Wall clock time and date at job start Tue Mar 31 2020 18:38:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.29439 * 117.96565 * 2 1 4 4 C 1.50698 * 117.96239 * 359.53183 * 3 2 1 5 5 C 1.50165 * 124.15072 * 179.73680 * 3 2 1 6 6 C 1.53022 * 110.09293 * 16.71990 * 5 3 2 7 7 H 1.08995 * 109.64734 * 70.67901 * 6 5 3 8 8 C 1.50707 * 109.64178 * 191.09544 * 6 5 3 9 9 O 1.21274 * 119.99835 * 119.57744 * 8 6 5 10 10 N 1.34780 * 119.99659 * 299.57903 * 8 6 5 11 11 C 1.46507 * 119.99553 * 180.02562 * 10 8 6 12 12 C 1.53511 * 114.16549 * 154.99622 * 11 10 8 13 13 N 1.47486 * 87.93043 * 87.62515 * 12 11 10 14 14 C 1.46898 * 111.00342 * 138.70348 * 13 12 11 15 15 C 1.50694 * 109.47202 * 170.00052 * 14 13 12 16 16 O 1.21287 * 120.00200 * 359.97438 * 15 14 13 17 17 N 1.34776 * 120.00051 * 179.97438 * 15 14 13 18 18 C 1.37097 * 120.00114 * 179.97438 * 17 15 14 19 19 H 1.08000 * 120.00040 * 0.02562 * 18 17 15 20 20 C 1.38956 * 119.99963 * 179.97438 * 18 17 15 21 21 N 1.31410 * 120.00149 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 119.99932 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47068 * 0.02562 * 22 20 18 24 24 H 1.48501 * 109.46995 * 120.00304 * 22 20 18 25 25 H 1.48494 * 109.47447 * 240.00037 * 22 20 18 26 26 C 1.47477 * 87.83633 * 27.00442 * 13 12 11 27 27 C 1.53387 * 108.61369 * 310.88225 * 6 5 3 28 28 C 1.50073 * 117.96233 * 179.97438 * 2 1 3 29 29 H 1.09000 * 109.47536 * 175.20685 * 1 2 3 30 30 H 1.09000 * 109.47043 * 295.20786 * 1 2 3 31 31 H 1.09003 * 109.47046 * 55.20674 * 1 2 3 32 32 H 1.09000 * 109.46841 * 5.26513 * 4 3 2 33 33 H 1.09000 * 109.47543 * 125.26130 * 4 3 2 34 34 H 1.09005 * 109.47131 * 245.26604 * 4 3 2 35 35 H 1.08998 * 109.21362 * 256.63429 * 5 3 2 36 36 H 1.09002 * 109.55916 * 137.01879 * 5 3 2 37 37 H 0.97001 * 120.00316 * 359.97438 * 10 8 6 38 38 H 1.08996 * 113.38406 * 21.91716 * 11 10 8 39 39 H 1.08995 * 113.48474 * 332.85738 * 12 11 10 40 40 H 1.09006 * 113.47227 * 202.38359 * 12 11 10 41 41 H 1.08998 * 109.47043 * 49.99598 * 14 13 12 42 42 H 1.09003 * 109.46425 * 289.99923 * 14 13 12 43 43 H 0.97004 * 119.99979 * 359.97438 * 17 15 14 44 44 H 0.97000 * 119.99725 * 0.02562 * 21 20 18 45 45 H 1.09003 * 113.47343 * 87.75784 * 26 13 12 46 46 H 1.09004 * 113.47822 * 218.22237 * 26 13 12 47 47 H 1.09006 * 109.64650 * 187.01689 * 27 6 5 48 48 H 1.08997 * 109.64367 * 307.64612 * 27 6 5 49 49 H 1.08999 * 109.36004 * 76.94767 * 28 2 1 50 50 H 1.09002 * 109.35622 * 317.36201 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1139 1.1432 0.0000 4 6 1.2697 2.3915 -0.0109 5 6 3.6068 1.3050 0.0057 6 6 4.2794 -0.0075 -0.4022 7 1 4.1093 -0.1923 -1.4628 8 6 5.7600 0.0772 -0.1340 9 8 6.2823 -0.7011 0.6356 10 7 6.5035 1.0180 -0.7493 11 6 7.9429 1.1000 -0.4890 12 6 8.7512 1.7436 -1.6243 13 7 8.4848 3.0529 -0.9998 14 6 9.6812 3.9047 -1.0317 15 6 9.3121 5.3050 -0.6150 16 8 8.1651 5.5679 -0.3209 17 7 10.2564 6.2655 -0.5692 18 6 9.9205 7.5397 -0.1906 19 1 8.8992 7.7736 0.0712 20 6 10.8943 8.5298 -0.1429 21 7 12.1371 8.2449 -0.4610 22 14 10.4368 10.2656 0.3736 23 1 8.9847 10.3247 0.6790 24 1 11.2122 10.6429 1.5826 25 1 10.7499 11.2091 -0.7295 26 6 8.3701 2.3507 0.2920 27 6 3.6702 -1.1472 0.4241 28 6 2.2106 -1.3255 0.0006 29 1 -0.3634 -1.0240 -0.0859 30 1 -0.3633 0.4377 0.9298 31 1 -0.3633 0.5864 -0.8440 32 1 0.2179 2.1195 0.0769 33 1 1.5515 3.0281 0.8278 34 1 1.4291 2.9298 -0.9452 35 1 3.9338 1.5824 1.0078 36 1 3.8915 2.0899 -0.6951 37 1 6.0858 1.6403 -1.3651 38 1 8.3677 0.1705 -0.1100 39 1 8.2901 1.6285 -2.6052 40 1 9.8054 1.4662 -1.6182 41 1 10.0882 3.9217 -2.0427 42 1 10.4289 3.5066 -0.3456 43 1 11.1738 6.0553 -0.8040 44 1 12.3746 7.3436 -0.7295 45 1 9.3225 2.2352 0.8094 46 1 7.5858 2.7500 0.9352 47 1 4.2209 -2.0695 0.2383 48 1 3.7162 -0.8966 1.4838 49 1 2.1749 -1.7540 -1.0010 50 1 1.7118 -1.9990 0.6975 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001732102477.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:38:27 Heat of formation + Delta-G solvation = -58.678511 kcal Electronic energy + Delta-G solvation = -28703.721415 eV Core-core repulsion = 24730.556284 eV Total energy + Delta-G solvation = -3973.165131 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.91416 -40.90078 -39.84783 -39.09711 -36.35888 -35.08708 -34.51818 -33.18438 -32.69069 -31.10892 -28.44216 -27.49027 -27.08552 -26.94962 -25.29629 -24.11080 -23.25505 -21.62826 -21.11459 -20.78505 -19.96973 -18.54213 -18.12974 -17.79241 -17.33608 -17.09582 -16.59546 -16.25454 -15.95491 -15.88058 -15.59742 -15.46466 -15.33993 -15.12052 -14.81341 -14.72195 -14.49209 -13.95259 -13.74995 -13.69608 -13.35832 -13.32436 -13.08253 -12.92971 -12.82753 -12.74107 -12.62445 -12.42643 -12.37539 -11.98225 -11.94750 -11.92926 -11.85895 -11.67681 -11.52550 -11.26585 -10.76961 -10.45952 -10.13310 -10.10621 -9.80725 -9.39736 -8.93925 -6.07522 1.28045 1.51544 1.52149 1.52356 1.79984 2.01224 2.07274 2.38124 2.73834 3.14190 3.23552 3.40630 3.51660 3.64143 3.71004 3.83476 4.05340 4.06920 4.12320 4.14974 4.30000 4.30625 4.38439 4.39571 4.43047 4.53493 4.53946 4.57416 4.61836 4.72134 4.76390 4.80508 4.84184 4.90835 4.92043 5.04128 5.06864 5.13406 5.21031 5.24727 5.26692 5.31857 5.47111 5.58717 5.77438 5.87096 5.96466 6.17388 6.49737 6.57458 6.75214 7.16908 7.44093 7.94288 8.54179 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.015165 B = 0.002184 C = 0.001950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1845.942616 B =12818.869469 C =14354.377093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.130 4.130 3 C -0.143 4.143 4 C -0.130 4.130 5 C -0.069 4.069 6 C -0.097 4.097 7 H 0.120 0.880 8 C 0.521 3.479 9 O -0.578 6.578 10 N -0.695 5.695 11 C 0.125 3.875 12 C 0.001 3.999 13 N -0.468 5.468 14 C 0.021 3.979 15 C 0.445 3.555 16 O -0.614 6.614 17 N -0.590 5.590 18 C -0.408 4.408 19 H 0.069 0.931 20 C -0.044 4.044 21 N -0.918 5.918 22 Si 1.137 2.863 23 H -0.281 1.281 24 H -0.272 1.272 25 H -0.270 1.270 26 C -0.015 4.015 27 C -0.096 4.096 28 C -0.077 4.077 29 H 0.069 0.931 30 H 0.066 0.934 31 H 0.071 0.929 32 H 0.082 0.918 33 H 0.055 0.945 34 H 0.066 0.934 35 H 0.057 0.943 36 H 0.081 0.919 37 H 0.414 0.586 38 H 0.115 0.885 39 H 0.106 0.894 40 H 0.107 0.893 41 H 0.114 0.886 42 H 0.085 0.915 43 H 0.384 0.616 44 H 0.260 0.740 45 H 0.088 0.912 46 H 0.058 0.942 47 H 0.071 0.929 48 H 0.051 0.949 49 H 0.088 0.912 50 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.671 -20.866 -3.760 26.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.130 4.130 3 C -0.143 4.143 4 C -0.187 4.187 5 C -0.106 4.106 6 C -0.118 4.118 7 H 0.138 0.862 8 C 0.309 3.691 9 O -0.458 6.458 10 N -0.346 5.346 11 C 0.018 3.982 12 C -0.127 4.127 13 N -0.191 5.191 14 C -0.111 4.111 15 C 0.233 3.767 16 O -0.498 6.498 17 N -0.230 5.230 18 C -0.537 4.537 19 H 0.087 0.913 20 C -0.242 4.242 21 N -0.557 5.557 22 Si 0.957 3.043 23 H -0.207 1.207 24 H -0.197 1.197 25 H -0.195 1.195 26 C -0.146 4.146 27 C -0.134 4.134 28 C -0.114 4.114 29 H 0.088 0.912 30 H 0.085 0.915 31 H 0.090 0.910 32 H 0.101 0.899 33 H 0.074 0.926 34 H 0.085 0.915 35 H 0.075 0.925 36 H 0.100 0.900 37 H 0.251 0.749 38 H 0.133 0.867 39 H 0.124 0.876 40 H 0.125 0.875 41 H 0.132 0.868 42 H 0.103 0.897 43 H 0.218 0.782 44 H 0.071 0.929 45 H 0.106 0.894 46 H 0.076 0.924 47 H 0.090 0.910 48 H 0.070 0.930 49 H 0.106 0.894 50 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -16.994 -19.240 -3.027 25.849 hybrid contribution 0.774 -1.304 -0.078 1.519 sum -16.220 -20.545 -3.106 26.360 Atomic orbital electron populations 1.20963 0.91405 1.02914 1.02192 1.20948 0.96653 0.94235 1.01150 1.20625 0.94254 0.95639 1.03753 1.21108 1.00094 0.95473 1.01997 1.20261 0.92839 0.95867 1.01635 1.21382 0.88825 0.97911 1.03661 0.86202 1.21107 0.89888 0.79194 0.78931 1.90665 1.74606 1.43251 1.37257 1.45589 1.07693 1.34456 1.46823 1.21882 0.81927 0.97724 0.96641 1.24342 1.01323 0.87574 0.99509 1.68781 1.32164 1.09261 1.08908 1.22412 0.93761 0.91064 1.03860 1.20842 0.85400 0.87828 0.82644 1.90494 1.21611 1.83398 1.54343 1.42023 1.10186 1.09217 1.61579 1.20527 0.98079 0.87574 1.47523 0.91253 1.27802 0.92128 1.08514 0.95717 1.70913 1.18339 1.22601 1.43874 0.82564 0.75321 0.69117 0.77285 1.20679 1.19679 1.19525 1.24437 1.01836 0.94315 0.93972 1.21379 0.95850 0.97309 0.98837 1.20446 0.93287 0.94794 1.02865 0.91224 0.91485 0.91050 0.89941 0.92602 0.91478 0.92450 0.90043 0.74945 0.86711 0.87617 0.87472 0.86789 0.89706 0.78155 0.92918 0.89447 0.92382 0.91009 0.93017 0.89385 0.89689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.29 8.35 71.23 0.60 -0.69 16 2 C -0.13 -1.91 5.84 -15.09 -0.09 -1.99 16 3 C -0.14 -2.43 5.84 -15.06 -0.09 -2.52 16 4 C -0.13 -2.03 9.62 71.24 0.69 -1.34 16 5 C -0.07 -1.30 4.99 29.69 0.15 -1.15 16 6 C -0.10 -1.73 2.57 -11.40 -0.03 -1.76 16 7 H 0.12 1.66 8.13 -2.39 -0.02 1.64 16 8 C 0.52 12.24 7.13 87.66 0.63 12.87 16 9 O -0.58 -17.68 15.50 -3.01 -0.05 -17.72 16 10 N -0.70 -15.09 5.30 -441.69 -2.34 -17.42 16 11 C 0.13 2.80 4.59 45.44 0.21 3.00 16 12 C 0.00 0.03 7.45 83.58 0.62 0.65 16 13 N -0.47 -14.02 5.82 -932.52 -5.43 -19.45 16 14 C 0.02 0.67 5.30 85.56 0.45 1.13 16 15 C 0.45 21.27 7.85 87.66 0.69 21.96 16 16 O -0.61 -34.90 16.01 -3.05 -0.05 -34.95 16 17 N -0.59 -30.15 5.28 -306.99 -1.62 -31.78 16 18 C -0.41 -23.60 9.68 84.04 0.81 -22.79 16 19 H 0.07 4.36 7.16 -2.91 -0.02 4.34 16 20 C -0.04 -2.39 5.50 84.93 0.47 -1.92 16 21 N -0.92 -51.34 13.68 21.66 0.30 -51.05 16 22 Si 1.14 49.21 29.92 68.60 2.05 51.27 16 23 H -0.28 -11.92 7.11 99.48 0.71 -11.22 16 24 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 25 H -0.27 -11.05 7.11 99.48 0.71 -10.35 16 26 C -0.02 -0.43 7.52 83.58 0.63 0.20 16 27 C -0.10 -1.70 4.69 30.73 0.14 -1.56 16 28 C -0.08 -1.02 5.69 29.66 0.17 -0.85 16 29 H 0.07 0.60 7.93 -2.39 -0.02 0.58 16 30 H 0.07 0.72 7.70 -2.39 -0.02 0.71 16 31 H 0.07 0.71 7.31 -2.39 -0.02 0.69 16 32 H 0.08 1.03 5.21 -2.39 -0.01 1.02 16 33 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 34 H 0.07 1.01 8.14 -2.38 -0.02 0.99 16 35 H 0.06 1.31 8.10 -2.39 -0.02 1.29 16 36 H 0.08 1.49 7.92 -2.39 -0.02 1.47 16 37 H 0.41 8.13 8.46 -92.71 -0.78 7.35 16 38 H 0.12 2.53 7.46 -2.39 -0.02 2.51 16 39 H 0.11 1.79 8.14 -2.39 -0.02 1.77 16 40 H 0.11 1.60 7.91 -2.38 -0.02 1.58 16 41 H 0.11 3.14 8.08 -2.39 -0.02 3.12 16 42 H 0.09 2.36 7.30 -2.39 -0.02 2.34 16 43 H 0.38 17.86 6.73 -92.71 -0.62 17.23 16 44 H 0.26 14.01 6.77 -92.71 -0.63 13.38 16 45 H 0.09 2.25 7.42 -2.39 -0.02 2.23 16 46 H 0.06 2.01 8.14 -2.38 -0.02 1.99 16 47 H 0.07 1.33 7.90 -2.38 -0.02 1.31 16 48 H 0.05 1.11 8.13 -2.39 -0.02 1.09 16 49 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 50 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 Total: -1.00 -77.08 399.92 -1.40 -78.48 By element: Atomic # 1 Polarization: 39.70 SS G_CDS: -0.31 Total: 39.39 kcal Atomic # 6 Polarization: -2.81 SS G_CDS: 6.04 Total: 3.23 kcal Atomic # 7 Polarization: -110.60 SS G_CDS: -9.09 Total: -119.69 kcal Atomic # 8 Polarization: -52.58 SS G_CDS: -0.10 Total: -52.67 kcal Atomic # 14 Polarization: 49.21 SS G_CDS: 2.05 Total: 51.27 kcal Total: -77.08 -1.40 -78.48 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732102477.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.798 kcal (2) G-P(sol) polarization free energy of solvation -77.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.476 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds