Wall clock time and date at job start Tue Mar 31 2020 19:42:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50701 * 110.43246 * 2 1 4 4 O 1.21284 * 120.00112 * 237.45662 * 3 2 1 5 5 N 1.34779 * 120.00011 * 57.46224 * 3 2 1 6 6 C 1.46498 * 120.00256 * 179.97438 * 5 3 2 7 7 C 1.52995 * 109.47121 * 179.97438 * 6 5 3 8 8 H 1.09004 * 109.43299 * 59.91724 * 7 6 5 9 9 C 1.53148 * 109.43690 * 179.78064 * 7 6 5 10 10 C 1.54243 * 108.84242 * 66.08429 * 9 7 6 11 11 H 1.09003 * 112.33074 * 187.68952 * 10 9 7 12 12 C 1.54608 * 107.85890 * 312.47668 * 10 9 7 13 13 C 1.53802 * 104.85037 * 88.47206 * 12 10 9 14 14 C 1.54616 * 104.84621 * 359.97438 * 13 12 10 15 15 H 1.09003 * 112.68931 * 146.96417 * 14 13 12 16 16 C 1.53144 * 109.43915 * 300.00357 * 7 6 5 17 17 N 1.48289 * 106.99050 * 64.13630 * 10 9 7 18 18 C 1.36939 * 128.21324 * 107.53274 * 17 10 9 19 19 H 1.08002 * 120.00153 * 215.55911 * 18 17 10 20 20 C 1.38814 * 119.99764 * 35.54611 * 18 17 10 21 21 N 1.31625 * 119.99335 * 176.90228 * 20 18 17 22 22 Si 1.86788 * 120.00334 * 356.90440 * 20 18 17 23 23 H 1.48502 * 109.47214 * 276.04090 * 22 20 18 24 24 H 1.48504 * 109.47361 * 36.03798 * 22 20 18 25 25 H 1.48498 * 109.47329 * 156.03931 * 22 20 18 26 26 C 1.54633 * 110.48936 * 237.46260 * 2 1 3 27 27 C 1.54476 * 101.76534 * 216.39009 * 26 2 1 28 28 N 1.46759 * 105.47624 * 25.41188 * 27 26 2 29 29 C 1.34425 * 111.30115 * 342.98742 * 28 27 26 30 30 O 1.21279 * 124.94497 * 180.43907 * 29 28 27 31 31 H 1.09004 * 109.47172 * 60.70218 * 1 2 3 32 32 H 1.09009 * 109.46967 * 180.69782 * 1 2 3 33 33 H 1.08995 * 109.47148 * 300.69773 * 1 2 3 34 34 H 0.96999 * 119.99706 * 359.97438 * 5 3 2 35 35 H 1.08999 * 109.46874 * 59.99779 * 6 5 3 36 36 H 1.08999 * 109.47281 * 299.99696 * 6 5 3 37 37 H 1.09001 * 109.57281 * 185.99689 * 9 7 6 38 38 H 1.09007 * 109.56795 * 306.24001 * 9 7 6 39 39 H 1.09000 * 110.38614 * 207.17411 * 12 10 9 40 40 H 1.09001 * 110.38339 * 329.42631 * 12 10 9 41 41 H 1.09000 * 110.43116 * 241.10392 * 13 12 10 42 42 H 1.08994 * 110.23875 * 118.79543 * 13 12 10 43 43 H 1.08993 * 109.57324 * 174.00468 * 16 7 6 44 44 H 1.09000 * 109.56647 * 53.64238 * 16 7 6 45 45 H 0.96998 * 119.99359 * 180.02562 * 21 20 18 46 46 H 1.08997 * 110.96595 * 334.51016 * 26 2 1 47 47 H 1.09002 * 110.97117 * 98.26626 * 26 2 1 48 48 H 1.09001 * 110.24483 * 144.41530 * 27 26 2 49 49 H 1.08999 * 110.24613 * 266.41185 * 27 26 2 50 50 H 0.97003 * 124.35442 * 162.97659 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0561 1.4122 0.0000 4 8 2.7973 1.7832 -0.8854 5 7 1.7030 2.2629 0.9840 6 6 2.2149 3.6355 0.9844 7 6 1.6653 4.3844 2.2000 8 1 1.9809 3.8771 3.1117 9 6 2.2052 5.8176 2.2026 10 6 1.6288 6.5692 0.9852 11 1 2.0791 7.5533 0.8549 12 6 1.8027 5.6646 -0.2564 13 6 0.5320 4.7990 -0.2946 14 6 -0.2964 5.2573 0.9279 15 1 -1.3708 5.2029 0.7520 16 6 0.1354 4.4096 2.1343 17 7 0.1606 6.6459 1.1786 18 6 -0.5947 7.7403 1.5056 19 1 -1.4574 7.6293 2.1459 20 6 -0.2515 8.9924 1.0143 21 7 -1.0117 10.0339 1.2784 22 14 1.2891 9.1991 -0.0215 23 1 2.4667 9.3587 0.8691 24 1 1.4748 7.9998 -0.8774 25 1 1.1508 10.4031 -0.8797 26 6 2.0712 -0.7791 -1.2212 27 6 3.3219 -1.4650 -0.6281 28 7 3.0603 -1.5792 0.8115 29 6 2.0623 -0.7633 1.1927 30 8 1.6492 -0.6545 2.3277 31 1 -0.3634 0.5029 -0.8962 32 1 -0.3633 -1.0277 0.0125 33 1 -0.3633 0.5246 0.8836 34 1 1.1100 1.9662 1.6920 35 1 1.8981 4.1416 0.0725 36 1 3.3038 3.6173 1.0302 37 1 1.9022 6.3203 3.1211 38 1 3.2932 5.7979 2.1389 39 1 1.8739 6.2698 -1.1602 40 1 2.6885 5.0385 -0.1490 41 1 0.7879 3.7433 -0.2050 42 1 -0.0199 4.9799 -1.2169 43 1 -0.2622 4.8478 3.0496 44 1 -0.2418 3.3933 2.0201 45 1 -0.7720 10.9088 0.9348 46 1 1.3471 -1.5178 -1.5647 47 1 2.3449 -0.0989 -2.0278 48 1 3.4536 -2.4539 -1.0672 49 1 4.2066 -0.8528 -0.8032 50 1 3.5451 -2.1680 1.4109 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733565864.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:42:32 Heat of formation + Delta-G solvation = 32.673492 kcal Electronic energy + Delta-G solvation = -31678.389971 eV Core-core repulsion = 27709.186160 eV Total energy + Delta-G solvation = -3969.203811 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -43.05099 -41.99158 -39.71547 -37.46302 -36.29744 -34.78999 -34.10499 -33.07117 -32.53951 -32.11541 -29.75575 -28.38417 -26.47976 -25.41131 -25.10365 -23.53497 -22.64805 -22.19562 -21.62606 -20.74916 -20.22899 -18.87661 -18.68286 -18.31238 -17.91975 -17.33283 -16.69596 -16.25446 -16.06463 -15.49365 -15.36943 -15.08564 -14.90971 -14.79142 -14.71215 -14.44403 -14.36459 -14.22301 -13.68897 -13.54215 -13.41480 -13.34301 -13.31349 -13.16835 -12.99427 -12.81816 -12.64001 -12.28330 -12.24507 -12.09389 -11.74458 -11.57230 -11.33628 -11.19351 -11.09216 -10.99769 -10.87315 -10.75185 -10.57576 -10.13073 -9.56024 -8.80493 -8.15789 -5.59899 1.19963 1.29293 1.38463 1.48702 1.59206 2.19015 2.40462 2.41267 3.10910 3.19028 3.21175 3.39998 3.64531 3.75500 3.79563 3.83181 3.94407 4.10455 4.11390 4.14664 4.26449 4.31561 4.40641 4.42128 4.53542 4.65145 4.70875 4.73474 4.77802 4.78348 4.79433 4.90453 4.95284 5.04370 5.06805 5.14051 5.15348 5.18805 5.19391 5.29963 5.34086 5.41867 5.47643 5.54577 5.71874 5.87037 5.91861 6.15931 6.48412 6.75604 7.10626 7.15931 7.50662 8.27752 9.02578 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.025583 B = 0.003293 C = 0.003206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1094.229125 B = 8500.256713 C = 8731.357514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.119 4.119 3 C 0.527 3.473 4 O -0.558 6.558 5 N -0.709 5.709 6 C 0.009 3.991 7 C -0.074 4.074 8 H 0.075 0.925 9 C -0.120 4.120 10 C 0.122 3.878 11 H 0.049 0.951 12 C -0.161 4.161 13 C -0.152 4.152 14 C 0.149 3.851 15 H 0.067 0.933 16 C -0.118 4.118 17 N -0.619 5.619 18 C -0.225 4.225 19 H 0.048 0.952 20 C -0.034 4.034 21 N -0.966 5.966 22 Si 0.950 3.050 23 H -0.283 1.283 24 H -0.226 1.226 25 H -0.319 1.319 26 C -0.115 4.115 27 C 0.097 3.903 28 N -0.718 5.718 29 C 0.525 3.475 30 O -0.558 6.558 31 H 0.085 0.915 32 H 0.086 0.914 33 H 0.063 0.937 34 H 0.405 0.595 35 H 0.187 0.813 36 H 0.054 0.946 37 H 0.050 0.950 38 H 0.076 0.924 39 H 0.061 0.939 40 H 0.120 0.880 41 H 0.121 0.879 42 H 0.058 0.942 43 H 0.047 0.953 44 H 0.081 0.919 45 H 0.261 0.739 46 H 0.117 0.883 47 H 0.103 0.897 48 H 0.119 0.881 49 H 0.071 0.929 50 H 0.421 0.579 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.453 -28.311 -6.217 30.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.125 4.125 3 C 0.312 3.688 4 O -0.437 6.437 5 N -0.360 5.360 6 C -0.110 4.110 7 C -0.093 4.093 8 H 0.094 0.906 9 C -0.160 4.160 10 C 0.017 3.983 11 H 0.066 0.934 12 C -0.199 4.199 13 C -0.190 4.190 14 C 0.043 3.957 15 H 0.085 0.915 16 C -0.157 4.157 17 N -0.343 5.343 18 C -0.354 4.354 19 H 0.065 0.935 20 C -0.229 4.229 21 N -0.612 5.612 22 Si 0.781 3.219 23 H -0.211 1.211 24 H -0.150 1.150 25 H -0.249 1.249 26 C -0.152 4.152 27 C -0.026 4.026 28 N -0.372 5.372 29 C 0.309 3.691 30 O -0.437 6.437 31 H 0.104 0.896 32 H 0.105 0.895 33 H 0.082 0.918 34 H 0.242 0.758 35 H 0.202 0.798 36 H 0.072 0.928 37 H 0.069 0.931 38 H 0.095 0.905 39 H 0.079 0.921 40 H 0.137 0.863 41 H 0.139 0.861 42 H 0.077 0.923 43 H 0.066 0.934 44 H 0.099 0.901 45 H 0.070 0.930 46 H 0.136 0.864 47 H 0.121 0.879 48 H 0.137 0.863 49 H 0.090 0.910 50 H 0.261 0.739 Dipole moment (debyes) X Y Z Total from point charges 9.613 -27.649 -6.296 29.942 hybrid contribution 0.400 0.867 0.954 1.350 sum 10.013 -26.782 -5.342 29.087 Atomic orbital electron populations 1.21760 0.88447 1.04731 1.03988 1.21685 1.00555 0.92578 0.97729 1.20084 0.80401 0.86698 0.81589 1.90683 1.37303 1.78230 1.37458 1.46264 1.49839 1.12636 1.27296 1.24935 0.98368 0.81558 1.06155 1.21080 0.95615 0.94904 0.97691 0.90645 1.22148 0.99821 0.95326 0.98678 1.22158 0.85869 0.95877 0.94431 0.93360 1.23432 0.99501 0.98604 0.98372 1.23250 0.95783 1.01042 0.98899 1.21792 0.97046 0.83765 0.93099 0.91485 1.22073 0.95129 0.99694 0.98806 1.45418 1.01350 1.05603 1.81906 1.18396 1.08322 0.85719 1.22938 0.93458 1.26043 1.01466 0.96069 0.99319 1.69896 1.40308 1.00235 1.50731 0.85901 0.79221 0.77061 0.79694 1.21081 1.15020 1.24890 1.22797 0.97419 0.99499 0.95521 1.22336 0.98315 1.03488 0.78501 1.46211 1.35881 1.42955 1.12203 1.20592 0.80044 0.79940 0.88520 1.90754 1.62692 1.67620 1.22604 0.89567 0.89467 0.91783 0.75815 0.79790 0.92787 0.93107 0.90538 0.92089 0.86263 0.86123 0.92292 0.93401 0.90096 0.93021 0.86440 0.87862 0.86321 0.91029 0.73925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.78 8.30 71.98 0.60 -1.18 16 2 C -0.12 -1.95 0.75 -52.93 -0.04 -1.99 16 3 C 0.53 11.89 6.31 87.66 0.55 12.44 16 4 O -0.56 -15.23 15.47 -3.04 -0.05 -15.28 16 5 N -0.71 -16.25 4.25 -463.07 -1.97 -18.22 16 6 C 0.01 0.24 2.69 86.38 0.23 0.47 16 7 C -0.07 -2.10 2.76 -10.70 -0.03 -2.13 16 8 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 9 C -0.12 -4.06 5.39 31.07 0.17 -3.89 16 10 C 0.12 4.90 2.83 45.62 0.13 5.02 16 11 H 0.05 2.15 3.04 -2.39 -0.01 2.14 16 12 C -0.16 -5.39 5.39 31.41 0.17 -5.22 16 13 C -0.15 -4.76 5.70 31.41 0.18 -4.58 16 14 C 0.15 5.49 4.32 45.41 0.20 5.68 16 15 H 0.07 2.57 8.14 -2.39 -0.02 2.55 16 16 C -0.12 -3.62 5.27 30.86 0.16 -3.46 16 17 N -0.62 -28.71 2.53 -636.24 -1.61 -30.32 16 18 C -0.22 -12.95 10.83 84.03 0.91 -12.04 16 19 H 0.05 3.02 8.06 -2.91 -0.02 3.00 16 20 C -0.03 -2.04 5.50 84.86 0.47 -1.58 16 21 N -0.97 -62.13 13.97 21.65 0.30 -61.83 16 22 Si 0.95 46.98 24.63 68.60 1.69 48.67 16 23 H -0.28 -13.59 6.92 99.48 0.69 -12.91 16 24 H -0.23 -10.05 4.33 99.48 0.43 -9.62 16 25 H -0.32 -16.25 7.11 99.48 0.71 -15.55 16 26 C -0.11 -1.19 6.02 31.65 0.19 -1.00 16 27 C 0.10 0.82 7.78 86.83 0.68 1.50 16 28 N -0.72 -9.13 6.24 -459.82 -2.87 -12.00 16 29 C 0.52 10.12 7.15 87.90 0.63 10.75 16 30 O -0.56 -14.78 17.87 -3.03 -0.05 -14.83 16 31 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 32 H 0.09 0.90 8.14 -2.38 -0.02 0.88 16 33 H 0.06 0.99 7.49 -2.39 -0.02 0.97 16 34 H 0.41 8.82 6.64 -92.71 -0.62 8.20 16 35 H 0.19 5.12 1.11 -109.68 -0.12 5.00 16 36 H 0.05 1.43 8.01 -2.39 -0.02 1.41 16 37 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 38 H 0.08 2.21 8.14 -2.38 -0.02 2.19 16 39 H 0.06 2.13 6.46 -2.39 -0.02 2.11 16 40 H 0.12 3.41 4.87 -2.39 -0.01 3.40 16 41 H 0.12 3.23 3.94 -2.39 -0.01 3.22 16 42 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 43 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 44 H 0.08 1.99 6.71 -2.39 -0.02 1.98 16 45 H 0.26 16.01 8.31 -92.71 -0.77 15.24 16 46 H 0.12 0.59 7.91 -2.39 -0.02 0.58 16 47 H 0.10 1.31 6.96 -2.39 -0.02 1.30 16 48 H 0.12 0.23 8.14 -2.39 -0.02 0.21 16 49 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 50 H 0.42 3.99 8.96 -92.71 -0.83 3.16 16 Total: -1.00 -76.24 360.23 -0.23 -76.47 By element: Atomic # 1 Polarization: 29.39 SS G_CDS: -0.86 Total: 28.53 kcal Atomic # 6 Polarization: -6.38 SS G_CDS: 5.19 Total: -1.19 kcal Atomic # 7 Polarization: -116.22 SS G_CDS: -6.14 Total: -122.36 kcal Atomic # 8 Polarization: -30.01 SS G_CDS: -0.10 Total: -30.11 kcal Atomic # 14 Polarization: 46.98 SS G_CDS: 1.69 Total: 48.67 kcal Total: -76.24 -0.23 -76.47 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733565864.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.141 kcal (2) G-P(sol) polarization free energy of solvation -76.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.468 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds