Wall clock time and date at job start Tue Mar 31 2020 19:14:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42911 * 114.00064 * 2 1 4 4 C 1.52996 * 109.47233 * 180.02562 * 3 2 1 5 5 N 1.46494 * 109.47349 * 64.99705 * 4 3 2 6 6 C 1.36944 * 120.00037 * 270.00255 * 5 4 3 7 7 H 1.07997 * 120.00033 * 143.92420 * 6 5 4 8 8 C 1.38814 * 120.00151 * 323.92042 * 6 5 4 9 9 N 1.31625 * 119.99792 * 338.21778 * 8 6 5 10 10 Si 1.86792 * 120.00168 * 158.21737 * 8 6 5 11 11 H 1.48498 * 109.47441 * 90.00477 * 10 8 6 12 12 H 1.48508 * 109.47192 * 210.00525 * 10 8 6 13 13 H 1.48500 * 109.47118 * 330.00103 * 10 8 6 14 14 C 1.46502 * 120.00195 * 90.00144 * 5 4 3 15 15 C 1.53078 * 109.44206 * 116.48083 * 14 5 4 16 16 C 1.53189 * 109.29217 * 181.23811 * 15 14 5 17 17 N 1.46921 * 108.89553 * 305.57770 * 16 15 14 18 18 C 1.34780 * 120.63339 * 233.51800 * 17 16 15 19 19 O 1.21620 * 120.00217 * 175.02539 * 18 17 16 20 20 C 1.47268 * 119.99536 * 355.02580 * 18 17 16 21 21 C 1.46680 * 126.94461 * 325.56527 * 20 18 17 22 22 C 1.34490 * 106.33404 * 179.97438 * 21 20 18 23 23 N 1.36448 * 108.85314 * 0.02562 * 22 21 20 24 24 H 0.96999 * 124.84668 * 179.97438 * 23 22 21 25 25 C 1.34658 * 110.30042 * 359.74424 * 23 22 21 26 26 C 1.50693 * 125.80337 * 180.29823 * 25 23 22 27 27 C 1.46931 * 118.73993 * 53.53613 * 17 16 15 28 28 C 1.53037 * 109.45869 * 236.68782 * 14 5 4 29 29 H 1.09001 * 109.47131 * 60.00175 * 1 2 3 30 30 H 1.09000 * 109.46839 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.46835 * 299.99949 * 1 2 3 32 32 H 1.08996 * 109.46945 * 59.99890 * 3 2 1 33 33 H 1.09005 * 109.46575 * 300.00121 * 3 2 1 34 34 H 1.09006 * 109.47042 * 305.00083 * 4 3 2 35 35 H 1.08997 * 109.47130 * 184.99999 * 4 3 2 36 36 H 0.96993 * 120.00009 * 179.97438 * 9 8 6 37 37 H 1.08998 * 109.45406 * 356.65523 * 14 5 4 38 38 H 1.08999 * 109.38724 * 61.36056 * 15 14 5 39 39 H 1.09001 * 109.61879 * 301.25429 * 15 14 5 40 40 H 1.09006 * 109.58446 * 185.71759 * 16 15 14 41 41 H 1.09000 * 109.58525 * 65.43839 * 16 15 14 42 42 H 1.08004 * 126.83349 * 359.96078 * 21 20 18 43 43 H 1.08003 * 125.57093 * 180.02562 * 22 21 20 44 44 H 1.09001 * 109.47054 * 270.13580 * 26 25 23 45 45 H 1.09003 * 109.47368 * 30.13553 * 26 25 23 46 46 H 1.09003 * 109.47275 * 150.13793 * 26 25 23 47 47 H 1.09005 * 109.58461 * 66.18007 * 27 17 16 48 48 H 1.08994 * 109.58611 * 186.46168 * 27 17 16 49 49 H 1.08998 * 109.50424 * 58.67392 * 28 14 5 50 50 H 1.09003 * 109.52476 * 298.59176 * 28 14 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1848 -0.0006 5 7 3.9757 0.5645 -1.2526 6 6 4.0968 -0.7970 -1.3368 7 1 3.8445 -1.3058 -2.2553 8 6 4.5439 -1.5231 -0.2414 9 7 5.2436 -0.9280 0.7014 10 14 4.1527 -3.3445 -0.1054 11 1 5.2314 -4.1323 -0.7541 12 1 4.0553 -3.7243 1.3270 13 1 2.8602 -3.6249 -0.7807 14 6 4.2865 1.4007 -2.4148 15 6 5.7679 1.2499 -2.7695 16 6 6.0960 2.1490 -3.9655 17 7 5.1743 1.8332 -5.0652 18 6 5.6460 1.5233 -6.2891 19 8 4.8788 1.1759 -7.1666 20 6 7.0905 1.6054 -6.5639 21 6 8.0404 2.5740 -6.0063 22 6 9.2408 2.2725 -6.5324 23 7 9.1007 1.2005 -7.3649 24 1 9.8224 0.7902 -7.8665 25 6 7.8183 0.7904 -7.3867 26 6 7.2766 -0.3681 -8.1838 27 6 3.7284 1.8620 -4.8055 28 6 3.4256 0.9635 -3.6022 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.6887 1.8464 0.8899 33 1 1.6886 1.8464 -0.8900 34 1 3.8515 0.5683 0.8410 35 1 3.9785 2.1766 0.0889 36 1 5.5557 -1.4352 1.4670 37 1 4.0760 2.4436 -2.1782 38 1 5.9743 0.2112 -3.0276 39 1 6.3801 1.5417 -1.9161 40 1 7.1224 1.9703 -4.2863 41 1 5.9793 3.1944 -3.6797 42 1 7.8197 3.3710 -5.3117 43 1 10.1647 2.7936 -6.3291 44 1 6.9599 -0.0169 -9.1658 45 1 8.0537 -1.1233 -8.3012 46 1 6.4243 -0.8020 -7.6609 47 1 3.4168 2.8833 -4.5864 48 1 3.1925 1.4963 -5.6813 49 1 2.3715 1.0508 -3.3391 50 1 3.6529 -0.0722 -3.8552 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001723647658.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:14:33 Heat of formation + Delta-G solvation = -5.064270 kcal Electronic energy + Delta-G solvation = -30519.626301 eV Core-core repulsion = 26548.786058 eV Total energy + Delta-G solvation = -3970.840243 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -41.29256 -39.27710 -37.44458 -36.67810 -34.80631 -32.19077 -31.60217 -31.30734 -30.42710 -30.03462 -28.05066 -26.44484 -25.61278 -24.75062 -23.44169 -22.70818 -21.78336 -20.74479 -20.36340 -19.54996 -18.13114 -17.63701 -16.38291 -15.94253 -15.57090 -15.39779 -15.04196 -14.96090 -14.69433 -14.24847 -13.97080 -13.87877 -13.71883 -13.49366 -13.39703 -13.27307 -12.93942 -12.64637 -12.58683 -12.52782 -12.12829 -11.73588 -11.66840 -11.63215 -11.38443 -11.24330 -10.84680 -10.71199 -10.61972 -10.53309 -10.36674 -9.94973 -9.79124 -9.71987 -9.51533 -9.33151 -8.76868 -8.71044 -8.29197 -8.27469 -8.04183 -6.44066 -5.62570 -3.15691 1.93218 2.43649 3.07120 3.45332 3.48511 3.55458 3.62695 3.71534 4.63046 4.74756 4.79700 4.89450 5.12049 5.17574 5.32668 5.45167 5.49451 5.54480 5.57272 5.66254 5.72915 5.78905 5.83999 5.86058 5.90571 5.92709 5.95862 6.09765 6.11191 6.12342 6.17426 6.22158 6.32185 6.41109 6.51235 6.58996 6.72774 6.74257 6.80320 6.80976 6.92848 7.05914 7.23056 7.31928 7.39982 7.74212 7.89135 7.99474 8.13818 8.63508 8.68296 9.33757 9.98702 10.52646 11.39176 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.013814 B = 0.003440 C = 0.003195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2026.498464 B = 8137.877254 C = 8761.568165 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.353 6.353 3 C 0.047 3.953 4 C 0.142 3.858 5 N -0.572 5.572 6 C -0.228 4.228 7 H 0.056 0.944 8 C 0.017 3.983 9 N -0.894 5.894 10 Si 0.893 3.107 11 H -0.293 1.293 12 H -0.292 1.292 13 H -0.279 1.279 14 C 0.177 3.823 15 C -0.134 4.134 16 C 0.099 3.901 17 N -0.597 5.597 18 C 0.590 3.410 19 O -0.560 6.560 20 C -0.222 4.222 21 C -0.167 4.167 22 C -0.020 4.020 23 N -0.555 5.555 24 H 0.414 0.586 25 C 0.093 3.907 26 C -0.088 4.088 27 C 0.115 3.885 28 C -0.136 4.136 29 H 0.028 0.972 30 H 0.073 0.927 31 H 0.025 0.975 32 H 0.022 0.978 33 H 0.026 0.974 34 H 0.106 0.894 35 H 0.038 0.962 36 H 0.250 0.750 37 H 0.045 0.955 38 H 0.070 0.930 39 H 0.069 0.931 40 H 0.092 0.908 41 H 0.057 0.943 42 H 0.148 0.852 43 H 0.168 0.832 44 H 0.078 0.922 45 H 0.063 0.937 46 H 0.088 0.912 47 H 0.057 0.943 48 H 0.083 0.917 49 H 0.064 0.936 50 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.079 8.166 -11.294 14.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.271 6.271 3 C -0.032 4.032 4 C 0.015 3.985 5 N -0.291 5.291 6 C -0.358 4.358 7 H 0.073 0.927 8 C -0.182 4.182 9 N -0.538 5.538 10 Si 0.723 3.277 11 H -0.220 1.220 12 H -0.218 1.218 13 H -0.204 1.204 14 C 0.069 3.931 15 C -0.174 4.174 16 C -0.024 4.024 17 N -0.329 5.329 18 C 0.380 3.620 19 O -0.440 6.440 20 C -0.232 4.232 21 C -0.191 4.191 22 C -0.147 4.147 23 N -0.151 5.151 24 H 0.250 0.750 25 C -0.024 4.024 26 C -0.145 4.145 27 C -0.008 4.008 28 C -0.176 4.176 29 H 0.047 0.953 30 H 0.092 0.908 31 H 0.044 0.956 32 H 0.040 0.960 33 H 0.044 0.956 34 H 0.123 0.877 35 H 0.056 0.944 36 H 0.060 0.940 37 H 0.063 0.937 38 H 0.088 0.912 39 H 0.088 0.912 40 H 0.110 0.890 41 H 0.075 0.925 42 H 0.165 0.835 43 H 0.185 0.815 44 H 0.097 0.903 45 H 0.082 0.918 46 H 0.107 0.893 47 H 0.076 0.924 48 H 0.102 0.898 49 H 0.083 0.917 50 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 4.963 7.718 -11.618 14.804 hybrid contribution -0.104 -0.778 0.200 0.809 sum 4.859 6.940 -11.418 14.218 Atomic orbital electron populations 1.22624 0.84412 1.01398 0.98320 1.88230 1.16389 1.27675 1.94790 1.23456 0.99064 0.84073 0.96634 1.21062 0.87363 0.96570 0.93504 1.43760 1.75185 1.02723 1.07448 1.18735 1.36526 0.81572 0.98972 0.92672 1.24936 0.96992 0.97271 0.99014 1.69945 1.36122 1.35610 1.12166 0.86459 0.78293 0.86195 0.76705 1.21999 1.21847 1.20450 1.20344 0.91515 0.93177 0.88023 1.22322 0.99340 1.00172 0.95555 1.22193 0.94135 0.98669 0.87399 1.47904 1.07320 1.68157 1.09545 1.17407 0.86605 0.76208 0.81761 1.90713 1.58719 1.48980 1.45582 1.20146 0.93532 1.02816 1.06718 1.22102 0.91481 1.01893 1.03615 1.21704 1.00041 0.93829 0.99139 1.41517 1.08598 1.26864 1.38094 0.75030 1.20224 0.83750 0.98561 0.99900 1.20418 1.01364 0.93185 0.99547 1.21635 0.80176 0.99548 0.99408 1.22299 1.00407 1.00150 0.94779 0.95337 0.90827 0.95638 0.95970 0.95591 0.87660 0.94403 0.93975 0.93689 0.91170 0.91196 0.88956 0.92510 0.83463 0.81470 0.90345 0.91845 0.89296 0.92431 0.89831 0.91735 0.91282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.51 11.01 101.05 1.11 1.62 16 2 O -0.35 -7.82 10.18 -35.23 -0.36 -8.18 16 3 C 0.05 0.95 6.28 37.16 0.23 1.18 16 4 C 0.14 3.21 5.68 -4.05 -0.02 3.19 16 5 N -0.57 -13.47 2.35 -165.60 -0.39 -13.86 16 6 C -0.23 -6.07 7.84 -15.06 -0.12 -6.19 16 7 H 0.06 1.53 6.76 -52.49 -0.35 1.18 16 8 C 0.02 0.46 4.96 -17.43 -0.09 0.37 16 9 N -0.89 -25.40 11.39 55.49 0.63 -24.77 16 10 Si 0.89 22.48 29.61 -169.99 -5.03 17.45 16 11 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 12 H -0.29 -7.42 7.11 56.52 0.40 -7.01 16 13 H -0.28 -7.07 7.11 56.52 0.40 -6.67 16 14 C 0.18 3.50 2.58 -67.87 -0.18 3.32 16 15 C -0.13 -2.53 5.37 -26.59 -0.14 -2.67 16 16 C 0.10 1.51 5.41 -3.71 -0.02 1.49 16 17 N -0.60 -9.91 2.97 -174.09 -0.52 -10.43 16 18 C 0.59 10.30 7.39 -12.59 -0.09 10.21 16 19 O -0.56 -11.12 15.48 5.26 0.08 -11.03 16 20 C -0.22 -3.29 5.51 -103.35 -0.57 -3.86 16 21 C -0.17 -2.00 8.62 -37.50 -0.32 -2.32 16 22 C -0.02 -0.19 11.89 -16.82 -0.20 -0.39 16 23 N -0.55 -5.15 5.90 -9.11 -0.05 -5.20 16 24 H 0.41 2.37 8.96 -40.82 -0.37 2.01 16 25 C 0.09 1.16 7.17 -81.89 -0.59 0.57 16 26 C -0.09 -0.97 9.81 36.00 0.35 -0.62 16 27 C 0.12 1.90 6.44 -3.71 -0.02 1.88 16 28 C -0.14 -2.56 5.24 -26.61 -0.14 -2.70 16 29 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 31 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.03 0.50 8.14 -51.93 -0.42 0.07 16 34 H 0.11 2.78 5.42 -51.93 -0.28 2.50 16 35 H 0.04 0.79 7.95 -51.93 -0.41 0.37 16 36 H 0.25 6.98 8.31 -40.82 -0.34 6.64 16 37 H 0.04 0.83 7.82 -51.93 -0.41 0.43 16 38 H 0.07 1.54 7.77 -51.93 -0.40 1.14 16 39 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 40 H 0.09 1.33 4.38 -51.93 -0.23 1.10 16 41 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 42 H 0.15 1.58 7.03 -52.48 -0.37 1.21 16 43 H 0.17 1.01 8.06 -52.48 -0.42 0.59 16 44 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 45 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 46 H 0.09 1.19 7.50 -51.93 -0.39 0.80 16 47 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 48 H 0.08 1.44 6.99 -51.93 -0.36 1.07 16 49 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 50 H 0.07 1.48 6.95 -51.93 -0.36 1.12 16 LS Contribution 393.87 15.07 5.94 5.94 Total: -1.00 -33.06 393.87 -8.65 -41.70 By element: Atomic # 1 Polarization: 11.45 SS G_CDS: -8.14 Total: 3.31 kcal Atomic # 6 Polarization: 5.89 SS G_CDS: -0.80 Total: 5.09 kcal Atomic # 7 Polarization: -53.93 SS G_CDS: -0.33 Total: -54.26 kcal Atomic # 8 Polarization: -18.94 SS G_CDS: -0.28 Total: -19.22 kcal Atomic # 14 Polarization: 22.48 SS G_CDS: -5.03 Total: 17.45 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -33.06 -8.65 -41.70 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001723647658.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.640 kcal (2) G-P(sol) polarization free energy of solvation -33.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.704 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds