Wall clock time and date at job start Tue Mar 31 2020 18:27:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.51586 * 135.77734 * 2 1 4 4 C 1.53847 * 86.75015 * 154.84876 * 3 2 1 5 5 C 1.52998 * 113.66147 * 270.21860 * 4 3 2 6 6 C 1.50703 * 113.65309 * 139.27100 * 4 3 2 7 7 O 1.21288 * 120.00048 * 359.97438 * 6 4 3 8 8 N 1.34778 * 120.00070 * 179.97438 * 6 4 3 9 9 C 1.46496 * 120.00031 * 179.97438 * 8 6 4 10 10 H 1.09004 * 109.47055 * 35.00639 * 9 8 6 11 11 C 1.53006 * 109.47070 * 154.99902 * 9 8 6 12 12 N 1.46898 * 109.47006 * 305.00086 * 11 9 8 13 13 C 1.46903 * 110.99673 * 179.97438 * 12 11 9 14 14 C 1.50701 * 109.47054 * 180.02562 * 13 12 11 15 15 O 1.21301 * 119.99879 * 0.02562 * 14 13 12 16 16 N 1.34770 * 120.00204 * 180.02562 * 14 13 12 17 17 C 1.37099 * 120.00275 * 180.02562 * 16 14 13 18 18 H 1.08003 * 119.99797 * 359.97438 * 17 16 14 19 19 C 1.38953 * 120.00254 * 180.02562 * 17 16 14 20 20 N 1.31407 * 119.99867 * 180.02562 * 19 17 16 21 21 Si 1.86794 * 119.99724 * 359.97438 * 19 17 16 22 22 H 1.48508 * 109.46905 * 90.00811 * 21 19 17 23 23 H 1.48498 * 109.47146 * 210.00027 * 21 19 17 24 24 H 1.48496 * 109.47415 * 330.00587 * 21 19 17 25 25 C 1.52999 * 109.47330 * 274.99914 * 9 8 6 26 26 C 1.53001 * 117.49841 * 128.62352 * 25 9 8 27 27 C 1.52996 * 117.49732 * 60.00194 * 25 9 8 28 28 C 1.51576 * 135.78640 * 180.02562 * 2 1 3 29 29 H 1.07993 * 120.00011 * 359.97438 * 1 2 3 30 30 H 1.08005 * 119.99431 * 179.97438 * 1 2 3 31 31 H 1.08994 * 113.66523 * 40.39189 * 3 2 1 32 32 H 1.08994 * 113.75271 * 269.32320 * 3 2 1 33 33 H 1.08997 * 109.47173 * 298.34535 * 5 4 3 34 34 H 1.09003 * 109.46663 * 58.33426 * 5 4 3 35 35 H 1.08997 * 109.46881 * 178.33793 * 5 4 3 36 36 H 0.97002 * 119.99581 * 359.97438 * 8 6 4 37 37 H 1.09001 * 109.47002 * 64.99868 * 11 9 8 38 38 H 1.08993 * 109.46955 * 185.00306 * 11 9 8 39 39 H 1.00906 * 111.00348 * 56.04933 * 12 11 9 40 40 H 1.08993 * 109.47323 * 299.99830 * 13 12 11 41 41 H 1.08995 * 109.46831 * 60.00909 * 13 12 11 42 42 H 0.96999 * 120.00258 * 0.02562 * 16 14 13 43 43 H 0.97003 * 120.00051 * 179.97438 * 20 19 17 44 44 H 1.09003 * 115.54942 * 274.33351 * 25 9 8 45 45 H 1.09000 * 117.49788 * 359.97438 * 26 25 9 46 46 H 1.08993 * 117.49678 * 145.02352 * 26 25 9 47 47 H 1.09005 * 117.49907 * 214.97922 * 27 25 9 48 48 H 1.09005 * 117.50127 * 359.97438 * 27 25 9 49 49 H 1.08993 * 113.66945 * 90.68182 * 28 2 1 50 50 H 1.09002 * 113.66056 * 319.61172 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.3964 1.0572 0.0000 4 6 3.3036 0.0000 0.6528 5 6 3.2463 0.0014 2.1817 6 6 4.7130 0.0002 0.1193 7 8 5.0341 0.7879 -0.7452 8 7 5.6167 -0.8751 0.6027 9 6 6.9866 -0.8754 0.0837 10 1 7.2858 0.1458 -0.1526 11 6 7.9319 -1.4523 1.1394 12 7 7.7809 -0.7029 2.3938 13 6 8.6749 -1.2307 3.4331 14 6 8.4919 -0.4392 4.7025 15 8 7.6947 0.4743 4.7379 16 7 9.2139 -0.7464 5.7982 17 6 9.0470 -0.0268 6.9531 18 1 8.3372 0.7866 6.9847 19 6 9.7918 -0.3431 8.0827 20 7 9.6314 0.3464 9.1898 21 14 11.0199 -1.7495 8.0278 22 1 12.3457 -1.2325 7.6031 23 1 11.1355 -2.3587 9.3772 24 1 10.5552 -2.7751 7.0597 25 6 7.0522 -1.7320 -1.1823 26 6 7.6869 -1.1068 -2.4262 27 6 6.1726 -1.3160 -2.3631 28 6 2.3965 -1.0570 -0.0005 29 1 -0.5400 0.9352 0.0004 30 1 -0.5399 -0.9354 -0.0004 31 1 2.1796 1.9072 0.6469 32 1 2.7192 1.3550 -0.9975 33 1 3.5890 0.9655 2.5573 34 1 2.2203 -0.1713 2.5069 35 1 3.8885 -0.7891 2.5700 36 1 5.3599 -1.5049 1.2944 37 1 7.6883 -2.5008 1.3110 38 1 8.9608 -1.3709 0.7892 39 1 6.8212 -0.7092 2.7055 40 1 8.4361 -2.2775 3.6206 41 1 9.7091 -1.1480 3.0990 42 1 9.8517 -1.4767 5.7698 43 1 10.1510 0.1253 9.9785 44 1 7.2060 -2.7989 -1.0206 45 1 8.0574 -0.0851 -2.3427 46 1 8.2586 -1.7624 -3.0830 47 1 5.7481 -2.1093 -2.9784 48 1 5.5469 -0.4323 -2.2378 49 1 2.7184 -1.3532 -0.9988 50 1 2.1797 -1.9074 0.6461 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001723334205.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:27:16 Heat of formation + Delta-G solvation = 2.007740 kcal Electronic energy + Delta-G solvation = -29219.189985 eV Core-core repulsion = 25248.656408 eV Total energy + Delta-G solvation = -3970.533577 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.95398 -39.03191 -38.39826 -37.09981 -35.76242 -34.11302 -33.66206 -31.77889 -31.65530 -29.57058 -27.88469 -26.55895 -26.15565 -24.17189 -23.61706 -22.42828 -22.10442 -20.52411 -19.98944 -19.38336 -18.39189 -17.99601 -17.11765 -16.65929 -16.14036 -15.89078 -15.52767 -15.19369 -15.00988 -14.85005 -14.74512 -14.52352 -14.12757 -13.89720 -13.61557 -13.34768 -13.21803 -12.71784 -12.63223 -12.44736 -12.29078 -12.15715 -11.99546 -11.91877 -11.85940 -11.66760 -11.52036 -11.45677 -11.17255 -11.10160 -10.62170 -10.49962 -10.46068 -10.35376 -9.99861 -9.71428 -9.59752 -9.34182 -9.10340 -8.62585 -8.23740 -8.18831 -6.33318 -3.84883 1.94529 2.52501 2.97858 2.99711 3.04880 3.13029 3.70460 3.75320 3.95117 4.06944 4.08055 4.20703 4.27304 4.59031 4.64546 4.75230 4.76674 4.84238 4.91954 5.00198 5.11619 5.15080 5.18418 5.30794 5.34298 5.41615 5.49935 5.52306 5.54872 5.58496 5.61802 5.69170 5.71168 5.72643 5.76138 5.85173 5.90321 5.92708 6.03151 6.05967 6.15175 6.18228 6.40293 6.64167 6.98575 7.39197 7.47756 7.55640 8.11984 8.15969 8.57161 8.92610 9.39876 9.79813 10.79776 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.012584 B = 0.002636 C = 0.002271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2224.439259 B =10618.064286 C =12328.722744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.146 4.146 3 C -0.082 4.082 4 C -0.104 4.104 5 C -0.128 4.128 6 C 0.539 3.461 7 O -0.536 6.536 8 N -0.716 5.716 9 C 0.178 3.822 10 H 0.099 0.901 11 C 0.055 3.945 12 N -0.666 5.666 13 C 0.047 3.953 14 C 0.449 3.551 15 O -0.563 6.563 16 N -0.590 5.590 17 C -0.305 4.305 18 H 0.120 0.880 19 C 0.041 3.959 20 N -0.881 5.881 21 Si 0.880 3.120 22 H -0.270 1.270 23 H -0.277 1.277 24 H -0.270 1.270 25 C -0.170 4.170 26 C -0.169 4.169 27 C -0.182 4.182 28 C -0.088 4.088 29 H 0.106 0.894 30 H 0.105 0.895 31 H 0.079 0.921 32 H 0.105 0.895 33 H 0.072 0.928 34 H 0.068 0.932 35 H 0.063 0.937 36 H 0.397 0.603 37 H 0.032 0.968 38 H 0.089 0.911 39 H 0.349 0.651 40 H 0.045 0.955 41 H 0.089 0.911 42 H 0.370 0.630 43 H 0.273 0.727 44 H 0.102 0.898 45 H 0.096 0.904 46 H 0.091 0.909 47 H 0.084 0.916 48 H 0.118 0.882 49 H 0.094 0.906 50 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.949 -9.094 -21.390 25.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.146 4.146 3 C -0.119 4.119 4 C -0.107 4.107 5 C -0.186 4.186 6 C 0.326 3.674 7 O -0.413 6.413 8 N -0.366 5.366 9 C 0.073 3.927 10 H 0.117 0.883 11 C -0.076 4.076 12 N -0.299 5.299 13 C -0.085 4.085 14 C 0.234 3.766 15 O -0.445 6.445 16 N -0.230 5.230 17 C -0.434 4.434 18 H 0.137 0.863 19 C -0.162 4.162 20 N -0.521 5.521 21 Si 0.707 3.293 22 H -0.196 1.196 23 H -0.202 1.202 24 H -0.196 1.196 25 C -0.190 4.190 26 C -0.207 4.207 27 C -0.219 4.219 28 C -0.125 4.125 29 H 0.124 0.876 30 H 0.123 0.877 31 H 0.098 0.902 32 H 0.123 0.877 33 H 0.091 0.909 34 H 0.087 0.913 35 H 0.082 0.918 36 H 0.231 0.769 37 H 0.050 0.950 38 H 0.107 0.893 39 H 0.169 0.831 40 H 0.062 0.938 41 H 0.107 0.893 42 H 0.203 0.797 43 H 0.084 0.916 44 H 0.120 0.880 45 H 0.115 0.885 46 H 0.110 0.890 47 H 0.103 0.897 48 H 0.136 0.864 49 H 0.113 0.887 50 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -10.740 -7.355 -21.911 25.486 hybrid contribution 0.631 -2.419 0.815 2.629 sum -10.109 -9.774 -21.095 25.352 Atomic orbital electron populations 1.22863 0.93384 1.02150 1.02596 1.22779 0.93820 0.98079 0.99907 1.22250 0.91900 0.95652 1.02115 1.21968 0.91154 1.00016 0.97537 1.21598 1.02858 1.03530 0.90592 1.20173 0.86270 0.79586 0.81410 1.90613 1.79890 1.39203 1.31577 1.45986 1.10948 1.37786 1.41907 1.20580 0.80793 1.00458 0.90834 0.88296 1.22238 1.00274 0.94766 0.90273 1.59997 1.11815 1.55434 1.02681 1.21726 0.98637 0.96233 0.91939 1.19691 0.85126 0.87439 0.84318 1.90576 1.38110 1.31984 1.83835 1.42203 1.37575 1.31796 1.11376 1.19430 1.23237 1.14396 0.86329 0.86280 1.25044 0.97971 0.97942 0.95219 1.69621 1.40905 1.39794 1.01746 0.86666 0.82063 0.82174 0.78424 1.19580 1.20191 1.19560 1.22646 1.06916 0.99463 0.89940 1.22913 0.96043 1.02045 0.99654 1.23256 0.94119 1.04301 1.00228 1.22282 0.93193 0.95860 1.01165 0.87570 0.87727 0.90223 0.87655 0.90918 0.91285 0.91801 0.76881 0.94953 0.89316 0.83107 0.93754 0.89303 0.79705 0.91591 0.87978 0.88532 0.89046 0.89720 0.86409 0.88738 0.90083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.30 14.71 29.01 0.43 -0.87 16 2 C -0.15 -1.26 6.60 -100.29 -0.66 -1.92 16 3 C -0.08 -0.81 6.98 -27.01 -0.19 -1.00 16 4 C -0.10 -1.01 1.27 -154.86 -0.20 -1.20 16 5 C -0.13 -1.24 8.99 37.16 0.33 -0.90 16 6 C 0.54 6.33 6.26 -10.98 -0.07 6.26 16 7 O -0.54 -7.89 12.93 5.55 0.07 -7.82 16 8 N -0.72 -7.34 4.22 -53.80 -0.23 -7.57 16 9 C 0.18 1.92 2.58 -67.93 -0.18 1.74 16 10 H 0.10 1.35 7.33 -51.93 -0.38 0.97 16 11 C 0.05 0.58 5.28 -3.82 -0.02 0.56 16 12 N -0.67 -9.76 6.12 -115.06 -0.70 -10.46 16 13 C 0.05 0.75 6.17 -4.97 -0.03 0.72 16 14 C 0.45 9.96 7.82 -10.99 -0.09 9.87 16 15 O -0.56 -14.89 15.78 5.54 0.09 -14.80 16 16 N -0.59 -13.81 5.09 -10.96 -0.06 -13.87 16 17 C -0.31 -8.56 10.16 -14.93 -0.15 -8.71 16 18 H 0.12 3.83 7.39 -52.48 -0.39 3.44 16 19 C 0.04 1.12 5.50 -17.47 -0.10 1.03 16 20 N -0.88 -25.58 13.96 55.50 0.77 -24.81 16 21 Si 0.88 19.13 27.74 -169.99 -4.71 14.41 16 22 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 23 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 24 H -0.27 -5.30 6.52 56.52 0.37 -4.93 16 25 C -0.17 -1.58 5.36 -90.62 -0.49 -2.07 16 26 C -0.17 -1.57 10.18 -26.73 -0.27 -1.84 16 27 C -0.18 -1.82 9.73 -26.73 -0.26 -2.08 16 28 C -0.09 -0.71 7.18 -27.01 -0.19 -0.91 16 29 H 0.11 0.71 8.06 -52.49 -0.42 0.29 16 30 H 0.10 0.66 8.06 -52.48 -0.42 0.24 16 31 H 0.08 0.78 8.10 -51.93 -0.42 0.36 16 32 H 0.11 1.14 7.42 -51.93 -0.39 0.76 16 33 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.07 0.60 7.70 -51.93 -0.40 0.20 16 35 H 0.06 0.57 7.04 -51.93 -0.37 0.20 16 36 H 0.40 3.43 7.05 -40.82 -0.29 3.15 16 37 H 0.03 0.30 8.14 -51.93 -0.42 -0.13 16 38 H 0.09 0.91 8.14 -51.93 -0.42 0.48 16 39 H 0.35 5.24 7.28 -39.29 -0.29 4.95 16 40 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 41 H 0.09 1.26 8.14 -51.93 -0.42 0.83 16 42 H 0.37 7.57 5.76 -40.82 -0.24 7.34 16 43 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 44 H 0.10 0.84 8.11 -51.93 -0.42 0.42 16 45 H 0.10 0.97 8.05 -51.93 -0.42 0.55 16 46 H 0.09 0.72 8.14 -51.93 -0.42 0.29 16 47 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 48 H 0.12 1.45 5.02 -51.93 -0.26 1.19 16 49 H 0.09 0.77 8.09 -51.93 -0.42 0.35 16 50 H 0.08 0.56 8.10 -51.93 -0.42 0.14 16 LS Contribution 405.18 15.07 6.11 6.11 Total: -1.00 -33.34 405.18 -8.85 -42.19 By element: Atomic # 1 Polarization: 26.00 SS G_CDS: -8.06 Total: 17.94 kcal Atomic # 6 Polarization: 0.81 SS G_CDS: -2.13 Total: -1.32 kcal Atomic # 7 Polarization: -56.49 SS G_CDS: -0.21 Total: -56.71 kcal Atomic # 8 Polarization: -22.78 SS G_CDS: 0.16 Total: -22.62 kcal Atomic # 14 Polarization: 19.13 SS G_CDS: -4.71 Total: 14.41 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -33.34 -8.85 -42.19 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001723334205.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.199 kcal (2) G-P(sol) polarization free energy of solvation -33.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.192 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds