Wall clock time and date at job start Tue Mar 31 2020 18:38:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.29439 * 117.96565 * 2 1 4 4 C 1.50698 * 117.96239 * 359.53183 * 3 2 1 5 5 C 1.50165 * 124.15072 * 179.73680 * 3 2 1 6 6 C 1.53022 * 110.09293 * 16.71990 * 5 3 2 7 7 H 1.08995 * 109.64734 * 70.67901 * 6 5 3 8 8 C 1.50707 * 109.64178 * 191.09544 * 6 5 3 9 9 O 1.21274 * 119.99835 * 119.57744 * 8 6 5 10 10 N 1.34780 * 119.99659 * 299.57903 * 8 6 5 11 11 C 1.46507 * 119.99553 * 180.02562 * 10 8 6 12 12 C 1.53511 * 114.16549 * 154.99622 * 11 10 8 13 13 N 1.47486 * 87.93043 * 87.62515 * 12 11 10 14 14 C 1.46898 * 111.00342 * 138.70348 * 13 12 11 15 15 C 1.50694 * 109.47202 * 170.00052 * 14 13 12 16 16 O 1.21287 * 120.00200 * 359.97438 * 15 14 13 17 17 N 1.34776 * 120.00051 * 179.97438 * 15 14 13 18 18 C 1.37097 * 120.00114 * 179.97438 * 17 15 14 19 19 H 1.08000 * 120.00040 * 0.02562 * 18 17 15 20 20 C 1.38956 * 119.99963 * 179.97438 * 18 17 15 21 21 N 1.31410 * 120.00149 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 119.99932 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47068 * 0.02562 * 22 20 18 24 24 H 1.48501 * 109.46995 * 120.00304 * 22 20 18 25 25 H 1.48494 * 109.47447 * 240.00037 * 22 20 18 26 26 C 1.47477 * 87.83633 * 27.00442 * 13 12 11 27 27 C 1.53387 * 108.61369 * 310.88225 * 6 5 3 28 28 C 1.50073 * 117.96233 * 179.97438 * 2 1 3 29 29 H 1.09000 * 109.47536 * 175.20685 * 1 2 3 30 30 H 1.09000 * 109.47043 * 295.20786 * 1 2 3 31 31 H 1.09003 * 109.47046 * 55.20674 * 1 2 3 32 32 H 1.09000 * 109.46841 * 5.26513 * 4 3 2 33 33 H 1.09000 * 109.47543 * 125.26130 * 4 3 2 34 34 H 1.09005 * 109.47131 * 245.26604 * 4 3 2 35 35 H 1.08998 * 109.21362 * 256.63429 * 5 3 2 36 36 H 1.09002 * 109.55916 * 137.01879 * 5 3 2 37 37 H 0.97001 * 120.00316 * 359.97438 * 10 8 6 38 38 H 1.08996 * 113.38406 * 21.91716 * 11 10 8 39 39 H 1.08995 * 113.48474 * 332.85738 * 12 11 10 40 40 H 1.09006 * 113.47227 * 202.38359 * 12 11 10 41 41 H 1.08998 * 109.47043 * 49.99598 * 14 13 12 42 42 H 1.09003 * 109.46425 * 289.99923 * 14 13 12 43 43 H 0.97004 * 119.99979 * 359.97438 * 17 15 14 44 44 H 0.97000 * 119.99725 * 0.02562 * 21 20 18 45 45 H 1.09003 * 113.47343 * 87.75784 * 26 13 12 46 46 H 1.09004 * 113.47822 * 218.22237 * 26 13 12 47 47 H 1.09006 * 109.64650 * 187.01689 * 27 6 5 48 48 H 1.08997 * 109.64367 * 307.64612 * 27 6 5 49 49 H 1.08999 * 109.36004 * 76.94767 * 28 2 1 50 50 H 1.09002 * 109.35622 * 317.36201 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1139 1.1432 0.0000 4 6 1.2697 2.3915 -0.0109 5 6 3.6068 1.3050 0.0057 6 6 4.2794 -0.0075 -0.4022 7 1 4.1093 -0.1923 -1.4628 8 6 5.7600 0.0772 -0.1340 9 8 6.2823 -0.7011 0.6356 10 7 6.5035 1.0180 -0.7493 11 6 7.9429 1.1000 -0.4890 12 6 8.7512 1.7436 -1.6243 13 7 8.4848 3.0529 -0.9998 14 6 9.6812 3.9047 -1.0317 15 6 9.3121 5.3050 -0.6150 16 8 8.1651 5.5679 -0.3209 17 7 10.2564 6.2655 -0.5692 18 6 9.9205 7.5397 -0.1906 19 1 8.8992 7.7736 0.0712 20 6 10.8943 8.5298 -0.1429 21 7 12.1371 8.2449 -0.4610 22 14 10.4368 10.2656 0.3736 23 1 8.9847 10.3247 0.6790 24 1 11.2122 10.6429 1.5826 25 1 10.7499 11.2091 -0.7295 26 6 8.3701 2.3507 0.2920 27 6 3.6702 -1.1472 0.4241 28 6 2.2106 -1.3255 0.0006 29 1 -0.3634 -1.0240 -0.0859 30 1 -0.3633 0.4377 0.9298 31 1 -0.3633 0.5864 -0.8440 32 1 0.2179 2.1195 0.0769 33 1 1.5515 3.0281 0.8278 34 1 1.4291 2.9298 -0.9452 35 1 3.9338 1.5824 1.0078 36 1 3.8915 2.0899 -0.6951 37 1 6.0858 1.6403 -1.3651 38 1 8.3677 0.1705 -0.1100 39 1 8.2901 1.6285 -2.6052 40 1 9.8054 1.4662 -1.6182 41 1 10.0882 3.9217 -2.0427 42 1 10.4289 3.5066 -0.3456 43 1 11.1738 6.0553 -0.8040 44 1 12.3746 7.3436 -0.7295 45 1 9.3225 2.2352 0.8094 46 1 7.5858 2.7500 0.9352 47 1 4.2209 -2.0695 0.2383 48 1 3.7162 -0.8966 1.4838 49 1 2.1749 -1.7540 -1.0010 50 1 1.7118 -1.9990 0.6975 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001732102477.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:38:28 Heat of formation + Delta-G solvation = -33.210737 kcal Electronic energy + Delta-G solvation = -28702.617049 eV Core-core repulsion = 24730.556284 eV Total energy + Delta-G solvation = -3972.060765 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.88279 -39.89520 -38.44639 -37.80883 -34.36332 -34.00394 -33.74737 -32.01447 -31.13928 -29.81232 -27.73709 -26.74778 -25.98230 -25.38562 -23.74481 -23.35432 -22.43135 -20.29869 -19.96217 -19.54129 -17.91504 -17.59408 -17.08099 -16.46967 -16.22423 -15.71144 -15.43154 -15.18084 -15.00817 -14.76152 -14.43404 -14.36677 -14.08072 -13.90796 -13.70931 -13.49003 -13.31216 -13.06825 -12.75895 -12.67706 -12.39918 -12.29789 -12.15111 -12.06527 -11.86599 -11.50586 -11.33797 -11.19871 -11.14901 -10.99843 -10.94255 -10.74281 -10.55821 -10.23196 -9.86818 -9.82509 -9.53751 -9.13666 -8.88901 -8.75448 -8.27747 -8.02394 -6.75137 -3.88135 1.93097 2.48113 2.97721 3.31314 3.34121 3.53450 3.84096 3.94633 4.24777 4.27456 4.34171 4.37510 4.58224 4.75422 4.78232 4.82088 4.88240 4.97043 5.10977 5.12896 5.16213 5.18473 5.26074 5.29110 5.34704 5.36649 5.44993 5.50948 5.54090 5.55031 5.58762 5.59866 5.64072 5.65772 5.71042 5.75701 5.81858 5.91727 5.95430 6.01211 6.04945 6.38331 6.40343 6.45331 6.81659 7.01510 7.42397 7.81551 8.08683 8.10974 8.60946 8.81495 9.48358 9.89768 10.68543 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.015165 B = 0.002184 C = 0.001950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1845.942616 B =12818.869469 C =14354.377093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.134 4.134 3 C -0.123 4.123 4 C -0.131 4.131 5 C -0.073 4.073 6 C -0.104 4.104 7 H 0.099 0.901 8 C 0.521 3.479 9 O -0.543 6.543 10 N -0.700 5.700 11 C 0.117 3.883 12 C -0.014 4.014 13 N -0.439 5.439 14 C 0.008 3.992 15 C 0.449 3.551 16 O -0.569 6.569 17 N -0.580 5.580 18 C -0.380 4.380 19 H 0.099 0.901 20 C -0.011 4.011 21 N -0.904 5.904 22 Si 1.096 2.904 23 H -0.284 1.284 24 H -0.284 1.284 25 H -0.284 1.284 26 C -0.009 4.009 27 C -0.098 4.098 28 C -0.080 4.080 29 H 0.057 0.943 30 H 0.064 0.936 31 H 0.064 0.936 32 H 0.069 0.931 33 H 0.065 0.935 34 H 0.066 0.934 35 H 0.079 0.921 36 H 0.081 0.919 37 H 0.409 0.591 38 H 0.110 0.890 39 H 0.089 0.911 40 H 0.080 0.920 41 H 0.088 0.912 42 H 0.060 0.940 43 H 0.374 0.626 44 H 0.261 0.739 45 H 0.076 0.924 46 H 0.090 0.910 47 H 0.075 0.925 48 H 0.071 0.929 49 H 0.072 0.928 50 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.394 -19.636 -2.469 25.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.134 4.134 3 C -0.123 4.123 4 C -0.188 4.188 5 C -0.110 4.110 6 C -0.126 4.126 7 H 0.117 0.883 8 C 0.308 3.692 9 O -0.420 6.420 10 N -0.350 5.350 11 C 0.010 3.990 12 C -0.144 4.144 13 N -0.161 5.161 14 C -0.125 4.125 15 C 0.235 3.765 16 O -0.451 6.451 17 N -0.218 5.218 18 C -0.509 4.509 19 H 0.117 0.883 20 C -0.213 4.213 21 N -0.543 5.543 22 Si 0.922 3.078 23 H -0.209 1.209 24 H -0.210 1.210 25 H -0.210 1.210 26 C -0.139 4.139 27 C -0.136 4.136 28 C -0.117 4.117 29 H 0.076 0.924 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.088 0.912 33 H 0.084 0.916 34 H 0.085 0.915 35 H 0.097 0.903 36 H 0.099 0.901 37 H 0.244 0.756 38 H 0.128 0.872 39 H 0.108 0.892 40 H 0.098 0.902 41 H 0.106 0.894 42 H 0.078 0.922 43 H 0.207 0.793 44 H 0.072 0.928 45 H 0.094 0.906 46 H 0.109 0.891 47 H 0.093 0.907 48 H 0.089 0.911 49 H 0.090 0.910 50 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -16.736 -17.989 -1.707 24.630 hybrid contribution 0.730 -1.607 -0.498 1.834 sum -16.007 -19.596 -2.205 25.398 Atomic orbital electron populations 1.20934 0.92757 1.01934 1.01825 1.20691 0.95564 0.94353 1.02773 1.20595 0.94760 0.94892 1.02060 1.21106 0.99441 0.95852 1.02366 1.20336 0.91979 0.95815 1.02876 1.21383 0.90815 0.97924 1.02450 0.88328 1.20655 0.88921 0.79849 0.79783 1.90685 1.73758 1.41798 1.35713 1.45566 1.07711 1.34659 1.47101 1.21952 0.81500 0.98725 0.96827 1.24298 0.99769 0.90905 0.99466 1.68824 1.32331 1.07171 1.07814 1.22508 0.92575 0.95279 1.02097 1.19580 0.86422 0.85667 0.84879 1.90524 1.19629 1.82027 1.52910 1.41963 1.09315 1.09591 1.60965 1.20589 0.99012 0.85547 1.45790 0.88312 1.26503 0.92727 1.05454 0.96642 1.70845 1.17967 1.22388 1.43110 0.83052 0.75273 0.72718 0.76741 1.20935 1.21034 1.21007 1.24377 1.02079 0.93166 0.94294 1.21417 0.94495 0.97676 0.99986 1.20419 0.94737 0.94779 1.01743 0.92419 0.91688 0.91686 0.91236 0.91643 0.91520 0.90274 0.90102 0.75575 0.87230 0.89231 0.90177 0.89416 0.92202 0.79272 0.92761 0.90595 0.89145 0.90675 0.91068 0.90954 0.90798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.77 8.35 36.00 0.30 -0.46 16 2 C -0.13 -1.08 5.84 -100.94 -0.59 -1.67 16 3 C -0.12 -1.08 5.84 -100.89 -0.59 -1.67 16 4 C -0.13 -1.05 9.62 36.00 0.35 -0.70 16 5 C -0.07 -0.68 4.99 -28.13 -0.14 -0.82 16 6 C -0.10 -0.96 2.57 -91.56 -0.24 -1.20 16 7 H 0.10 0.77 8.13 -51.93 -0.42 0.35 16 8 C 0.52 6.18 7.13 -10.98 -0.08 6.10 16 9 O -0.54 -8.25 15.50 5.56 0.09 -8.16 16 10 N -0.70 -7.83 5.30 -53.54 -0.28 -8.11 16 11 C 0.12 1.38 4.59 -67.72 -0.31 1.07 16 12 C -0.01 -0.16 7.45 -7.54 -0.06 -0.22 16 13 N -0.44 -6.89 5.82 -246.10 -1.43 -8.32 16 14 C 0.01 0.13 5.30 -4.98 -0.03 0.10 16 15 C 0.45 10.68 7.85 -10.99 -0.09 10.59 16 16 O -0.57 -15.74 16.01 5.55 0.09 -15.65 16 17 N -0.58 -14.66 5.28 -10.97 -0.06 -14.72 16 18 C -0.38 -10.77 9.68 -14.93 -0.14 -10.91 16 19 H 0.10 2.98 7.16 -52.49 -0.38 2.61 16 20 C -0.01 -0.31 5.50 -17.47 -0.10 -0.40 16 21 N -0.90 -25.44 13.68 55.50 0.76 -24.68 16 22 Si 1.10 24.55 29.92 -169.99 -5.09 19.47 16 23 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 24 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 25 H -0.28 -6.19 7.11 56.52 0.40 -5.78 16 26 C -0.01 -0.13 7.52 -7.55 -0.06 -0.18 16 27 C -0.10 -0.89 4.69 -26.52 -0.12 -1.02 16 28 C -0.08 -0.60 5.69 -28.18 -0.16 -0.76 16 29 H 0.06 0.32 7.93 -51.93 -0.41 -0.09 16 30 H 0.06 0.41 7.70 -51.93 -0.40 0.01 16 31 H 0.06 0.40 7.31 -51.93 -0.38 0.02 16 32 H 0.07 0.47 5.21 -51.93 -0.27 0.20 16 33 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 35 H 0.08 0.84 8.10 -51.93 -0.42 0.42 16 36 H 0.08 0.73 7.92 -51.93 -0.41 0.31 16 37 H 0.41 4.18 8.46 -40.82 -0.35 3.83 16 38 H 0.11 1.30 7.46 -51.93 -0.39 0.91 16 39 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 40 H 0.08 0.77 7.91 -51.93 -0.41 0.36 16 41 H 0.09 1.34 8.08 -51.93 -0.42 0.92 16 42 H 0.06 0.91 7.30 -51.93 -0.38 0.54 16 43 H 0.37 8.71 6.73 -40.82 -0.27 8.44 16 44 H 0.26 7.05 6.77 -40.82 -0.28 6.78 16 45 H 0.08 1.02 7.42 -51.93 -0.39 0.63 16 46 H 0.09 1.50 8.14 -51.93 -0.42 1.08 16 47 H 0.07 0.71 7.90 -51.93 -0.41 0.30 16 48 H 0.07 0.74 8.13 -51.93 -0.42 0.32 16 49 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 50 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 LS Contribution 399.92 15.07 6.03 6.03 Total: -1.00 -34.78 399.92 -10.08 -44.86 By element: Atomic # 1 Polarization: 19.56 SS G_CDS: -8.13 Total: 11.43 kcal Atomic # 6 Polarization: -0.10 SS G_CDS: -2.05 Total: -2.15 kcal Atomic # 7 Polarization: -54.81 SS G_CDS: -1.01 Total: -55.83 kcal Atomic # 8 Polarization: -23.99 SS G_CDS: 0.18 Total: -23.81 kcal Atomic # 14 Polarization: 24.55 SS G_CDS: -5.09 Total: 19.47 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -34.78 -10.08 -44.86 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732102477.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.648 kcal (2) G-P(sol) polarization free energy of solvation -34.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.859 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds