Wall clock time and date at job start Tue Mar 31 2020 19:42:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50701 * 110.43246 * 2 1 4 4 O 1.21284 * 120.00112 * 237.45662 * 3 2 1 5 5 N 1.34779 * 120.00011 * 57.46224 * 3 2 1 6 6 C 1.46498 * 120.00256 * 179.97438 * 5 3 2 7 7 C 1.52995 * 109.47121 * 179.97438 * 6 5 3 8 8 H 1.09004 * 109.43299 * 59.91724 * 7 6 5 9 9 C 1.53148 * 109.43690 * 179.78064 * 7 6 5 10 10 C 1.54243 * 108.84242 * 66.08429 * 9 7 6 11 11 H 1.09003 * 112.33074 * 187.68952 * 10 9 7 12 12 C 1.54608 * 107.85890 * 312.47668 * 10 9 7 13 13 C 1.53802 * 104.85037 * 88.47206 * 12 10 9 14 14 C 1.54616 * 104.84621 * 359.97438 * 13 12 10 15 15 H 1.09003 * 112.68931 * 146.96417 * 14 13 12 16 16 C 1.53144 * 109.43915 * 300.00357 * 7 6 5 17 17 N 1.48289 * 106.99050 * 64.13630 * 10 9 7 18 18 C 1.36939 * 128.21324 * 107.53274 * 17 10 9 19 19 H 1.08002 * 120.00153 * 215.55911 * 18 17 10 20 20 C 1.38814 * 119.99764 * 35.54611 * 18 17 10 21 21 N 1.31625 * 119.99335 * 176.90228 * 20 18 17 22 22 Si 1.86788 * 120.00334 * 356.90440 * 20 18 17 23 23 H 1.48502 * 109.47214 * 276.04090 * 22 20 18 24 24 H 1.48504 * 109.47361 * 36.03798 * 22 20 18 25 25 H 1.48498 * 109.47329 * 156.03931 * 22 20 18 26 26 C 1.54633 * 110.48936 * 237.46260 * 2 1 3 27 27 C 1.54476 * 101.76534 * 216.39009 * 26 2 1 28 28 N 1.46759 * 105.47624 * 25.41188 * 27 26 2 29 29 C 1.34425 * 111.30115 * 342.98742 * 28 27 26 30 30 O 1.21279 * 124.94497 * 180.43907 * 29 28 27 31 31 H 1.09004 * 109.47172 * 60.70218 * 1 2 3 32 32 H 1.09009 * 109.46967 * 180.69782 * 1 2 3 33 33 H 1.08995 * 109.47148 * 300.69773 * 1 2 3 34 34 H 0.96999 * 119.99706 * 359.97438 * 5 3 2 35 35 H 1.08999 * 109.46874 * 59.99779 * 6 5 3 36 36 H 1.08999 * 109.47281 * 299.99696 * 6 5 3 37 37 H 1.09001 * 109.57281 * 185.99689 * 9 7 6 38 38 H 1.09007 * 109.56795 * 306.24001 * 9 7 6 39 39 H 1.09000 * 110.38614 * 207.17411 * 12 10 9 40 40 H 1.09001 * 110.38339 * 329.42631 * 12 10 9 41 41 H 1.09000 * 110.43116 * 241.10392 * 13 12 10 42 42 H 1.08994 * 110.23875 * 118.79543 * 13 12 10 43 43 H 1.08993 * 109.57324 * 174.00468 * 16 7 6 44 44 H 1.09000 * 109.56647 * 53.64238 * 16 7 6 45 45 H 0.96998 * 119.99359 * 180.02562 * 21 20 18 46 46 H 1.08997 * 110.96595 * 334.51016 * 26 2 1 47 47 H 1.09002 * 110.97117 * 98.26626 * 26 2 1 48 48 H 1.09001 * 110.24483 * 144.41530 * 27 26 2 49 49 H 1.08999 * 110.24613 * 266.41185 * 27 26 2 50 50 H 0.97003 * 124.35442 * 162.97659 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0561 1.4122 0.0000 4 8 2.7973 1.7832 -0.8854 5 7 1.7030 2.2629 0.9840 6 6 2.2149 3.6355 0.9844 7 6 1.6653 4.3844 2.2000 8 1 1.9809 3.8771 3.1117 9 6 2.2052 5.8176 2.2026 10 6 1.6288 6.5692 0.9852 11 1 2.0791 7.5533 0.8549 12 6 1.8027 5.6646 -0.2564 13 6 0.5320 4.7990 -0.2946 14 6 -0.2964 5.2573 0.9279 15 1 -1.3708 5.2029 0.7520 16 6 0.1354 4.4096 2.1343 17 7 0.1606 6.6459 1.1786 18 6 -0.5947 7.7403 1.5056 19 1 -1.4574 7.6293 2.1459 20 6 -0.2515 8.9924 1.0143 21 7 -1.0117 10.0339 1.2784 22 14 1.2891 9.1991 -0.0215 23 1 2.4667 9.3587 0.8691 24 1 1.4748 7.9998 -0.8774 25 1 1.1508 10.4031 -0.8797 26 6 2.0712 -0.7791 -1.2212 27 6 3.3219 -1.4650 -0.6281 28 7 3.0603 -1.5792 0.8115 29 6 2.0623 -0.7633 1.1927 30 8 1.6492 -0.6545 2.3277 31 1 -0.3634 0.5029 -0.8962 32 1 -0.3633 -1.0277 0.0125 33 1 -0.3633 0.5246 0.8836 34 1 1.1100 1.9662 1.6920 35 1 1.8981 4.1416 0.0725 36 1 3.3038 3.6173 1.0302 37 1 1.9022 6.3203 3.1211 38 1 3.2932 5.7979 2.1389 39 1 1.8739 6.2698 -1.1602 40 1 2.6885 5.0385 -0.1490 41 1 0.7879 3.7433 -0.2050 42 1 -0.0199 4.9799 -1.2169 43 1 -0.2622 4.8478 3.0496 44 1 -0.2418 3.3933 2.0201 45 1 -0.7720 10.9088 0.9348 46 1 1.3471 -1.5178 -1.5647 47 1 2.3449 -0.0989 -2.0278 48 1 3.4536 -2.4539 -1.0672 49 1 4.2066 -0.8528 -0.8032 50 1 3.5451 -2.1680 1.4109 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733565864.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:42:34 Heat of formation + Delta-G solvation = 58.106603 kcal Electronic energy + Delta-G solvation = -31677.287108 eV Core-core repulsion = 27709.186160 eV Total energy + Delta-G solvation = -3968.100948 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.83068 -41.03735 -38.70291 -36.67089 -34.94344 -33.64121 -32.68058 -31.70674 -30.91595 -30.52069 -29.11068 -26.92507 -25.74555 -23.77666 -23.67857 -22.55362 -21.85800 -20.86144 -20.19276 -19.47454 -18.90280 -17.88085 -17.60055 -17.16925 -16.33900 -15.86757 -15.67329 -15.34377 -15.02735 -14.48147 -14.11907 -14.03279 -13.86399 -13.51431 -13.31617 -13.10740 -12.93463 -12.76452 -12.71775 -12.70043 -12.53046 -12.09076 -11.88394 -11.74097 -11.70230 -11.48746 -11.43500 -11.11631 -10.93915 -10.45348 -10.30308 -10.19398 -9.94664 -9.86557 -9.76415 -9.63644 -9.51464 -9.47509 -9.22740 -8.57606 -8.34768 -6.87829 -5.94324 -3.42215 2.04240 2.49932 2.94516 3.22779 3.31067 3.42912 3.47750 3.85330 4.02479 4.34977 4.50987 4.63034 4.67599 4.84367 4.93269 5.09025 5.13160 5.14977 5.26156 5.32640 5.34443 5.36189 5.51016 5.52092 5.59466 5.63575 5.67265 5.76689 5.77609 5.80819 5.92350 6.02231 6.12979 6.17962 6.26010 6.33122 6.37225 6.40620 6.50840 6.56048 6.61376 6.64273 6.70072 6.81635 6.85918 6.97495 7.49170 7.82261 7.87716 8.13590 8.34141 8.79620 9.65736 10.31421 11.20621 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.025583 B = 0.003293 C = 0.003206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1094.229125 B = 8500.256713 C = 8731.357514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.121 4.121 3 C 0.529 3.471 4 O -0.535 6.535 5 N -0.710 5.710 6 C 0.001 3.999 7 C -0.083 4.083 8 H 0.059 0.941 9 C -0.122 4.122 10 C 0.134 3.866 11 H 0.070 0.930 12 C -0.166 4.166 13 C -0.163 4.163 14 C 0.157 3.843 15 H 0.077 0.923 16 C -0.126 4.126 17 N -0.598 5.598 18 C -0.240 4.240 19 H 0.086 0.914 20 C 0.028 3.972 21 N -0.915 5.915 22 Si 0.890 3.110 23 H -0.287 1.287 24 H -0.253 1.253 25 H -0.307 1.307 26 C -0.118 4.118 27 C 0.099 3.901 28 N -0.728 5.728 29 C 0.532 3.468 30 O -0.519 6.519 31 H 0.076 0.924 32 H 0.070 0.930 33 H 0.073 0.927 34 H 0.401 0.599 35 H 0.196 0.804 36 H 0.051 0.949 37 H 0.071 0.929 38 H 0.051 0.949 39 H 0.067 0.933 40 H 0.093 0.907 41 H 0.097 0.903 42 H 0.058 0.942 43 H 0.067 0.933 44 H 0.050 0.950 45 H 0.263 0.737 46 H 0.090 0.910 47 H 0.111 0.889 48 H 0.083 0.917 49 H 0.078 0.922 50 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.503 -24.509 -4.705 26.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.128 4.128 3 C 0.313 3.687 4 O -0.412 6.412 5 N -0.361 5.361 6 C -0.118 4.118 7 C -0.101 4.101 8 H 0.077 0.923 9 C -0.162 4.162 10 C 0.028 3.972 11 H 0.087 0.913 12 C -0.204 4.204 13 C -0.202 4.202 14 C 0.050 3.950 15 H 0.095 0.905 16 C -0.165 4.165 17 N -0.321 5.321 18 C -0.368 4.368 19 H 0.104 0.896 20 C -0.171 4.171 21 N -0.558 5.558 22 Si 0.723 3.277 23 H -0.216 1.216 24 H -0.178 1.178 25 H -0.236 1.236 26 C -0.155 4.155 27 C -0.025 4.025 28 N -0.384 5.384 29 C 0.316 3.684 30 O -0.394 6.394 31 H 0.095 0.905 32 H 0.089 0.911 33 H 0.092 0.908 34 H 0.236 0.764 35 H 0.211 0.789 36 H 0.070 0.930 37 H 0.090 0.910 38 H 0.069 0.931 39 H 0.086 0.914 40 H 0.111 0.889 41 H 0.114 0.886 42 H 0.077 0.923 43 H 0.086 0.914 44 H 0.068 0.932 45 H 0.073 0.927 46 H 0.108 0.892 47 H 0.129 0.871 48 H 0.102 0.898 49 H 0.096 0.904 50 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges 7.628 -23.757 -4.769 25.403 hybrid contribution 1.033 -0.205 0.410 1.130 sum 8.661 -23.961 -4.359 25.849 Atomic orbital electron populations 1.21702 0.89487 1.03595 1.04018 1.21653 0.99706 0.94532 0.96872 1.19590 0.81059 0.85694 0.82392 1.90689 1.36361 1.77492 1.36673 1.46320 1.49691 1.13192 1.26854 1.25258 0.98262 0.80762 1.07504 1.21172 0.96548 0.96120 0.96308 0.92260 1.22219 0.98318 0.94507 1.01202 1.21972 0.87698 0.95775 0.91754 0.91296 1.23394 0.97946 0.98741 1.00337 1.23287 0.96777 0.99882 1.00208 1.21574 0.96981 0.85612 0.90823 0.90501 1.22183 0.94344 0.98818 1.01165 1.45356 0.99973 1.05256 1.81521 1.18550 1.09350 0.84011 1.24842 0.89617 1.25324 0.98128 0.96343 0.97348 1.69741 1.37908 0.99755 1.48363 0.86863 0.82906 0.76876 0.81084 1.21564 1.17828 1.23566 1.22708 0.96534 0.99350 0.96950 1.22150 0.99036 1.01651 0.79684 1.46156 1.37096 1.43999 1.11148 1.20354 0.79603 0.79565 0.88844 1.90776 1.61262 1.66198 1.21153 0.90456 0.91101 0.90831 0.76362 0.78910 0.93032 0.91009 0.93057 0.91431 0.88906 0.88588 0.92300 0.91422 0.93192 0.92667 0.89168 0.87103 0.89837 0.90388 0.74869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.08 8.30 37.16 0.31 -0.77 16 2 C -0.12 -1.18 0.75 -155.67 -0.12 -1.30 16 3 C 0.53 6.77 6.31 -10.98 -0.07 6.70 16 4 O -0.53 -8.12 15.47 5.55 0.09 -8.03 16 5 N -0.71 -9.24 4.25 -60.30 -0.26 -9.49 16 6 C 0.00 0.01 2.69 -4.05 -0.01 0.00 16 7 C -0.08 -1.28 2.76 -90.47 -0.25 -1.53 16 8 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 9 C -0.12 -2.18 5.39 -26.00 -0.14 -2.32 16 10 C 0.13 2.78 2.83 -65.45 -0.19 2.60 16 11 H 0.07 1.58 3.04 -51.93 -0.16 1.42 16 12 C -0.17 -3.00 5.39 -25.47 -0.14 -3.14 16 13 C -0.16 -2.76 5.70 -25.46 -0.15 -2.91 16 14 C 0.16 2.97 4.32 -65.74 -0.28 2.68 16 15 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 16 C -0.13 -2.03 5.27 -26.32 -0.14 -2.17 16 17 N -0.60 -13.82 2.53 -152.45 -0.39 -14.20 16 18 C -0.24 -6.66 10.83 -15.06 -0.16 -6.82 16 19 H 0.09 2.56 8.06 -52.49 -0.42 2.14 16 20 C 0.03 0.82 5.50 -17.43 -0.10 0.72 16 21 N -0.92 -28.14 13.97 55.49 0.78 -27.36 16 22 Si 0.89 22.24 24.63 -169.99 -4.19 18.05 16 23 H -0.29 -7.08 6.92 56.52 0.39 -6.69 16 24 H -0.25 -5.89 4.33 56.52 0.24 -5.65 16 25 H -0.31 -7.89 7.11 56.52 0.40 -7.49 16 26 C -0.12 -0.83 6.02 -25.10 -0.15 -0.98 16 27 C 0.10 0.61 7.78 -3.13 -0.02 0.58 16 28 N -0.73 -5.75 6.24 -59.21 -0.37 -6.12 16 29 C 0.53 5.83 7.15 -10.86 -0.08 5.75 16 30 O -0.52 -7.33 17.87 5.56 0.10 -7.23 16 31 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.07 0.49 8.14 -51.92 -0.42 0.06 16 33 H 0.07 0.66 7.49 -51.93 -0.39 0.27 16 34 H 0.40 4.96 6.64 -40.82 -0.27 4.69 16 35 H 0.20 3.02 1.11 -166.16 -0.18 2.84 16 36 H 0.05 0.78 8.01 -51.93 -0.42 0.37 16 37 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 38 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.07 1.28 6.46 -51.93 -0.34 0.94 16 40 H 0.09 1.51 4.87 -51.93 -0.25 1.25 16 41 H 0.10 1.45 3.94 -51.93 -0.20 1.24 16 42 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 43 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 44 H 0.05 0.68 6.71 -51.93 -0.35 0.33 16 45 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 46 H 0.09 0.44 7.91 -51.93 -0.41 0.03 16 47 H 0.11 0.89 6.96 -51.93 -0.36 0.53 16 48 H 0.08 0.29 8.14 -51.93 -0.42 -0.14 16 49 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 50 H 0.41 2.54 8.96 -40.82 -0.37 2.17 16 LS Contribution 360.23 15.07 5.43 5.43 Total: -1.00 -33.56 360.23 -8.14 -41.70 By element: Atomic # 1 Polarization: 17.81 SS G_CDS: -7.65 Total: 10.16 kcal Atomic # 6 Polarization: -1.22 SS G_CDS: -1.68 Total: -2.90 kcal Atomic # 7 Polarization: -56.94 SS G_CDS: -0.24 Total: -57.18 kcal Atomic # 8 Polarization: -15.45 SS G_CDS: 0.19 Total: -15.26 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -4.19 Total: 18.05 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -33.56 -8.14 -41.70 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733565864.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.807 kcal (2) G-P(sol) polarization free energy of solvation -33.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.700 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds