Wall clock time and date at job start Tue Mar 31 2020 18:24:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.51584 * 135.78286 * 2 1 4 4 C 1.53846 * 86.75478 * 154.86758 * 3 2 1 5 5 C 1.52999 * 113.65411 * 139.26727 * 4 3 2 6 6 C 1.50694 * 113.66168 * 270.31526 * 4 3 2 7 7 O 1.21281 * 120.00182 * 121.12608 * 6 4 3 8 8 N 1.34781 * 119.99781 * 301.12775 * 6 4 3 9 9 C 1.46495 * 119.99993 * 5.24747 * 8 6 4 10 10 C 1.46498 * 119.99819 * 185.24935 * 8 6 4 11 11 H 1.08994 * 110.28915 * 359.30015 * 10 8 6 12 12 C 1.54260 * 110.32342 * 237.17052 * 10 8 6 13 13 C 1.54385 * 105.06060 * 241.10619 * 12 10 8 14 14 N 1.48562 * 104.59494 * 23.85134 * 13 12 10 15 15 C 1.46899 * 111.00258 * 200.96174 * 14 13 12 16 16 C 1.50700 * 109.47189 * 290.12960 * 15 14 13 17 17 O 1.21291 * 119.99727 * 359.97438 * 16 15 14 18 18 N 1.34769 * 120.00130 * 180.02562 * 16 15 14 19 19 C 1.37106 * 119.99916 * 179.97438 * 18 16 15 20 20 H 1.07999 * 119.99805 * 359.97438 * 19 18 16 21 21 C 1.38946 * 119.99758 * 179.97438 * 19 18 16 22 22 N 1.31410 * 119.99872 * 180.02562 * 21 19 18 23 23 Si 1.86806 * 120.00381 * 359.97438 * 21 19 18 24 24 H 1.48498 * 109.46784 * 89.99905 * 23 21 19 25 25 H 1.48497 * 109.47140 * 210.00134 * 23 21 19 26 26 H 1.48504 * 109.46763 * 330.00225 * 23 21 19 27 27 C 1.48829 * 104.23647 * 320.49529 * 14 13 12 28 28 C 1.51580 * 135.78186 * 180.02562 * 2 1 3 29 29 H 1.08001 * 119.99525 * 359.97438 * 1 2 3 30 30 H 1.07994 * 120.00052 * 180.02562 * 1 2 3 31 31 H 1.08999 * 113.66413 * 40.40638 * 3 2 1 32 32 H 1.08996 * 113.66711 * 269.33544 * 3 2 1 33 33 H 1.09004 * 109.46989 * 53.27650 * 5 4 3 34 34 H 1.08999 * 109.46782 * 173.26921 * 5 4 3 35 35 H 1.08995 * 109.47766 * 293.27605 * 5 4 3 36 36 H 1.09000 * 109.47245 * 88.30689 * 9 8 6 37 37 H 1.09001 * 109.47136 * 208.30918 * 9 8 6 38 38 H 1.09001 * 109.47183 * 328.30409 * 9 8 6 39 39 H 1.08996 * 110.32376 * 359.97438 * 12 10 8 40 40 H 1.09000 * 110.32650 * 122.21379 * 12 10 8 41 41 H 1.09000 * 110.41443 * 142.63117 * 13 12 10 42 42 H 1.09004 * 110.41138 * 264.95686 * 13 12 10 43 43 H 1.09007 * 109.47008 * 50.12582 * 15 14 13 44 44 H 1.08996 * 109.47467 * 170.12211 * 15 14 13 45 45 H 0.97000 * 120.00235 * 359.97438 * 18 16 15 46 46 H 0.97009 * 120.00310 * 180.02562 * 22 21 19 47 47 H 1.09002 * 110.44646 * 280.77269 * 27 14 13 48 48 H 1.08994 * 110.49416 * 158.24976 * 27 14 13 49 49 H 1.09001 * 113.66812 * 90.66415 * 28 2 1 50 50 H 1.09000 * 113.66685 * 319.59436 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.3964 1.0571 0.0000 4 6 3.3038 -0.0002 0.6524 5 6 4.7345 -0.0001 0.1103 6 6 3.2459 -0.0008 2.1582 7 8 2.9074 -1.0028 2.7517 8 7 3.5705 1.1123 2.8454 9 6 3.8678 2.3550 2.1288 10 6 3.6259 1.0795 4.3090 11 1 3.3662 0.0861 4.6748 12 6 2.6729 2.1360 4.9050 13 6 3.5835 3.0901 5.7076 14 7 4.9246 2.9381 5.0870 15 6 5.9833 3.3733 6.0077 16 6 5.9226 4.8702 6.1714 17 8 5.0805 5.5113 5.5789 18 7 6.8045 5.4965 6.9753 19 6 6.7495 6.8583 7.1238 20 1 5.9998 7.4292 6.5962 21 6 7.6585 7.5040 7.9530 22 7 7.6055 8.8092 8.0958 23 14 8.9549 6.5164 8.8661 24 1 10.1756 6.4074 8.0276 25 1 9.2898 7.1991 10.1416 26 1 8.4297 5.1577 9.1548 27 6 5.0327 1.4814 4.8014 28 6 2.3964 -1.0571 -0.0005 29 1 -0.5399 0.9354 0.0004 30 1 -0.5400 -0.9353 0.0004 31 1 2.1798 1.9071 0.6471 32 1 2.7181 1.3539 -0.9982 33 1 5.1493 1.0056 0.1797 34 1 5.3453 -0.6863 0.6969 35 1 4.7283 -0.3193 -0.9319 36 1 2.9445 2.9115 1.9680 37 1 4.5578 2.9584 2.7187 38 1 4.3224 2.1196 1.1665 39 1 2.1644 2.6793 4.1087 40 1 1.9467 1.6615 5.5650 41 1 3.2348 4.1184 5.6121 42 1 3.6124 2.7953 6.7566 43 1 5.8406 2.8957 6.9772 44 1 6.9553 3.0911 5.6033 45 1 7.4781 4.9838 7.4489 46 1 8.2403 9.2601 8.6744 47 1 5.2890 0.9336 5.7082 48 1 5.7742 1.2990 4.0237 49 1 2.7180 -1.3535 -0.9989 50 1 2.1798 -1.9074 0.6463 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001732174936.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:24:37 Heat of formation + Delta-G solvation = -20.980306 kcal Electronic energy + Delta-G solvation = -29794.541398 eV Core-core repulsion = 25823.010984 eV Total energy + Delta-G solvation = -3971.530414 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -42.07470 -40.69855 -39.58195 -38.38316 -36.31032 -35.81343 -33.75235 -33.08228 -32.16564 -29.76478 -28.65521 -28.46268 -27.64504 -26.72245 -25.89580 -24.23730 -22.42871 -21.37059 -21.14128 -20.15227 -19.81407 -19.08574 -17.96326 -17.70909 -17.27545 -16.91967 -16.53053 -16.49397 -16.20042 -15.85404 -15.53734 -15.26023 -15.16509 -15.04275 -14.58445 -14.45003 -14.33659 -14.05625 -13.87556 -13.75882 -13.41257 -13.20829 -13.11151 -12.98948 -12.93893 -12.84528 -12.77029 -12.66226 -12.40367 -12.16245 -11.97454 -11.84319 -11.77123 -11.68303 -11.46620 -11.09727 -10.76816 -10.40574 -10.22020 -10.01151 -9.69064 -9.37593 -8.39630 -5.99904 1.30594 1.30994 1.36043 1.44545 1.54959 1.94525 1.98945 2.23730 2.64109 3.15884 3.25374 3.31594 3.42992 3.54159 3.58222 3.66241 3.75122 4.08309 4.14686 4.15859 4.28449 4.31768 4.39053 4.40438 4.45761 4.49033 4.60903 4.65645 4.73482 4.75362 4.80869 4.82251 4.86003 4.88985 4.95299 5.02861 5.06681 5.10534 5.15242 5.19786 5.35208 5.53343 5.53950 5.56052 5.83882 5.86746 5.98707 6.00743 6.40424 6.61668 6.90917 7.11531 7.42516 7.99822 8.77955 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.025284 B = 0.002291 C = 0.002276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1107.161124 B =12219.638007 C =12300.454645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.172 4.172 3 C -0.092 4.092 4 C -0.103 4.103 5 C -0.129 4.129 6 C 0.536 3.464 7 O -0.582 6.582 8 N -0.594 5.594 9 C 0.068 3.932 10 C 0.139 3.861 11 H 0.099 0.901 12 C -0.122 4.122 13 C 0.040 3.960 14 N -0.498 5.498 15 C 0.042 3.958 16 C 0.455 3.545 17 O -0.603 6.603 18 N -0.595 5.595 19 C -0.323 4.323 20 H 0.056 0.944 21 C -0.017 4.017 22 N -0.936 5.936 23 Si 0.963 3.037 24 H -0.257 1.257 25 H -0.277 1.277 26 H -0.232 1.232 27 C 0.028 3.972 28 C -0.085 4.085 29 H 0.112 0.888 30 H 0.108 0.892 31 H 0.079 0.921 32 H 0.127 0.873 33 H 0.078 0.922 34 H 0.052 0.948 35 H 0.091 0.909 36 H 0.056 0.944 37 H 0.083 0.917 38 H 0.095 0.905 39 H 0.071 0.929 40 H 0.085 0.915 41 H 0.063 0.937 42 H 0.047 0.953 43 H 0.080 0.920 44 H 0.121 0.879 45 H 0.388 0.612 46 H 0.278 0.722 47 H 0.072 0.928 48 H 0.094 0.906 49 H 0.123 0.877 50 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.270 -22.562 -14.579 27.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.172 4.172 3 C -0.129 4.129 4 C -0.106 4.106 5 C -0.186 4.186 6 C 0.326 3.674 7 O -0.463 6.463 8 N -0.324 5.324 9 C -0.074 4.074 10 C 0.035 3.965 11 H 0.117 0.883 12 C -0.161 4.161 13 C -0.089 4.089 14 N -0.223 5.223 15 C -0.090 4.090 16 C 0.242 3.758 17 O -0.487 6.487 18 N -0.237 5.237 19 C -0.452 4.452 20 H 0.074 0.926 21 C -0.215 4.215 22 N -0.577 5.577 23 Si 0.784 3.216 24 H -0.181 1.181 25 H -0.203 1.203 26 H -0.156 1.156 27 C -0.100 4.100 28 C -0.122 4.122 29 H 0.130 0.870 30 H 0.126 0.874 31 H 0.098 0.902 32 H 0.145 0.855 33 H 0.097 0.903 34 H 0.071 0.929 35 H 0.110 0.890 36 H 0.074 0.926 37 H 0.101 0.899 38 H 0.113 0.887 39 H 0.090 0.910 40 H 0.104 0.896 41 H 0.082 0.918 42 H 0.065 0.935 43 H 0.098 0.902 44 H 0.139 0.861 45 H 0.224 0.776 46 H 0.088 0.912 47 H 0.090 0.910 48 H 0.112 0.888 49 H 0.141 0.859 50 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -5.860 -22.113 -15.052 27.384 hybrid contribution 0.450 -0.018 1.749 1.806 sum -5.410 -22.131 -13.303 26.383 Atomic orbital electron populations 1.23046 0.93693 1.02696 1.01809 1.23109 0.94475 0.98836 1.00747 1.22636 0.92238 0.95518 1.02521 1.21705 0.98416 1.00616 0.89864 1.21775 0.91400 1.03259 1.02193 1.20515 0.74957 0.82047 0.89918 1.90635 1.49270 1.34734 1.71627 1.47828 1.67640 1.10919 1.06039 1.22229 1.01686 0.85249 0.98252 1.21753 0.94840 0.99950 0.79958 0.88262 1.22615 0.97618 0.96046 0.99853 1.23043 0.89435 1.00076 0.96299 1.65177 1.01379 1.15762 1.39942 1.22033 0.98533 0.90880 0.97523 1.20788 0.82745 0.90780 0.81440 1.90533 1.39342 1.68757 1.50032 1.42050 1.31545 1.06656 1.43440 1.18976 1.16557 0.82375 1.27337 0.92567 1.26089 1.00459 0.96819 0.98127 1.69805 1.38539 1.09910 1.39413 0.85385 0.78460 0.79511 0.78287 1.18148 1.20255 1.15569 1.23577 0.97220 0.87640 1.01559 1.22332 0.92761 0.95623 1.01445 0.86989 0.87392 0.90236 0.85490 0.90337 0.92887 0.89022 0.92569 0.89856 0.88694 0.90986 0.89597 0.91803 0.93462 0.90239 0.86081 0.77630 0.91247 0.91016 0.88759 0.85916 0.91860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.87 14.71 67.78 1.00 -1.87 16 2 C -0.17 -2.92 6.84 -15.98 -0.11 -3.03 16 3 C -0.09 -1.27 6.12 30.41 0.19 -1.08 16 4 C -0.10 -1.67 0.71 -52.42 -0.04 -1.71 16 5 C -0.13 -1.48 8.98 71.98 0.65 -0.84 16 6 C 0.54 12.46 6.35 87.65 0.56 13.02 16 7 O -0.58 -17.87 15.42 -3.03 -0.05 -17.92 16 8 N -0.59 -12.67 2.74 -817.61 -2.24 -14.91 16 9 C 0.07 1.28 7.94 127.77 1.01 2.29 16 10 C 0.14 3.11 3.45 45.89 0.16 3.27 16 11 H 0.10 2.39 6.97 -2.39 -0.02 2.37 16 12 C -0.12 -2.88 6.47 31.49 0.20 -2.67 16 13 C 0.04 1.14 5.80 86.45 0.50 1.64 16 14 N -0.50 -13.85 3.89 -885.27 -3.45 -17.29 16 15 C 0.04 1.22 5.30 85.56 0.45 1.67 16 16 C 0.45 19.76 7.58 87.66 0.66 20.42 16 17 O -0.60 -32.02 14.42 -3.06 -0.04 -32.06 16 18 N -0.59 -27.37 5.09 -306.99 -1.56 -28.93 16 19 C -0.32 -18.62 10.16 84.04 0.85 -17.77 16 20 H 0.06 3.86 7.39 -2.91 -0.02 3.84 16 21 C -0.02 -0.91 5.50 84.93 0.47 -0.44 16 22 N -0.94 -56.07 13.96 21.66 0.30 -55.77 16 23 Si 0.96 38.37 27.74 68.60 1.90 40.27 16 24 H -0.26 -9.69 7.11 99.48 0.71 -8.99 16 25 H -0.28 -11.05 7.11 99.48 0.71 -10.35 16 26 H -0.23 -7.77 6.52 99.48 0.65 -7.12 16 27 C 0.03 0.59 5.50 86.40 0.48 1.07 16 28 C -0.08 -1.38 7.09 30.41 0.22 -1.16 16 29 H 0.11 1.61 8.06 -2.91 -0.02 1.58 16 30 H 0.11 1.62 8.06 -2.91 -0.02 1.60 16 31 H 0.08 1.20 5.47 -2.39 -0.01 1.19 16 32 H 0.13 1.13 8.10 -2.39 -0.02 1.11 16 33 H 0.08 0.77 6.11 -2.38 -0.01 0.75 16 34 H 0.05 0.72 8.09 -2.39 -0.02 0.70 16 35 H 0.09 0.67 7.81 -2.39 -0.02 0.65 16 36 H 0.06 1.05 6.72 -2.39 -0.02 1.04 16 37 H 0.08 1.94 6.28 -2.39 -0.01 1.93 16 38 H 0.09 1.33 4.14 -2.39 -0.01 1.32 16 39 H 0.07 1.78 7.21 -2.39 -0.02 1.76 16 40 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 41 H 0.06 2.34 6.91 -2.39 -0.02 2.33 16 42 H 0.05 1.27 7.83 -2.39 -0.02 1.26 16 43 H 0.08 1.94 7.88 -2.38 -0.02 1.92 16 44 H 0.12 2.86 8.13 -2.39 -0.02 2.84 16 45 H 0.39 14.80 5.76 -92.71 -0.53 14.26 16 46 H 0.28 15.25 8.31 -92.70 -0.77 14.48 16 47 H 0.07 1.29 8.00 -2.39 -0.02 1.27 16 48 H 0.09 1.87 8.05 -2.39 -0.02 1.85 16 49 H 0.12 1.34 7.87 -2.39 -0.02 1.32 16 50 H 0.06 1.34 7.38 -2.39 -0.02 1.32 16 Total: -1.00 -78.26 387.19 2.47 -75.79 By element: Atomic # 1 Polarization: 37.65 SS G_CDS: 0.36 Total: 38.02 kcal Atomic # 6 Polarization: 5.56 SS G_CDS: 7.25 Total: 12.81 kcal Atomic # 7 Polarization: -109.96 SS G_CDS: -6.95 Total: -116.90 kcal Atomic # 8 Polarization: -49.89 SS G_CDS: -0.09 Total: -49.98 kcal Atomic # 14 Polarization: 38.37 SS G_CDS: 1.90 Total: 40.27 kcal Total: -78.26 2.47 -75.79 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732174936.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.807 kcal (2) G-P(sol) polarization free energy of solvation -78.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.787 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds