Wall clock time and date at job start Tue Mar 31 2020 18:36:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.35427 * 117.00711 * 2 1 4 4 N 1.32238 * 119.79506 * 0.02562 * 3 2 1 5 5 C 1.31874 * 121.80134 * 179.97438 * 4 3 2 6 6 C 1.50702 * 119.40929 * 179.97438 * 5 4 3 7 7 C 1.38360 * 121.18571 * 0.27526 * 5 4 3 8 8 C 1.38339 * 119.45317 * 359.45210 * 7 5 4 9 9 C 1.39988 * 118.35056 * 0.52956 * 8 7 5 10 10 C 1.47528 * 120.59599 * 179.70746 * 9 8 7 11 11 O 1.21587 * 119.99774 * 146.30726 * 10 9 8 12 12 N 1.34779 * 119.99810 * 326.30832 * 10 9 8 13 13 C 1.46490 * 120.00508 * 5.46144 * 12 10 9 14 14 C 1.46502 * 119.99363 * 185.46828 * 12 10 9 15 15 C 1.52994 * 109.47707 * 89.99767 * 14 12 10 16 16 C 1.53005 * 109.47141 * 300.00176 * 15 14 12 17 17 C 1.53007 * 109.47113 * 59.99654 * 15 14 12 18 18 C 1.52996 * 109.47607 * 179.97438 * 15 14 12 19 19 N 1.46501 * 109.47273 * 179.97438 * 18 15 14 20 20 C 1.36938 * 119.99879 * 179.97438 * 19 18 15 21 21 H 1.08005 * 119.99851 * 0.02562 * 20 19 18 22 22 C 1.38804 * 120.00100 * 180.02562 * 20 19 18 23 23 N 1.31625 * 119.99971 * 0.02562 * 22 20 19 24 24 Si 1.86801 * 120.00268 * 180.02562 * 22 20 19 25 25 H 1.48502 * 109.46997 * 0.02562 * 24 22 20 26 26 H 1.48506 * 109.47043 * 119.99931 * 24 22 20 27 27 H 1.48499 * 109.47423 * 239.99830 * 24 22 20 28 28 H 1.09003 * 109.47179 * 299.99990 * 1 2 3 29 29 H 1.09004 * 109.46974 * 59.99958 * 1 2 3 30 30 H 1.08997 * 109.47506 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.47229 * 90.00333 * 6 5 4 32 32 H 1.08998 * 109.46792 * 329.99884 * 6 5 4 33 33 H 1.09005 * 109.47038 * 209.99856 * 6 5 4 34 34 H 1.07998 * 120.26972 * 179.72573 * 7 5 4 35 35 H 1.08001 * 120.82435 * 180.26552 * 8 7 5 36 36 H 1.09005 * 109.47042 * 95.79850 * 13 12 10 37 37 H 1.09000 * 109.47595 * 215.80366 * 13 12 10 38 38 H 1.08999 * 109.47288 * 335.80266 * 13 12 10 39 39 H 1.09007 * 109.46773 * 210.00172 * 14 12 10 40 40 H 1.09003 * 109.47009 * 329.99343 * 14 12 10 41 41 H 1.08992 * 109.47494 * 59.99391 * 16 15 14 42 42 H 1.09001 * 109.46950 * 180.02562 * 16 15 14 43 43 H 1.09003 * 109.46679 * 299.99875 * 16 15 14 44 44 H 1.08998 * 109.46597 * 59.99887 * 17 15 14 45 45 H 1.08992 * 109.47284 * 180.02562 * 17 15 14 46 46 H 1.09004 * 109.46907 * 300.00620 * 17 15 14 47 47 H 1.08995 * 109.47503 * 300.00351 * 18 15 14 48 48 H 1.09003 * 109.46588 * 59.99896 * 18 15 14 49 49 H 0.96996 * 119.99760 * 0.02562 * 19 18 15 50 50 H 0.96996 * 119.99769 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0439 1.2066 0.0000 4 7 1.3199 2.3131 0.0005 5 6 1.8772 3.5083 0.0010 6 6 1.0001 4.7338 0.0010 7 6 3.2527 3.6574 -0.0046 8 6 4.0588 2.5331 0.0006 9 6 3.4449 1.2750 0.0001 10 6 4.2569 0.0433 -0.0010 11 8 3.8603 -0.9468 0.5827 12 7 5.4384 0.0156 -0.6490 13 6 5.9730 1.2398 -1.2502 14 6 6.1879 -1.2389 -0.7522 15 6 5.7655 -1.9826 -2.0208 16 6 4.2674 -2.2872 -1.9585 17 6 6.0584 -1.1114 -3.2441 18 6 6.5487 -3.2924 -2.1289 19 7 6.1438 -4.0048 -3.3433 20 6 6.7147 -5.2105 -3.6524 21 1 7.4632 -5.6364 -3.0007 22 6 6.3315 -5.8852 -4.8033 23 7 5.4196 -5.3658 -5.5979 24 14 7.1098 -7.5302 -5.2246 25 1 8.0988 -7.8925 -4.1778 26 1 6.0555 -8.5740 -5.2914 27 1 7.7933 -7.4323 -6.5394 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 0.7883 5.0291 1.0286 32 1 0.0652 4.5114 -0.5132 33 1 1.5127 5.5474 -0.5124 34 1 3.6934 4.6433 -0.0086 35 1 5.1350 2.6238 0.0006 36 1 6.6732 1.7085 -0.5586 37 1 6.4889 0.9936 -2.1783 38 1 5.1548 1.9284 -1.4610 39 1 7.2552 -1.0219 -0.7965 40 1 5.9793 -1.8595 0.1193 41 1 3.7097 -1.3539 -1.8818 42 1 3.9666 -2.8174 -2.8621 43 1 4.0588 -2.9078 -1.0871 44 1 7.1256 -0.8944 -3.2884 45 1 5.7571 -1.6410 -4.1478 46 1 5.5007 -0.1780 -3.1673 47 1 7.6158 -3.0751 -2.1734 48 1 6.3404 -3.9132 -1.2574 49 1 5.4718 -3.6220 -3.9288 50 1 5.1516 -5.8375 -6.4019 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001734024779.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:36:34 Heat of formation + Delta-G solvation = -4.690806 kcal Electronic energy + Delta-G solvation = -30191.166028 eV Core-core repulsion = 26220.341979 eV Total energy + Delta-G solvation = -3970.824048 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.32449 -39.71225 -38.26666 -37.18208 -35.23775 -33.68712 -32.66804 -32.06112 -30.14913 -28.81012 -28.02923 -27.33685 -26.50708 -25.83620 -25.15197 -23.38724 -22.90741 -22.31505 -20.06291 -18.38292 -18.26649 -17.33556 -17.20132 -17.11850 -16.32515 -15.78360 -15.53801 -15.22982 -14.53086 -14.47307 -14.41808 -14.27310 -13.85336 -13.66244 -13.63477 -13.16928 -13.00707 -12.87248 -12.74601 -12.62715 -12.60121 -12.32927 -12.20640 -11.91768 -11.81300 -11.24267 -11.14606 -11.04156 -10.91612 -10.78600 -10.66967 -10.29022 -10.18492 -10.14254 -10.06407 -9.87126 -9.63300 -9.48533 -8.80188 -8.71916 -8.46034 -6.81945 -5.69489 -2.96662 0.47759 0.95014 2.71988 2.88602 3.00953 3.47703 3.51435 3.53292 3.55566 3.79859 4.28985 4.41303 4.64106 4.66615 4.79139 4.95956 4.98758 5.11472 5.13289 5.15448 5.16673 5.18494 5.25187 5.36249 5.46983 5.49240 5.53461 5.54683 5.57148 5.63480 5.68191 5.79402 5.99881 6.04026 6.06388 6.19052 6.23250 6.36640 6.51220 6.61010 6.69773 6.81800 6.85544 7.01517 7.02835 7.07159 7.37274 7.53826 7.77422 8.26655 8.50172 9.61195 10.21048 10.55865 11.53806 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.019747 B = 0.002645 C = 0.002504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1417.619006 B =10584.822470 C =11179.466034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.276 6.276 3 C 0.377 3.623 4 N -0.546 5.546 5 C 0.188 3.812 6 C -0.108 4.108 7 C -0.224 4.224 8 C -0.019 4.019 9 C -0.211 4.211 10 C 0.567 3.433 11 O -0.510 6.510 12 N -0.605 5.605 13 C 0.054 3.946 14 C 0.129 3.871 15 C -0.086 4.086 16 C -0.123 4.123 17 C -0.136 4.136 18 C 0.166 3.834 19 N -0.728 5.728 20 C -0.233 4.233 21 H 0.070 0.930 22 C -0.017 4.017 23 N -0.935 5.935 24 Si 0.906 3.094 25 H -0.281 1.281 26 H -0.292 1.292 27 H -0.293 1.293 28 H 0.059 0.941 29 H 0.059 0.941 30 H 0.100 0.900 31 H 0.083 0.917 32 H 0.079 0.921 33 H 0.080 0.920 34 H 0.142 0.858 35 H 0.158 0.842 36 H 0.058 0.942 37 H 0.081 0.919 38 H 0.081 0.919 39 H 0.076 0.924 40 H 0.086 0.914 41 H 0.038 0.962 42 H 0.059 0.941 43 H 0.055 0.945 44 H 0.049 0.951 45 H 0.066 0.934 46 H 0.045 0.955 47 H 0.017 0.983 48 H 0.020 0.980 49 H 0.385 0.615 50 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.695 25.175 12.472 28.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.180 6.180 3 C 0.197 3.803 4 N -0.271 5.271 5 C 0.051 3.949 6 C -0.165 4.165 7 C -0.244 4.244 8 C -0.044 4.044 9 C -0.217 4.217 10 C 0.354 3.646 11 O -0.385 6.385 12 N -0.338 5.338 13 C -0.089 4.089 14 C 0.006 3.994 15 C -0.087 4.087 16 C -0.180 4.180 17 C -0.193 4.193 18 C 0.037 3.963 19 N -0.373 5.373 20 C -0.365 4.365 21 H 0.088 0.912 22 C -0.212 4.212 23 N -0.584 5.584 24 Si 0.737 3.263 25 H -0.206 1.206 26 H -0.220 1.220 27 H -0.220 1.220 28 H 0.077 0.923 29 H 0.078 0.922 30 H 0.118 0.882 31 H 0.101 0.899 32 H 0.098 0.902 33 H 0.099 0.901 34 H 0.160 0.840 35 H 0.176 0.824 36 H 0.076 0.924 37 H 0.099 0.901 38 H 0.100 0.900 39 H 0.095 0.905 40 H 0.105 0.895 41 H 0.057 0.943 42 H 0.078 0.922 43 H 0.074 0.926 44 H 0.068 0.932 45 H 0.085 0.915 46 H 0.064 0.936 47 H 0.035 0.965 48 H 0.038 0.962 49 H 0.220 0.780 50 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -6.607 24.092 12.805 28.072 hybrid contribution 0.863 -0.574 -0.640 1.218 sum -5.743 23.518 12.165 27.094 Atomic orbital electron populations 1.22949 0.77163 1.03501 1.02165 1.86470 1.22716 1.23131 1.85698 1.19746 0.88003 0.84933 0.87667 1.67260 1.40310 0.98206 1.21356 1.21161 0.92205 0.91945 0.89624 1.20815 0.99440 0.92783 1.03486 1.21732 0.93845 0.99873 1.08980 1.22128 1.01512 0.90320 0.90491 1.19942 0.91687 0.95348 1.14750 1.17709 0.80645 0.86982 0.79223 1.90832 1.69761 1.35079 1.42875 1.47586 1.20887 1.10306 1.55004 1.22551 0.99689 0.87427 0.99249 1.21564 0.94649 0.84043 0.99101 1.21115 0.97279 0.96087 0.94266 1.21696 0.93748 1.00215 1.02365 1.21895 1.00293 0.98589 0.98543 1.20580 0.95027 0.89858 0.90798 1.42401 1.48904 1.22016 1.23969 1.19291 1.16671 0.95925 1.04582 0.91223 1.24719 0.99653 0.99037 0.97819 1.69674 1.34297 1.39315 1.15114 0.86125 0.78337 0.84015 0.77787 1.20617 1.21972 1.22003 0.92275 0.92242 0.88202 0.89870 0.90191 0.90109 0.83987 0.82442 0.92353 0.90061 0.90041 0.90519 0.89538 0.94340 0.92177 0.92556 0.93225 0.91497 0.93623 0.96486 0.96244 0.78013 0.93689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.41 10.38 101.05 1.05 1.46 16 2 O -0.28 -4.16 9.09 -35.98 -0.33 -4.49 16 3 C 0.38 5.21 7.48 -16.61 -0.12 5.09 16 4 N -0.55 -6.45 9.11 -9.21 -0.08 -6.53 16 5 C 0.19 1.67 6.78 -82.53 -0.56 1.11 16 6 C -0.11 -0.57 10.16 36.01 0.37 -0.21 16 7 C -0.22 -1.67 9.71 -39.50 -0.38 -2.05 16 8 C -0.02 -0.17 7.53 -38.89 -0.29 -0.46 16 9 C -0.21 -2.72 5.47 -104.69 -0.57 -3.29 16 10 C 0.57 8.57 5.53 -12.47 -0.07 8.50 16 11 O -0.51 -9.61 14.12 -12.72 -0.18 -9.79 16 12 N -0.60 -7.77 2.40 -182.82 -0.44 -8.21 16 13 C 0.05 0.47 7.94 59.84 0.48 0.94 16 14 C 0.13 1.86 4.63 -4.04 -0.02 1.84 16 15 C -0.09 -1.49 0.60 -154.51 -0.09 -1.59 16 16 C -0.12 -2.38 7.06 37.16 0.26 -2.11 16 17 C -0.14 -2.21 7.06 37.16 0.26 -1.95 16 18 C 0.17 3.48 5.15 -4.04 -0.02 3.46 16 19 N -0.73 -18.93 5.00 -59.91 -0.30 -19.23 16 20 C -0.23 -6.71 9.99 -15.06 -0.15 -6.86 16 21 H 0.07 1.95 7.83 -52.48 -0.41 1.54 16 22 C -0.02 -0.49 5.50 -17.43 -0.10 -0.59 16 23 N -0.93 -28.92 13.06 55.49 0.72 -28.19 16 24 Si 0.91 22.99 29.55 -169.99 -5.02 17.97 16 25 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 26 H -0.29 -7.48 7.11 56.52 0.40 -7.08 16 27 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 28 H 0.06 0.58 8.10 -51.93 -0.42 0.16 16 29 H 0.06 0.60 8.10 -51.93 -0.42 0.18 16 30 H 0.10 0.94 8.14 -51.93 -0.42 0.51 16 31 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.08 0.26 8.07 -51.93 -0.42 -0.16 16 34 H 0.14 0.59 8.06 -52.49 -0.42 0.17 16 35 H 0.16 0.98 5.09 -52.49 -0.27 0.71 16 36 H 0.06 0.36 7.57 -51.93 -0.39 -0.03 16 37 H 0.08 0.71 5.81 -51.93 -0.30 0.41 16 38 H 0.08 0.64 4.60 -51.93 -0.24 0.40 16 39 H 0.08 0.94 8.07 -51.92 -0.42 0.52 16 40 H 0.09 1.38 7.35 -51.93 -0.38 1.00 16 41 H 0.04 0.72 6.22 -51.93 -0.32 0.39 16 42 H 0.06 1.30 6.86 -51.93 -0.36 0.94 16 43 H 0.06 1.16 7.86 -51.93 -0.41 0.75 16 44 H 0.05 0.74 8.10 -51.93 -0.42 0.32 16 45 H 0.07 1.30 6.86 -51.93 -0.36 0.94 16 46 H 0.04 0.65 5.89 -51.93 -0.31 0.34 16 47 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 48 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 49 H 0.38 10.51 5.36 -40.82 -0.22 10.29 16 50 H 0.25 7.56 8.31 -40.82 -0.34 7.22 16 LS Contribution 389.47 15.07 5.87 5.87 Total: -1.00 -35.96 389.47 -7.46 -43.42 By element: Atomic # 1 Polarization: 13.64 SS G_CDS: -7.73 Total: 5.90 kcal Atomic # 6 Polarization: 3.25 SS G_CDS: 0.03 Total: 3.29 kcal Atomic # 7 Polarization: -62.07 SS G_CDS: -0.10 Total: -62.17 kcal Atomic # 8 Polarization: -13.78 SS G_CDS: -0.51 Total: -14.28 kcal Atomic # 14 Polarization: 22.99 SS G_CDS: -5.02 Total: 17.97 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -35.96 -7.46 -43.42 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734024779.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.732 kcal (2) G-P(sol) polarization free energy of solvation -35.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.423 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds