Wall clock time and date at job start Tue Mar 31 2020 18:36:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.35427 * 117.00711 * 2 1 4 4 N 1.32238 * 119.79506 * 0.02562 * 3 2 1 5 5 C 1.31874 * 121.80134 * 179.97438 * 4 3 2 6 6 C 1.50702 * 119.40929 * 179.97438 * 5 4 3 7 7 C 1.38360 * 121.18571 * 0.27526 * 5 4 3 8 8 C 1.38339 * 119.45317 * 359.45210 * 7 5 4 9 9 C 1.39988 * 118.35056 * 0.52956 * 8 7 5 10 10 C 1.47528 * 120.59599 * 179.70746 * 9 8 7 11 11 O 1.21587 * 119.99774 * 146.30726 * 10 9 8 12 12 N 1.34779 * 119.99810 * 326.30832 * 10 9 8 13 13 C 1.46490 * 120.00508 * 5.46144 * 12 10 9 14 14 C 1.46502 * 119.99363 * 185.46828 * 12 10 9 15 15 C 1.52994 * 109.47707 * 89.99767 * 14 12 10 16 16 C 1.53005 * 109.47141 * 300.00176 * 15 14 12 17 17 C 1.53007 * 109.47113 * 59.99654 * 15 14 12 18 18 C 1.52996 * 109.47607 * 179.97438 * 15 14 12 19 19 N 1.46501 * 109.47273 * 179.97438 * 18 15 14 20 20 C 1.36938 * 119.99879 * 179.97438 * 19 18 15 21 21 H 1.08005 * 119.99851 * 0.02562 * 20 19 18 22 22 C 1.38804 * 120.00100 * 180.02562 * 20 19 18 23 23 N 1.31625 * 119.99971 * 0.02562 * 22 20 19 24 24 Si 1.86801 * 120.00268 * 180.02562 * 22 20 19 25 25 H 1.48502 * 109.46997 * 0.02562 * 24 22 20 26 26 H 1.48506 * 109.47043 * 119.99931 * 24 22 20 27 27 H 1.48499 * 109.47423 * 239.99830 * 24 22 20 28 28 H 1.09003 * 109.47179 * 299.99990 * 1 2 3 29 29 H 1.09004 * 109.46974 * 59.99958 * 1 2 3 30 30 H 1.08997 * 109.47506 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.47229 * 90.00333 * 6 5 4 32 32 H 1.08998 * 109.46792 * 329.99884 * 6 5 4 33 33 H 1.09005 * 109.47038 * 209.99856 * 6 5 4 34 34 H 1.07998 * 120.26972 * 179.72573 * 7 5 4 35 35 H 1.08001 * 120.82435 * 180.26552 * 8 7 5 36 36 H 1.09005 * 109.47042 * 95.79850 * 13 12 10 37 37 H 1.09000 * 109.47595 * 215.80366 * 13 12 10 38 38 H 1.08999 * 109.47288 * 335.80266 * 13 12 10 39 39 H 1.09007 * 109.46773 * 210.00172 * 14 12 10 40 40 H 1.09003 * 109.47009 * 329.99343 * 14 12 10 41 41 H 1.08992 * 109.47494 * 59.99391 * 16 15 14 42 42 H 1.09001 * 109.46950 * 180.02562 * 16 15 14 43 43 H 1.09003 * 109.46679 * 299.99875 * 16 15 14 44 44 H 1.08998 * 109.46597 * 59.99887 * 17 15 14 45 45 H 1.08992 * 109.47284 * 180.02562 * 17 15 14 46 46 H 1.09004 * 109.46907 * 300.00620 * 17 15 14 47 47 H 1.08995 * 109.47503 * 300.00351 * 18 15 14 48 48 H 1.09003 * 109.46588 * 59.99896 * 18 15 14 49 49 H 0.96996 * 119.99760 * 0.02562 * 19 18 15 50 50 H 0.96996 * 119.99769 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0439 1.2066 0.0000 4 7 1.3199 2.3131 0.0005 5 6 1.8772 3.5083 0.0010 6 6 1.0001 4.7338 0.0010 7 6 3.2527 3.6574 -0.0046 8 6 4.0588 2.5331 0.0006 9 6 3.4449 1.2750 0.0001 10 6 4.2569 0.0433 -0.0010 11 8 3.8603 -0.9468 0.5827 12 7 5.4384 0.0156 -0.6490 13 6 5.9730 1.2398 -1.2502 14 6 6.1879 -1.2389 -0.7522 15 6 5.7655 -1.9826 -2.0208 16 6 4.2674 -2.2872 -1.9585 17 6 6.0584 -1.1114 -3.2441 18 6 6.5487 -3.2924 -2.1289 19 7 6.1438 -4.0048 -3.3433 20 6 6.7147 -5.2105 -3.6524 21 1 7.4632 -5.6364 -3.0007 22 6 6.3315 -5.8852 -4.8033 23 7 5.4196 -5.3658 -5.5979 24 14 7.1098 -7.5302 -5.2246 25 1 8.0988 -7.8925 -4.1778 26 1 6.0555 -8.5740 -5.2914 27 1 7.7933 -7.4323 -6.5394 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 0.7883 5.0291 1.0286 32 1 0.0652 4.5114 -0.5132 33 1 1.5127 5.5474 -0.5124 34 1 3.6934 4.6433 -0.0086 35 1 5.1350 2.6238 0.0006 36 1 6.6732 1.7085 -0.5586 37 1 6.4889 0.9936 -2.1783 38 1 5.1548 1.9284 -1.4610 39 1 7.2552 -1.0219 -0.7965 40 1 5.9793 -1.8595 0.1193 41 1 3.7097 -1.3539 -1.8818 42 1 3.9666 -2.8174 -2.8621 43 1 4.0588 -2.9078 -1.0871 44 1 7.1256 -0.8944 -3.2884 45 1 5.7571 -1.6410 -4.1478 46 1 5.5007 -0.1780 -3.1673 47 1 7.6158 -3.0751 -2.1734 48 1 6.3404 -3.9132 -1.2574 49 1 5.4718 -3.6220 -3.9288 50 1 5.1516 -5.8375 -6.4019 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001734024779.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:36:33 Heat of formation + Delta-G solvation = -29.750287 kcal Electronic energy + Delta-G solvation = -30192.252688 eV Core-core repulsion = 26220.341979 eV Total energy + Delta-G solvation = -3971.910709 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -42.18946 -40.78455 -39.13173 -38.62779 -36.50681 -35.19652 -33.88466 -32.77602 -32.12278 -29.52370 -29.03680 -28.42707 -27.80919 -27.35074 -26.51446 -24.67701 -23.91420 -23.46597 -21.13300 -19.89062 -19.21008 -19.10064 -18.24402 -18.04369 -17.28043 -16.93146 -16.74935 -16.50509 -15.90059 -15.61905 -15.45297 -15.18410 -15.17288 -15.00340 -14.81104 -14.40701 -14.17637 -14.08927 -13.84809 -13.70710 -13.55532 -13.32164 -13.10467 -12.96721 -12.89419 -12.77074 -12.69493 -12.51562 -12.42109 -12.27474 -12.06994 -11.98217 -11.67924 -11.65400 -11.51214 -11.14285 -10.94751 -10.84276 -10.48065 -9.65609 -9.40517 -8.97207 -7.94359 -5.22270 -0.29533 0.22975 1.45716 1.47373 1.57353 1.71379 2.03142 2.08190 2.56432 2.69741 3.09630 3.38916 3.56534 3.72270 3.83181 3.90211 3.92840 3.97292 4.17863 4.25475 4.29107 4.32716 4.33256 4.36318 4.47266 4.57698 4.63207 4.63958 4.71420 4.78490 4.80543 4.82030 4.87266 4.91243 4.94784 4.96330 5.00551 5.13964 5.15610 5.16956 5.18633 5.41194 5.48968 5.49298 5.53616 5.57976 6.17204 6.28124 6.39838 6.76621 7.20544 7.34331 8.11476 8.35299 9.29795 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.019747 B = 0.002645 C = 0.002504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1417.619006 B =10584.822470 C =11179.466034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.313 6.313 3 C 0.347 3.653 4 N -0.562 5.562 5 C 0.177 3.823 6 C -0.105 4.105 7 C -0.207 4.207 8 C -0.011 4.011 9 C -0.238 4.238 10 C 0.561 3.439 11 O -0.564 6.564 12 N -0.601 5.601 13 C 0.044 3.956 14 C 0.137 3.863 15 C -0.077 4.077 16 C -0.105 4.105 17 C -0.126 4.126 18 C 0.164 3.836 19 N -0.740 5.740 20 C -0.241 4.241 21 H 0.075 0.925 22 C -0.079 4.079 23 N -0.971 5.971 24 Si 0.975 3.025 25 H -0.266 1.266 26 H -0.296 1.296 27 H -0.291 1.291 28 H 0.064 0.936 29 H 0.062 0.938 30 H 0.107 0.893 31 H 0.095 0.905 32 H 0.072 0.928 33 H 0.110 0.890 34 H 0.188 0.812 35 H 0.190 0.810 36 H 0.096 0.904 37 H 0.086 0.914 38 H 0.093 0.907 39 H 0.111 0.889 40 H 0.066 0.934 41 H 0.042 0.958 42 H 0.028 0.972 43 H 0.032 0.968 44 H 0.070 0.930 45 H 0.029 0.971 46 H 0.068 0.932 47 H 0.034 0.966 48 H 0.008 0.992 49 H 0.375 0.625 50 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.601 28.623 12.970 31.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.219 6.219 3 C 0.168 3.832 4 N -0.288 5.288 5 C 0.039 3.961 6 C -0.162 4.162 7 C -0.227 4.227 8 C -0.035 4.035 9 C -0.245 4.245 10 C 0.350 3.650 11 O -0.443 6.443 12 N -0.333 5.333 13 C -0.097 4.097 14 C 0.014 3.986 15 C -0.078 4.078 16 C -0.163 4.163 17 C -0.183 4.183 18 C 0.037 3.963 19 N -0.383 5.383 20 C -0.372 4.372 21 H 0.093 0.907 22 C -0.271 4.271 23 N -0.623 5.623 24 Si 0.804 3.196 25 H -0.190 1.190 26 H -0.224 1.224 27 H -0.218 1.218 28 H 0.083 0.917 29 H 0.080 0.920 30 H 0.125 0.875 31 H 0.114 0.886 32 H 0.091 0.909 33 H 0.129 0.871 34 H 0.205 0.795 35 H 0.207 0.793 36 H 0.114 0.886 37 H 0.104 0.896 38 H 0.111 0.889 39 H 0.129 0.871 40 H 0.084 0.916 41 H 0.061 0.939 42 H 0.047 0.953 43 H 0.052 0.948 44 H 0.089 0.911 45 H 0.049 0.951 46 H 0.087 0.913 47 H 0.052 0.948 48 H 0.026 0.974 49 H 0.208 0.792 50 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -4.474 27.596 13.321 30.968 hybrid contribution 0.169 -1.496 -0.736 1.676 sum -4.305 26.100 12.585 29.294 Atomic orbital electron populations 1.23037 0.76042 1.04123 1.02538 1.86412 1.24211 1.24872 1.86359 1.20029 0.88708 0.85082 0.89383 1.67293 1.40733 0.98765 1.22023 1.21965 0.93920 0.91893 0.88292 1.20942 0.98855 0.91866 1.04562 1.22235 0.92977 1.01348 1.06138 1.22511 1.03159 0.88883 0.88976 1.19966 0.91189 0.95957 1.17345 1.18173 0.81009 0.87201 0.78588 1.90796 1.71025 1.37151 1.45305 1.47638 1.20171 1.11003 1.54439 1.22895 1.00746 0.85875 1.00208 1.21371 0.96505 0.84573 0.96197 1.21023 0.94842 0.95121 0.96840 1.21496 0.95853 0.99430 0.99484 1.21803 1.01913 0.98669 0.95897 1.20731 0.96264 0.91029 0.88298 1.42598 1.48606 1.21851 1.25250 1.19698 1.16309 0.96792 1.04446 0.90669 1.25573 1.00637 1.02798 0.98069 1.69840 1.36005 1.40866 1.15567 0.85049 0.77470 0.79418 0.77685 1.19000 1.22361 1.21781 0.91698 0.91951 0.87518 0.88619 0.90945 0.87142 0.79510 0.79313 0.88606 0.89577 0.88926 0.87100 0.91551 0.93945 0.95305 0.94831 0.91086 0.95135 0.91289 0.94827 0.97363 0.79168 0.94109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.88 10.38 113.37 1.18 2.06 16 2 O -0.31 -10.17 9.09 -70.00 -0.64 -10.81 16 3 C 0.35 9.86 7.48 85.13 0.64 10.50 16 4 N -0.56 -13.06 9.11 -296.06 -2.70 -15.76 16 5 C 0.18 2.68 6.78 42.58 0.29 2.97 16 6 C -0.11 -0.77 10.16 71.24 0.72 -0.05 16 7 C -0.21 -2.19 9.71 22.32 0.22 -1.97 16 8 C -0.01 -0.15 7.53 22.72 0.17 0.02 16 9 C -0.24 -5.99 5.47 -19.91 -0.11 -6.10 16 10 C 0.56 17.02 5.53 86.69 0.48 17.50 16 11 O -0.56 -22.44 14.12 13.23 0.19 -22.26 16 12 N -0.60 -14.40 2.40 -850.57 -2.04 -16.44 16 13 C 0.04 0.58 7.94 127.77 1.01 1.59 16 14 C 0.14 3.78 4.63 86.38 0.40 4.18 16 15 C -0.08 -2.67 0.60 -52.18 -0.03 -2.71 16 16 C -0.10 -4.31 7.06 71.98 0.51 -3.80 16 17 C -0.13 -3.95 7.06 71.98 0.51 -3.44 16 18 C 0.16 6.94 5.15 86.38 0.44 7.39 16 19 N -0.74 -39.46 5.00 -343.46 -1.72 -41.18 16 20 C -0.24 -13.99 9.99 84.03 0.84 -13.15 16 21 H 0.08 4.20 7.83 -2.91 -0.02 4.18 16 22 C -0.08 -4.71 5.50 84.86 0.47 -4.24 16 23 N -0.97 -61.67 13.06 21.65 0.28 -61.39 16 24 Si 0.97 47.78 29.55 68.60 2.03 49.81 16 25 H -0.27 -12.21 7.11 99.48 0.71 -11.51 16 26 H -0.30 -14.60 7.11 99.48 0.71 -13.90 16 27 H -0.29 -14.07 7.11 99.48 0.71 -13.36 16 28 H 0.06 1.39 8.10 -2.39 -0.02 1.37 16 29 H 0.06 1.37 8.10 -2.39 -0.02 1.35 16 30 H 0.11 2.23 8.14 -2.39 -0.02 2.21 16 31 H 0.10 0.51 8.14 -2.39 -0.02 0.49 16 32 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 33 H 0.11 0.17 8.07 -2.38 -0.02 0.15 16 34 H 0.19 0.30 8.06 -2.91 -0.02 0.27 16 35 H 0.19 1.36 5.09 -2.91 -0.01 1.34 16 36 H 0.10 0.63 7.57 -2.38 -0.02 0.61 16 37 H 0.09 1.11 5.81 -2.39 -0.01 1.10 16 38 H 0.09 1.06 4.60 -2.39 -0.01 1.05 16 39 H 0.11 2.33 8.07 -2.38 -0.02 2.32 16 40 H 0.07 2.14 7.35 -2.39 -0.02 2.12 16 41 H 0.04 1.67 6.22 -2.39 -0.01 1.66 16 42 H 0.03 1.32 6.86 -2.39 -0.02 1.30 16 43 H 0.03 1.48 7.86 -2.39 -0.02 1.47 16 44 H 0.07 1.93 8.10 -2.39 -0.02 1.91 16 45 H 0.03 1.18 6.86 -2.39 -0.02 1.16 16 46 H 0.07 1.83 5.89 -2.38 -0.01 1.81 16 47 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16 48 H 0.01 0.38 8.14 -2.39 -0.02 0.36 16 49 H 0.37 21.36 5.36 -92.71 -0.50 20.86 16 50 H 0.25 15.32 8.31 -92.71 -0.77 14.55 16 Total: -1.00 -84.02 389.47 3.60 -80.43 By element: Atomic # 1 Polarization: 26.39 SS G_CDS: 0.46 Total: 26.85 kcal Atomic # 6 Polarization: 3.02 SS G_CDS: 7.73 Total: 10.76 kcal Atomic # 7 Polarization: -128.60 SS G_CDS: -6.17 Total: -134.78 kcal Atomic # 8 Polarization: -32.62 SS G_CDS: -0.45 Total: -33.07 kcal Atomic # 14 Polarization: 47.78 SS G_CDS: 2.03 Total: 49.81 kcal Total: -84.02 3.60 -80.43 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734024779.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.678 kcal (2) G-P(sol) polarization free energy of solvation -84.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.429 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds