 1.22227 0.92082 0.95277 1.02096 1.21968 0.91358 1.00614 0.97052 1.21591 1.03116 1.02404 0.91284 1.20187 0.86111 0.79900 0.81427 1.90620 1.79785 1.39337 1.31222 1.46013 1.10943 1.37725 1.42128 1.20534 0.79767 0.93092 0.99269 0.88070 1.22227 0.97867 0.90310 0.97201 1.60012 1.05534 1.02373 1.61982 1.21692 0.99043 0.88808 0.98719 1.19790 0.88310 0.83277 0.86069 1.90529 1.27841 1.79661 1.48598 1.41865 1.23417 1.04664 1.50068 1.19752 1.04890 0.86337 1.31855 0.87869 1.25262 0.97043 0.98055 0.97579 1.69619 1.23788 1.17234 1.43668 0.85807 0.79909 0.79988 0.78697 1.19194 1.20716 1.20767 1.22701 0.99496 0.94503 1.01946 1.22922 1.02075 1.04890 0.91691 1.23321 1.04575 0.93413 1.00645 1.22321 0.92605 0.95647 1.01965 0.87713 0.87544 0.90585 0.87577 0.91686 0.91098 0.91918 0.76760 0.89460 0.94860 0.83301 0.89462 0.93868 0.77477 0.91914 0.87204 0.88885 0.89400 0.89539 0.86462 0.88039 0.89782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.51 14.71 29.01 0.43 -1.08 16 2 C -0.15 -1.44 6.60 -100.29 -0.66 -2.11 16 3 C -0.08 -0.79 6.98 -27.01 -0.19 -0.98 16 4 C -0.11 -1.04 1.27 -154.86 -0.20 -1.23 16 5 C -0.13 -0.95 8.98 37.16 0.33 -0.61 16 6 C 0.54 6.34 5.77 -10.99 -0.06 6.27 16 7 O -0.53 -7.94 12.92 5.56 0.07 -7.86 16 8 N -0.72 -7.46 2.78 -53.80 -0.15 -7.61 16 9 C 0.18 1.99 2.74 -67.93 -0.19 1.80 16 10 H 0.10 1.41 7.58 -51.93 -0.39 1.02 16 11 C 0.05 0.61 5.28 -3.82 -0.02 0.59 16 12 N -0.67 -10.21 6.12 -115.06 -0.70 -10.91 16 13 C 0.05 0.85 6.17 -4.98 -0.03 0.81 16 14 C 0.44 10.19 7.82 -10.99 -0.09 10.10 16 15 O -0.58 -15.58 15.78 5.55 0.09 -15.49 16 16 N -0.56 -14.08 5.29 -10.97 -0.06 -14.13 16 17 C -0.30 -8.27 9.68 -14.93 -0.14 -8.41 16 18 H 0.10 3.01 7.16 -52.49 -0.38 2.63 16 19 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 20 N -0.90 -24.34 13.05 55.50 0.72 -23.61 16 21 Si 0.93 20.92 29.55 -169.99 -5.02 15.89 16 22 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 23 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 24 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 25 C -0.17 -1.63 5.71 -90.62 -0.52 -2.14 16 26 C -0.18 -1.62 9.73 -26.73 -0.26 -1.88 16 27 C -0.18 -1.92 9.82 -26.73 -0.26 -2.18 16 28 C -0.09 -0.93 7.18 -27.00 -0.19 -1.13 16 29 H 0.10 0.77 8.06 -52.48 -0.42 0.35 16 30 H 0.11 0.86 8.06 -52.49 -0.42 0.44 16 31 H 0.08 0.66 8.10 -51.93 -0.42 0.24 16 32 H 0.11 1.21 7.42 -51.93 -0.39 0.83 16 33 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 34 H 0.07 0.51 7.70 -51.93 -0.40 0.11 16 35 H 0.06 0.41 7.04 -51.93 -0.37 0.04 16 36 H 0.40 3.56 7.05 -40.82 -0.29 3.28 16 37 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 38 H 0.03 0.34 8.14 -51.93 -0.42 -0.09 16 39 H 0.35 5.43 7.28 -39.29 -0.29 5.14 16 40 H 0.09 1.37 8.14 -51.93 -0.42 0.95 16 41 H 0.04 0.65 8.14 -51.93 -0.42 0.22 16 42 H 0.39 9.35 7.90 -40.82 -0.32 9.03 16 43 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 44 H 0.11 0.95 8.11 -51.93 -0.42 0.53 16 45 H 0.09 0.83 6.67 -51.93 -0.35 0.49 16 46 H 0.09 0.71 8.14 -51.93 -0.42 0.28 16 47 H 0.09 0.82 8.14 -51.92 -0.42 0.39 16 48 H 0.12 1.50 5.02 -51.93 -0.26 1.24 16 49 H 0.10 1.26 8.09 -51.93 -0.42 0.84 16 50 H 0.08 0.83 8.10 -51.93 -0.42 0.41 16 LS Contribution 405.38 15.07 6.11 6.11 Total: -1.00 -31.98 405.38 -9.13 -41.11 By element: Atomic # 1 Polarization: 26.23 SS G_CDS: -8.05 Total: 18.18 kcal Atomic # 6 Polarization: 0.47 SS G_CDS: -2.15 Total: -1.67 kcal Atomic # 7 Polarization: -56.09 SS G_CDS: -0.19 Total: -56.27 kcal Atomic # 8 Polarization: -23.51 SS G_CDS: 0.16 Total: -23.35 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.89 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -31.98 -9.13 -41.11 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001723334196.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.859 kcal (2) G-P(sol) polarization free energy of solvation -31.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.113 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds