Wall clock time and date at job start Tue Mar 31 2020 18:27:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.51585 * 135.78061 * 2 1 4 4 C 1.53836 * 86.75475 * 154.85170 * 3 2 1 5 5 C 1.53002 * 113.65321 * 270.21989 * 4 3 2 6 6 C 1.50701 * 113.65876 * 139.27266 * 4 3 2 7 7 O 1.21275 * 119.99632 * 359.97438 * 6 4 3 8 8 N 1.34769 * 119.99690 * 179.97438 * 6 4 3 9 9 C 1.46505 * 119.99686 * 179.97438 * 8 6 4 10 10 H 1.09002 * 109.47068 * 324.99893 * 9 8 6 11 11 C 1.52997 * 109.47212 * 204.99833 * 9 8 6 12 12 N 1.46905 * 109.47325 * 54.99792 * 11 9 8 13 13 C 1.46899 * 111.00405 * 180.02562 * 12 11 9 14 14 C 1.50699 * 109.47325 * 180.02562 * 13 12 11 15 15 O 1.21293 * 119.99687 * 359.97438 * 14 13 12 16 16 N 1.34769 * 120.00001 * 179.97438 * 14 13 12 17 17 C 1.37097 * 119.99931 * 180.02562 * 16 14 13 18 18 H 1.07998 * 119.99837 * 0.02562 * 17 16 14 19 19 C 1.38950 * 120.00009 * 179.97438 * 17 16 14 20 20 N 1.31411 * 120.00039 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 119.99994 * 180.02562 * 19 17 16 22 22 H 1.48503 * 109.47069 * 359.97438 * 21 19 17 23 23 H 1.48496 * 109.47102 * 120.00117 * 21 19 17 24 24 H 1.48502 * 109.47234 * 240.00264 * 21 19 17 25 25 C 1.53002 * 109.47411 * 84.99974 * 9 8 6 26 26 C 1.52998 * 117.49791 * 8.61905 * 25 9 8 27 27 C 1.52995 * 60.00236 * 252.51771 * 26 25 9 28 28 C 1.51581 * 135.78211 * 180.02562 * 2 1 3 29 29 H 1.08003 * 120.00105 * 359.97438 * 1 2 3 30 30 H 1.07998 * 119.99610 * 180.02562 * 1 2 3 31 31 H 1.09001 * 113.66338 * 40.37843 * 3 2 1 32 32 H 1.08996 * 113.74836 * 269.32745 * 3 2 1 33 33 H 1.09002 * 109.47548 * 298.33090 * 5 4 3 34 34 H 1.08995 * 109.47462 * 58.34037 * 5 4 3 35 35 H 1.09005 * 109.47183 * 178.33661 * 5 4 3 36 36 H 0.97000 * 120.00680 * 359.97438 * 8 6 4 37 37 H 1.08998 * 109.47192 * 174.99746 * 11 9 8 38 38 H 1.09000 * 109.47325 * 294.99862 * 11 9 8 39 39 H 1.00899 * 110.99764 * 303.95647 * 12 11 9 40 40 H 1.09006 * 109.46590 * 299.99952 * 13 12 11 41 41 H 1.08996 * 109.46962 * 59.99644 * 13 12 11 42 42 H 0.96996 * 120.00362 * 0.02562 * 16 14 13 43 43 H 0.97000 * 119.99614 * 179.97438 * 20 19 17 44 44 H 1.08992 * 115.55421 * 154.33034 * 25 9 8 45 45 H 1.09005 * 117.50044 * 0.02562 * 26 25 9 46 46 H 1.08999 * 117.50208 * 145.01816 * 26 25 9 47 47 H 1.09008 * 117.49359 * 252.51162 * 27 26 25 48 48 H 1.08994 * 117.50629 * 107.49153 * 27 26 25 49 49 H 1.08995 * 113.66638 * 90.68653 * 28 2 1 50 50 H 1.08995 * 113.66661 * 319.61433 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.3964 1.0572 0.0000 4 6 3.3036 0.0000 0.6527 5 6 3.2462 0.0015 2.1816 6 6 4.7130 0.0001 0.1192 7 8 5.0341 0.7878 -0.7452 8 7 5.6165 -0.8752 0.6027 9 6 6.9866 -0.8755 0.0837 10 1 6.9724 -0.6344 -0.9793 11 6 7.6077 -2.2592 0.2845 12 7 6.7470 -3.2768 -0.3333 13 6 7.3129 -4.6212 -0.1594 14 6 6.4050 -5.6359 -0.8051 15 8 5.3864 -5.2746 -1.3557 16 7 6.7248 -6.9446 -0.7708 17 6 5.8990 -7.8677 -1.3588 18 1 4.9925 -7.5460 -1.8497 19 6 6.2290 -9.2170 -1.3239 20 7 7.3328 -9.6083 -0.7278 21 14 5.1042 -10.4746 -2.1256 22 1 3.9352 -9.7822 -2.7250 23 1 5.8486 -11.1991 -3.1868 24 1 4.6343 -11.4422 -1.1019 25 6 7.8160 0.1695 0.8327 26 6 7.1775 0.8361 2.0528 27 6 7.3543 1.6261 0.7546 28 6 2.3964 -1.0571 -0.0005 29 1 -0.5400 0.9353 0.0004 30 1 -0.5399 -0.9353 0.0004 31 1 2.1795 1.9073 0.6468 32 1 2.7192 1.3549 -0.9976 33 1 3.5891 0.9656 2.5573 34 1 2.2204 -0.1712 2.5069 35 1 3.8884 -0.7890 2.5701 36 1 5.3598 -1.5050 1.2943 37 1 8.5932 -2.2860 -0.1804 38 1 7.7034 -2.4632 1.3510 39 1 5.8090 -3.2292 0.0353 40 1 8.2966 -4.6646 -0.6271 41 1 7.4062 -4.8412 0.9041 42 1 7.5391 -7.2336 -0.3302 43 1 7.5629 -10.5503 -0.7032 44 1 8.8893 -0.0173 0.8650 45 1 6.1666 0.5299 2.3222 46 1 7.8307 1.0878 2.8883 47 1 8.1241 2.3977 0.7360 48 1 6.4599 1.8399 0.1696 49 1 2.7183 -1.3532 -0.9988 50 1 2.1797 -1.9075 0.6460 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001723334196.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:27:11 Heat of formation + Delta-G solvation = -22.427982 kcal Electronic energy + Delta-G solvation = -29391.730921 eV Core-core repulsion = 25420.137731 eV Total energy + Delta-G solvation = -3971.593190 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.90719 -40.21420 -39.72951 -37.96414 -36.73669 -35.86037 -34.64447 -33.26344 -32.49752 -30.65506 -28.62901 -27.94471 -26.91286 -25.91264 -24.61306 -23.43259 -22.96158 -21.29685 -20.88345 -20.73197 -19.89688 -18.71173 -18.12761 -17.70097 -17.35359 -17.21409 -16.87696 -16.38333 -15.98525 -15.94575 -15.65818 -15.50294 -15.22504 -15.13577 -14.88285 -14.44356 -14.30391 -13.96421 -13.54984 -13.44669 -13.37788 -13.24394 -13.02480 -12.97680 -12.82174 -12.73218 -12.67441 -12.40515 -12.33355 -12.21300 -12.11956 -11.84581 -11.51298 -11.27158 -11.17403 -10.89143 -10.63011 -10.34861 -10.05738 -10.01030 -9.97202 -9.32215 -8.47002 -5.95321 1.27774 1.36208 1.41863 1.55632 1.60611 2.05897 2.18429 2.28821 2.80808 3.01311 3.20736 3.32471 3.45628 3.49272 3.56564 3.79077 3.92845 3.93646 4.02829 4.11184 4.28014 4.32804 4.36321 4.41900 4.48236 4.53485 4.62681 4.66550 4.74647 4.74867 4.77630 4.84297 4.85618 4.93394 4.99028 4.99370 5.06088 5.18140 5.21547 5.30853 5.39305 5.41295 5.53723 5.54936 5.86384 5.97622 6.08697 6.37377 6.52718 6.60495 7.13195 7.25939 7.56976 8.12501 8.70579 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.011215 B = 0.002782 C = 0.002319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2496.044724 B =10063.651163 C =12069.301232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.162 4.162 3 C -0.080 4.080 4 C -0.098 4.098 5 C -0.122 4.122 6 C 0.533 3.467 7 O -0.569 6.569 8 N -0.708 5.708 9 C 0.182 3.818 10 H 0.067 0.933 11 C 0.061 3.939 12 N -0.685 5.685 13 C 0.065 3.935 14 C 0.437 3.563 15 O -0.624 6.624 16 N -0.573 5.573 17 C -0.332 4.332 18 H 0.077 0.923 19 C -0.012 4.012 20 N -0.920 5.920 21 Si 0.990 3.010 22 H -0.274 1.274 23 H -0.272 1.272 24 H -0.269 1.269 25 C -0.164 4.164 26 C -0.163 4.163 27 C -0.198 4.198 28 C -0.093 4.093 29 H 0.122 0.878 30 H 0.113 0.887 31 H 0.090 0.910 32 H 0.083 0.917 33 H 0.072 0.928 34 H 0.078 0.922 35 H 0.074 0.926 36 H 0.407 0.593 37 H 0.097 0.903 38 H 0.060 0.940 39 H 0.343 0.657 40 H 0.105 0.895 41 H 0.073 0.927 42 H 0.397 0.603 43 H 0.277 0.723 44 H 0.128 0.872 45 H 0.094 0.906 46 H 0.106 0.894 47 H 0.095 0.905 48 H 0.091 0.909 49 H 0.073 0.927 50 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.868 20.214 11.345 23.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.162 4.162 3 C -0.117 4.117 4 C -0.102 4.102 5 C -0.179 4.179 6 C 0.320 3.680 7 O -0.449 6.449 8 N -0.360 5.360 9 C 0.077 3.923 10 H 0.085 0.915 11 C -0.068 4.068 12 N -0.319 5.319 13 C -0.067 4.067 14 C 0.224 3.776 15 O -0.510 6.510 16 N -0.210 5.210 17 C -0.462 4.462 18 H 0.095 0.905 19 C -0.212 4.212 20 N -0.561 5.561 21 Si 0.814 3.186 22 H -0.199 1.199 23 H -0.197 1.197 24 H -0.195 1.195 25 C -0.184 4.184 26 C -0.200 4.200 27 C -0.235 4.235 28 C -0.130 4.130 29 H 0.140 0.860 30 H 0.131 0.869 31 H 0.108 0.892 32 H 0.101 0.899 33 H 0.091 0.909 34 H 0.097 0.903 35 H 0.092 0.908 36 H 0.243 0.757 37 H 0.116 0.884 38 H 0.078 0.922 39 H 0.162 0.838 40 H 0.123 0.877 41 H 0.091 0.909 42 H 0.231 0.769 43 H 0.087 0.913 44 H 0.145 0.855 45 H 0.112 0.888 46 H 0.124 0.876 47 H 0.114 0.886 48 H 0.110 0.890 49 H 0.091 0.909 50 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -2.929 20.885 9.769 23.242 hybrid contribution -0.205 -1.415 0.569 1.539 sum -3.133 19.470 10.338 22.265 Atomic orbital electron populations 1.23138 0.92989 1.03293 1.00207 1.22758 0.94186 0.97266 1.01980 1.22148 0.92383 0.95958 1.01235 1.22000 0.89622 0.99917 0.98616 1.21603 1.03980 1.03311 0.89041 1.20595 0.86996 0.79460 0.80927 1.90609 1.80521 1.40881 1.32840 1.45947 1.10657 1.37398 1.41950 1.20393 0.80396 0.93741 0.97746 0.91526 1.22264 0.97336 0.88718 0.98495 1.59976 1.06017 1.02391 1.63481 1.21548 0.97770 0.87625 0.99751 1.20922 0.88318 0.83586 0.84743 1.90502 1.29988 1.80362 1.50165 1.41923 1.23402 1.05216 1.50465 1.19678 1.05169 0.87758 1.33609 0.90481 1.26000 0.98342 0.99162 0.97648 1.69670 1.24554 1.18006 1.43840 0.84907 0.77920 0.77606 0.78137 1.19902 1.19733 1.19453 1.22674 1.00108 0.93350 1.02228 1.22988 1.02399 1.03149 0.91438 1.23248 1.04065 0.94271 1.01886 1.22250 0.93675 0.96387 1.00705 0.86034 0.86871 0.89177 0.89897 0.90915 0.90327 0.90752 0.75663 0.88429 0.92236 0.83771 0.87695 0.90905 0.76924 0.91306 0.85460 0.88788 0.87583 0.88618 0.89032 0.90862 0.89183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.58 14.71 67.78 1.00 -1.59 16 2 C -0.16 -3.15 6.60 -15.98 -0.11 -3.26 16 3 C -0.08 -1.62 6.98 30.41 0.21 -1.41 16 4 C -0.10 -1.92 1.27 -52.41 -0.07 -1.99 16 5 C -0.12 -1.63 8.98 71.98 0.65 -0.98 16 6 C 0.53 12.94 5.77 87.66 0.51 13.44 16 7 O -0.57 -18.01 12.92 -3.01 -0.04 -18.05 16 8 N -0.71 -14.48 2.78 -442.54 -1.23 -15.72 16 9 C 0.18 3.95 2.74 44.99 0.12 4.08 16 10 H 0.07 1.94 7.58 -2.39 -0.02 1.92 16 11 C 0.06 1.25 5.28 86.30 0.46 1.70 16 12 N -0.69 -20.27 6.12 -517.93 -3.17 -23.44 16 13 C 0.07 2.09 6.17 85.56 0.53 2.62 16 14 C 0.44 20.29 7.82 87.66 0.69 20.98 16 15 O -0.62 -34.22 15.78 -3.07 -0.05 -34.27 16 16 N -0.57 -28.85 5.29 -307.00 -1.62 -30.47 16 17 C -0.33 -18.75 9.68 84.04 0.81 -17.94 16 18 H 0.08 4.67 7.16 -2.91 -0.02 4.65 16 19 C -0.01 -0.62 5.50 84.93 0.47 -0.15 16 20 N -0.92 -49.06 13.05 21.66 0.28 -48.77 16 21 Si 0.99 42.70 29.55 68.60 2.03 44.73 16 22 H -0.27 -12.01 7.11 99.48 0.71 -11.31 16 23 H -0.27 -11.28 7.11 99.48 0.71 -10.58 16 24 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 25 C -0.16 -2.92 5.71 -10.79 -0.06 -2.98 16 26 C -0.16 -2.57 9.73 30.59 0.30 -2.27 16 27 C -0.20 -4.01 9.82 30.59 0.30 -3.71 16 28 C -0.09 -2.03 7.18 30.42 0.22 -1.81 16 29 H 0.12 1.55 8.06 -2.91 -0.02 1.53 16 30 H 0.11 1.68 8.06 -2.91 -0.02 1.65 16 31 H 0.09 1.52 8.10 -2.39 -0.02 1.50 16 32 H 0.08 2.06 7.42 -2.39 -0.02 2.04 16 33 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 34 H 0.08 0.96 7.70 -2.39 -0.02 0.94 16 35 H 0.07 0.81 7.04 -2.38 -0.02 0.79 16 36 H 0.41 6.78 7.05 -92.71 -0.65 6.13 16 37 H 0.10 1.84 8.14 -2.39 -0.02 1.82 16 38 H 0.06 0.96 8.14 -2.39 -0.02 0.95 16 39 H 0.34 10.56 7.28 -89.69 -0.65 9.90 16 40 H 0.11 3.04 8.14 -2.38 -0.02 3.02 16 41 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 42 H 0.40 18.87 7.90 -92.71 -0.73 18.14 16 43 H 0.28 13.82 8.31 -92.71 -0.77 13.05 16 44 H 0.13 1.85 8.11 -2.39 -0.02 1.83 16 45 H 0.09 1.47 6.67 -2.38 -0.02 1.45 16 46 H 0.11 1.34 8.14 -2.39 -0.02 1.32 16 47 H 0.10 1.72 8.14 -2.38 -0.02 1.70 16 48 H 0.09 2.42 5.02 -2.39 -0.01 2.40 16 49 H 0.07 1.99 8.09 -2.39 -0.02 1.97 16 50 H 0.09 1.80 8.10 -2.39 -0.02 1.78 16 Total: -1.00 -71.39 405.38 1.15 -70.24 By element: Atomic # 1 Polarization: 52.10 SS G_CDS: -1.07 Total: 51.03 kcal Atomic # 6 Polarization: -1.29 SS G_CDS: 6.02 Total: 4.73 kcal Atomic # 7 Polarization: -112.66 SS G_CDS: -5.74 Total: -118.40 kcal Atomic # 8 Polarization: -52.24 SS G_CDS: -0.09 Total: -52.32 kcal Atomic # 14 Polarization: 42.70 SS G_CDS: 2.03 Total: 44.73 kcal Total: -71.39 1.15 -70.24 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001723334196.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.811 kcal (2) G-P(sol) polarization free energy of solvation -71.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.239 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds