Wall clock time and date at job start Tue Mar 31 2020 18:27:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.51586 * 135.77734 * 2 1 4 4 C 1.53847 * 86.75015 * 154.84876 * 3 2 1 5 5 C 1.52998 * 113.66147 * 270.21860 * 4 3 2 6 6 C 1.50703 * 113.65309 * 139.27100 * 4 3 2 7 7 O 1.21288 * 120.00048 * 359.97438 * 6 4 3 8 8 N 1.34778 * 120.00070 * 179.97438 * 6 4 3 9 9 C 1.46496 * 120.00031 * 179.97438 * 8 6 4 10 10 H 1.09004 * 109.47055 * 35.00639 * 9 8 6 11 11 C 1.53006 * 109.47070 * 154.99902 * 9 8 6 12 12 N 1.46898 * 109.47006 * 305.00086 * 11 9 8 13 13 C 1.46903 * 110.99673 * 179.97438 * 12 11 9 14 14 C 1.50701 * 109.47054 * 180.02562 * 13 12 11 15 15 O 1.21301 * 119.99879 * 0.02562 * 14 13 12 16 16 N 1.34770 * 120.00204 * 180.02562 * 14 13 12 17 17 C 1.37099 * 120.00275 * 180.02562 * 16 14 13 18 18 H 1.08003 * 119.99797 * 359.97438 * 17 16 14 19 19 C 1.38953 * 120.00254 * 180.02562 * 17 16 14 20 20 N 1.31407 * 119.99867 * 180.02562 * 19 17 16 21 21 Si 1.86794 * 119.99724 * 359.97438 * 19 17 16 22 22 H 1.48508 * 109.46905 * 90.00811 * 21 19 17 23 23 H 1.48498 * 109.47146 * 210.00027 * 21 19 17 24 24 H 1.48496 * 109.47415 * 330.00587 * 21 19 17 25 25 C 1.52999 * 109.47330 * 274.99914 * 9 8 6 26 26 C 1.53001 * 117.49841 * 128.62352 * 25 9 8 27 27 C 1.52996 * 117.49732 * 60.00194 * 25 9 8 28 28 C 1.51576 * 135.78640 * 180.02562 * 2 1 3 29 29 H 1.07993 * 120.00011 * 359.97438 * 1 2 3 30 30 H 1.08005 * 119.99431 * 179.97438 * 1 2 3 31 31 H 1.08994 * 113.66523 * 40.39189 * 3 2 1 32 32 H 1.08994 * 113.75271 * 269.32320 * 3 2 1 33 33 H 1.08997 * 109.47173 * 298.34535 * 5 4 3 34 34 H 1.09003 * 109.46663 * 58.33426 * 5 4 3 35 35 H 1.08997 * 109.46881 * 178.33793 * 5 4 3 36 36 H 0.97002 * 119.99581 * 359.97438 * 8 6 4 37 37 H 1.09001 * 109.47002 * 64.99868 * 11 9 8 38 38 H 1.08993 * 109.46955 * 185.00306 * 11 9 8 39 39 H 1.00906 * 111.00348 * 56.04933 * 12 11 9 40 40 H 1.08993 * 109.47323 * 299.99830 * 13 12 11 41 41 H 1.08995 * 109.46831 * 60.00909 * 13 12 11 42 42 H 0.96999 * 120.00258 * 0.02562 * 16 14 13 43 43 H 0.97003 * 120.00051 * 179.97438 * 20 19 17 44 44 H 1.09003 * 115.54942 * 274.33351 * 25 9 8 45 45 H 1.09000 * 117.49788 * 359.97438 * 26 25 9 46 46 H 1.08993 * 117.49678 * 145.02352 * 26 25 9 47 47 H 1.09005 * 117.49907 * 214.97922 * 27 25 9 48 48 H 1.09005 * 117.50127 * 359.97438 * 27 25 9 49 49 H 1.08993 * 113.66945 * 90.68182 * 28 2 1 50 50 H 1.09002 * 113.66056 * 319.61172 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.3964 1.0572 0.0000 4 6 3.3036 0.0000 0.6528 5 6 3.2463 0.0014 2.1817 6 6 4.7130 0.0002 0.1193 7 8 5.0341 0.7879 -0.7452 8 7 5.6167 -0.8751 0.6027 9 6 6.9866 -0.8754 0.0837 10 1 7.2858 0.1458 -0.1526 11 6 7.9319 -1.4523 1.1394 12 7 7.7809 -0.7029 2.3938 13 6 8.6749 -1.2307 3.4331 14 6 8.4919 -0.4392 4.7025 15 8 7.6947 0.4743 4.7379 16 7 9.2139 -0.7464 5.7982 17 6 9.0470 -0.0268 6.9531 18 1 8.3372 0.7866 6.9847 19 6 9.7918 -0.3431 8.0827 20 7 9.6314 0.3464 9.1898 21 14 11.0199 -1.7495 8.0278 22 1 12.3457 -1.2325 7.6031 23 1 11.1355 -2.3587 9.3772 24 1 10.5552 -2.7751 7.0597 25 6 7.0522 -1.7320 -1.1823 26 6 7.6869 -1.1068 -2.4262 27 6 6.1726 -1.3160 -2.3631 28 6 2.3965 -1.0570 -0.0005 29 1 -0.5400 0.9352 0.0004 30 1 -0.5399 -0.9354 -0.0004 31 1 2.1796 1.9072 0.6469 32 1 2.7192 1.3550 -0.9975 33 1 3.5890 0.9655 2.5573 34 1 2.2203 -0.1713 2.5069 35 1 3.8885 -0.7891 2.5700 36 1 5.3599 -1.5049 1.2944 37 1 7.6883 -2.5008 1.3110 38 1 8.9608 -1.3709 0.7892 39 1 6.8212 -0.7092 2.7055 40 1 8.4361 -2.2775 3.6206 41 1 9.7091 -1.1480 3.0990 42 1 9.8517 -1.4767 5.7698 43 1 10.1510 0.1253 9.9785 44 1 7.2060 -2.7989 -1.0206 45 1 8.0574 -0.0851 -2.3427 46 1 8.2586 -1.7624 -3.0830 47 1 5.7481 -2.1093 -2.9784 48 1 5.5469 -0.4323 -2.2378 49 1 2.7184 -1.3532 -0.9988 50 1 2.1797 -1.9074 0.6461 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001723334205.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:27:15 Heat of formation + Delta-G solvation = -22.327566 kcal Electronic energy + Delta-G solvation = -29220.245243 eV Core-core repulsion = 25248.656408 eV Total energy + Delta-G solvation = -3971.588835 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.79964 -40.33071 -39.66116 -38.00782 -36.82697 -35.92756 -34.79749 -33.73594 -32.48927 -30.59876 -28.64458 -28.01234 -26.89670 -25.72671 -24.58375 -23.19168 -23.03203 -21.42716 -21.23364 -20.81510 -20.21086 -18.70064 -18.11256 -17.69970 -17.44090 -16.99006 -16.80839 -16.51046 -15.95513 -15.80636 -15.66115 -15.46537 -15.34143 -15.09525 -14.89426 -14.48875 -14.45767 -14.26816 -13.96393 -13.43067 -13.30354 -13.21664 -13.02853 -12.92660 -12.84273 -12.77503 -12.56252 -12.40246 -12.30823 -12.27289 -11.97072 -11.84031 -11.50672 -11.25498 -11.16072 -11.12872 -10.60602 -10.44079 -10.24264 -10.00699 -9.97696 -9.32426 -8.40698 -6.01753 1.30500 1.30588 1.36925 1.45536 1.61891 1.96791 2.15037 2.23928 2.68539 3.02468 3.15859 3.32421 3.34893 3.48221 3.56857 3.78609 3.88356 3.96952 4.01978 4.11472 4.16590 4.25218 4.31106 4.42509 4.44299 4.50637 4.62215 4.64503 4.74735 4.77217 4.78293 4.82794 4.84477 4.91482 4.94372 4.99814 5.06332 5.20006 5.24687 5.29936 5.37889 5.52535 5.54821 5.55991 5.89299 5.99408 6.02528 6.35678 6.55285 6.60378 6.89022 7.28166 7.40672 7.97734 8.77051 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.012584 B = 0.002636 C = 0.002271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2224.439259 B =10618.064286 C =12328.722744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.161 4.161 3 C -0.090 4.090 4 C -0.103 4.103 5 C -0.125 4.125 6 C 0.533 3.467 7 O -0.572 6.572 8 N -0.707 5.707 9 C 0.180 3.820 10 H 0.063 0.937 11 C 0.062 3.938 12 N -0.691 5.691 13 C 0.062 3.938 14 C 0.446 3.554 15 O -0.615 6.615 16 N -0.590 5.590 17 C -0.328 4.328 18 H 0.053 0.947 19 C -0.017 4.017 20 N -0.936 5.936 21 Si 0.966 3.034 22 H -0.259 1.259 23 H -0.276 1.276 24 H -0.227 1.227 25 C -0.158 4.158 26 C -0.168 4.168 27 C -0.190 4.190 28 C -0.074 4.074 29 H 0.112 0.888 30 H 0.123 0.877 31 H 0.072 0.928 32 H 0.089 0.911 33 H 0.048 0.952 34 H 0.081 0.919 35 H 0.072 0.928 36 H 0.407 0.593 37 H 0.064 0.936 38 H 0.100 0.900 39 H 0.343 0.657 40 H 0.084 0.916 41 H 0.115 0.885 42 H 0.390 0.610 43 H 0.279 0.721 44 H 0.127 0.873 45 H 0.080 0.920 46 H 0.112 0.888 47 H 0.099 0.901 48 H 0.091 0.909 49 H 0.094 0.906 50 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.921 -13.635 -22.824 28.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.161 4.161 3 C -0.127 4.127 4 C -0.106 4.106 5 C -0.182 4.182 6 C 0.321 3.679 7 O -0.452 6.452 8 N -0.358 5.358 9 C 0.075 3.925 10 H 0.081 0.919 11 C -0.067 4.067 12 N -0.324 5.324 13 C -0.070 4.070 14 C 0.234 3.766 15 O -0.499 6.499 16 N -0.232 5.232 17 C -0.458 4.458 18 H 0.072 0.928 19 C -0.215 4.215 20 N -0.576 5.576 21 Si 0.786 3.214 22 H -0.184 1.184 23 H -0.201 1.201 24 H -0.151 1.151 25 C -0.178 4.178 26 C -0.205 4.205 27 C -0.227 4.227 28 C -0.111 4.111 29 H 0.130 0.870 30 H 0.141 0.859 31 H 0.091 0.909 32 H 0.107 0.893 33 H 0.067 0.933 34 H 0.100 0.900 35 H 0.091 0.909 36 H 0.243 0.757 37 H 0.082 0.918 38 H 0.118 0.882 39 H 0.163 0.837 40 H 0.102 0.898 41 H 0.133 0.867 42 H 0.226 0.774 43 H 0.088 0.912 44 H 0.145 0.855 45 H 0.099 0.901 46 H 0.131 0.869 47 H 0.118 0.882 48 H 0.109 0.891 49 H 0.112 0.888 50 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -9.712 -11.930 -23.367 27.976 hybrid contribution 0.182 -0.823 1.223 1.485 sum -9.530 -12.753 -22.145 27.273 Atomic orbital electron populations 1.23127 0.92969 1.03315 1.00308 1.22736 0.94131 0.97315 1.01932 1.22220 0.93262 0.96105 1.01153 1.21961 0.90099 1.01030 0.97481 1.21568 1.03710 1.02497 0.90460 1.20563 0.87177 0.79212 0.80944 1.90603 1.80623 1.40686 1.33299 1.45919 1.10607 1.37498 1.41741 1.20492 0.80998 0.99017 0.91991 0.91926 1.22278 1.00758 0.95743 0.87957 1.59957 1.11416 1.57307 1.03743 1.21651 1.00347 0.96613 0.88368 1.21051 0.83004 0.86683 0.85812 1.90559 1.39983 1.34380 1.84996 1.42020 1.38654 1.32174 1.10369 1.18994 1.23259 1.14366 0.89132 0.92848 1.26146 1.00107 1.01438 0.93832 1.69810 1.42565 1.42324 1.02938 0.85347 0.78383 0.78159 0.79501 1.18350 1.20129 1.15058 1.22622 1.06180 1.00204 0.88745 1.22954 0.95669 1.01738 1.00140 1.23176 0.94301 1.03869 1.01361 1.22196 0.91934 0.95767 1.01210 0.87023 0.85903 0.90935 0.89300 0.93284 0.90026 0.90949 0.75680 0.91776 0.88208 0.83718 0.89809 0.86661 0.77409 0.91174 0.85488 0.90136 0.86939 0.88216 0.89099 0.88820 0.88196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.14 14.71 67.78 1.00 -1.14 16 2 C -0.16 -2.66 6.60 -15.99 -0.11 -2.77 16 3 C -0.09 -1.89 6.98 30.42 0.21 -1.68 16 4 C -0.10 -2.03 1.27 -52.41 -0.07 -2.09 16 5 C -0.12 -2.43 8.99 71.98 0.65 -1.78 16 6 C 0.53 12.93 6.26 87.66 0.55 13.48 16 7 O -0.57 -18.01 12.93 -3.05 -0.04 -18.05 16 8 N -0.71 -14.01 4.22 -442.52 -1.87 -15.88 16 9 C 0.18 3.66 2.58 44.99 0.12 3.78 16 10 H 0.06 1.76 7.33 -2.39 -0.02 1.74 16 11 C 0.06 1.11 5.28 86.31 0.46 1.57 16 12 N -0.69 -18.82 6.12 -517.94 -3.17 -21.99 16 13 C 0.06 1.74 6.17 85.56 0.53 2.27 16 14 C 0.45 19.54 7.82 87.66 0.69 20.22 16 15 O -0.61 -33.65 15.78 -3.09 -0.05 -33.69 16 16 N -0.59 -27.12 5.09 -306.98 -1.56 -28.68 16 17 C -0.33 -19.06 10.16 84.04 0.85 -18.20 16 18 H 0.05 3.72 7.39 -2.91 -0.02 3.70 16 19 C -0.02 -0.92 5.50 84.93 0.47 -0.46 16 20 N -0.94 -56.26 13.96 21.66 0.30 -55.95 16 21 Si 0.97 38.01 27.74 68.60 1.90 39.91 16 22 H -0.26 -9.73 7.11 99.48 0.71 -9.03 16 23 H -0.28 -10.83 7.11 99.48 0.71 -10.12 16 24 H -0.23 -7.33 6.52 99.48 0.65 -6.68 16 25 C -0.16 -2.58 5.36 -10.79 -0.06 -2.63 16 26 C -0.17 -2.87 10.18 30.59 0.31 -2.56 16 27 C -0.19 -3.61 9.73 30.59 0.30 -3.32 16 28 C -0.07 -1.11 7.18 30.41 0.22 -0.90 16 29 H 0.11 1.35 8.06 -2.91 -0.02 1.32 16 30 H 0.12 1.21 8.06 -2.91 -0.02 1.18 16 31 H 0.07 1.55 8.10 -2.39 -0.02 1.53 16 32 H 0.09 2.13 7.42 -2.39 -0.02 2.11 16 33 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 34 H 0.08 1.36 7.70 -2.39 -0.02 1.34 16 35 H 0.07 1.25 7.04 -2.39 -0.02 1.23 16 36 H 0.41 6.35 7.05 -92.71 -0.65 5.70 16 37 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 38 H 0.10 1.64 8.14 -2.39 -0.02 1.62 16 39 H 0.34 9.91 7.28 -89.69 -0.65 9.26 16 40 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 41 H 0.12 2.70 8.14 -2.39 -0.02 2.68 16 42 H 0.39 14.61 5.76 -92.71 -0.53 14.08 16 43 H 0.28 15.30 8.31 -92.71 -0.77 14.53 16 44 H 0.13 1.51 8.11 -2.39 -0.02 1.49 16 45 H 0.08 1.64 8.05 -2.39 -0.02 1.62 16 46 H 0.11 1.46 8.14 -2.39 -0.02 1.44 16 47 H 0.10 1.57 8.14 -2.38 -0.02 1.55 16 48 H 0.09 2.31 5.02 -2.38 -0.01 2.30 16 49 H 0.09 1.43 8.09 -2.39 -0.02 1.41 16 50 H 0.10 1.13 8.10 -2.39 -0.02 1.11 16 Total: -1.00 -80.45 405.18 0.69 -79.76 By element: Atomic # 1 Polarization: 51.73 SS G_CDS: -0.93 Total: 50.80 kcal Atomic # 6 Polarization: -2.33 SS G_CDS: 6.11 Total: 3.78 kcal Atomic # 7 Polarization: -116.21 SS G_CDS: -6.30 Total: -122.51 kcal Atomic # 8 Polarization: -51.66 SS G_CDS: -0.09 Total: -51.75 kcal Atomic # 14 Polarization: 38.01 SS G_CDS: 1.90 Total: 39.91 kcal Total: -80.45 0.69 -79.76 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001723334205.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.433 kcal (2) G-P(sol) polarization free energy of solvation -80.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.761 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds