Wall clock time and date at job start Tue Mar 31 2020 19:49:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35921 * 117.00115 * 2 1 4 4 C 1.38852 * 120.40125 * 0.02562 * 3 2 1 5 5 N 1.31886 * 120.99597 * 180.27767 * 4 3 2 6 6 C 1.31675 * 121.94204 * 359.47027 * 5 4 3 7 7 C 1.39523 * 120.69338 * 0.52350 * 6 5 4 8 8 C 1.47853 * 120.53251 * 179.76653 * 7 6 5 9 9 O 1.21558 * 119.99783 * 186.07833 * 8 7 6 10 10 N 1.34770 * 120.00297 * 6.07915 * 8 7 6 11 11 C 1.46505 * 120.00262 * 180.02562 * 10 8 7 12 12 H 1.08996 * 109.47233 * 34.99725 * 11 10 8 13 13 C 1.52996 * 109.46882 * 154.99986 * 11 10 8 14 14 N 1.46497 * 109.47346 * 304.99364 * 13 11 10 15 15 C 1.36941 * 120.00100 * 180.02562 * 14 13 11 16 16 H 1.07997 * 119.99958 * 0.02562 * 15 14 13 17 17 C 1.38816 * 119.99703 * 180.02562 * 15 14 13 18 18 N 1.31614 * 120.00047 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 119.99708 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.47327 * 0.02562 * 19 17 15 21 21 H 1.48505 * 109.46872 * 120.00053 * 19 17 15 22 22 H 1.48502 * 109.47084 * 239.99800 * 19 17 15 23 23 C 1.53004 * 109.46835 * 274.99567 * 11 10 8 24 24 C 1.52997 * 109.46832 * 60.00196 * 23 11 10 25 25 C 1.52997 * 109.46884 * 179.97438 * 23 11 10 26 26 C 1.52998 * 109.47025 * 300.00219 * 23 11 10 27 27 C 1.38840 * 120.40978 * 180.02562 * 3 2 1 28 28 C 1.50703 * 120.87955 * 0.02562 * 27 3 2 29 29 H 1.09008 * 109.46602 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47211 * 299.99417 * 1 2 3 31 31 H 1.08996 * 109.47052 * 60.00242 * 1 2 3 32 32 H 1.07998 * 119.50039 * 359.97438 * 4 3 2 33 33 H 1.08010 * 119.65528 * 180.24957 * 6 5 4 34 34 H 0.96999 * 119.99779 * 359.97438 * 10 8 7 35 35 H 1.09000 * 109.47622 * 64.99859 * 13 11 10 36 36 H 1.09009 * 109.47190 * 184.99921 * 13 11 10 37 37 H 0.96996 * 120.00045 * 0.02562 * 14 13 11 38 38 H 0.97008 * 119.99805 * 179.97438 * 18 17 15 39 39 H 1.09003 * 109.47593 * 59.99798 * 24 23 11 40 40 H 1.09003 * 109.46971 * 179.97438 * 24 23 11 41 41 H 1.08999 * 109.47470 * 299.99762 * 24 23 11 42 42 H 1.09000 * 109.47064 * 60.00470 * 25 23 11 43 43 H 1.09003 * 109.46819 * 180.02562 * 25 23 11 44 44 H 1.08996 * 109.47352 * 300.00260 * 25 23 11 45 45 H 1.08998 * 109.47647 * 59.99977 * 26 23 11 46 46 H 1.09008 * 109.46670 * 180.02562 * 26 23 11 47 47 H 1.09000 * 109.47261 * 299.99737 * 26 23 11 48 48 H 1.09003 * 109.47172 * 96.33573 * 28 27 3 49 49 H 1.08995 * 109.47405 * 216.33984 * 28 27 3 50 50 H 1.09001 * 109.47271 * 336.34010 * 28 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2111 0.0000 4 6 1.2980 2.3808 0.0005 5 7 1.8846 3.5621 -0.0049 6 6 3.1952 3.6892 -0.0008 7 6 4.0198 2.5637 -0.0013 8 6 5.4910 2.7105 -0.0018 9 8 6.1997 1.7292 -0.1137 10 7 6.0464 3.9322 0.1218 11 6 7.5042 4.0777 0.1207 12 1 7.9422 3.3432 -0.5551 13 6 7.8757 5.4863 -0.3468 14 7 7.2620 5.7456 -1.6515 15 6 7.4567 6.9505 -2.2725 16 1 8.0630 7.7095 -1.8006 17 6 6.8746 7.1963 -3.5085 18 7 6.1352 6.2715 -4.0833 19 14 7.1407 8.8396 -4.3559 20 1 8.0048 9.6997 -3.5080 21 1 7.7990 8.6187 -5.6687 22 1 5.8305 9.5066 -4.5652 23 6 8.0403 3.8522 1.5359 24 6 7.6687 2.4436 2.0035 25 6 9.5627 4.0035 1.5347 26 6 7.4254 4.8832 2.4845 27 6 3.4320 1.2936 -0.0005 28 6 4.2810 0.0485 -0.0017 29 1 -0.3633 -1.0278 0.0005 30 1 -0.3633 0.5137 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 0.2196 2.3225 0.0005 33 1 3.6365 4.6750 -0.0014 34 1 5.4809 4.7153 0.2107 35 1 7.5136 6.2167 0.3767 36 1 8.9595 5.5667 -0.4328 37 1 6.7177 5.0639 -2.0755 38 1 5.7282 6.4435 -4.9469 39 1 8.1066 1.7090 1.3276 40 1 8.0509 2.2827 3.0115 41 1 6.5841 2.3352 2.0042 42 1 9.8278 5.0069 1.2014 43 1 9.9447 3.8423 2.5428 44 1 10.0004 3.2687 0.8590 45 1 6.3408 4.7750 2.4853 46 1 7.8077 4.7227 3.4927 47 1 7.6902 5.8867 2.1514 48 1 4.5790 -0.1872 -1.0234 49 1 5.1699 0.2142 0.6070 50 1 3.7082 -0.7823 0.4104 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001734562182.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:49:54 Heat of formation + Delta-G solvation = -50.291674 kcal Electronic energy + Delta-G solvation = -30431.577923 eV Core-core repulsion = 26458.776473 eV Total energy + Delta-G solvation = -3972.801450 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.18319 -41.04517 -39.22265 -38.50187 -36.17772 -34.93473 -34.59181 -33.06550 -31.68746 -29.42228 -28.80822 -28.47853 -28.13033 -27.72191 -25.82195 -24.84061 -23.53230 -22.88404 -21.80308 -19.85844 -19.52477 -18.88613 -18.49829 -17.42094 -17.34351 -17.08587 -16.95717 -16.77747 -16.41690 -15.55238 -15.41045 -15.20143 -15.03740 -14.89275 -14.79769 -14.37848 -14.14817 -14.01727 -13.83301 -13.76611 -13.59636 -13.16408 -13.02213 -13.00255 -12.90189 -12.75580 -12.71347 -12.48299 -12.37415 -12.33689 -12.12711 -11.99925 -11.73861 -11.60357 -11.27400 -11.10056 -10.91755 -10.61795 -10.36515 -9.87447 -9.52367 -8.96789 -7.92158 -5.21059 -0.48428 0.09436 1.49037 1.49561 1.59304 1.80632 1.92732 2.36317 2.57588 2.69667 3.27874 3.42602 3.42840 3.63636 3.65709 3.69460 3.84486 4.03279 4.07260 4.13714 4.27582 4.35206 4.37959 4.40434 4.48572 4.55236 4.65533 4.66980 4.75028 4.76769 4.85819 4.87028 4.91756 4.99435 5.05098 5.09861 5.11671 5.15794 5.18640 5.27110 5.33947 5.40329 5.46871 5.53861 5.59333 5.65942 6.13602 6.28445 6.51893 6.73312 7.18991 7.36078 8.10241 8.33414 9.30921 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.009496 B = 0.003950 C = 0.003036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2947.840400 B = 7086.712492 C = 9221.157445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 O -0.316 6.316 3 C 0.068 3.932 4 C 0.042 3.958 5 N -0.472 5.472 6 C 0.099 3.901 7 C -0.161 4.161 8 C 0.564 3.436 9 O -0.547 6.547 10 N -0.697 5.697 11 C 0.160 3.840 12 H 0.061 0.939 13 C 0.143 3.857 14 N -0.743 5.743 15 C -0.238 4.238 16 H 0.079 0.921 17 C -0.073 4.073 18 N -0.968 5.968 19 Si 0.969 3.031 20 H -0.264 1.264 21 H -0.299 1.299 22 H -0.295 1.295 23 C -0.070 4.070 24 C -0.121 4.121 25 C -0.139 4.139 26 C -0.138 4.138 27 C -0.031 4.031 28 C -0.102 4.102 29 H 0.126 0.874 30 H 0.073 0.927 31 H 0.067 0.933 32 H 0.194 0.806 33 H 0.165 0.835 34 H 0.405 0.595 35 H 0.045 0.955 36 H 0.040 0.960 37 H 0.373 0.627 38 H 0.248 0.752 39 H 0.045 0.955 40 H 0.062 0.938 41 H 0.040 0.960 42 H 0.060 0.940 43 H 0.074 0.926 44 H 0.048 0.952 45 H 0.050 0.950 46 H 0.069 0.931 47 H 0.060 0.940 48 H 0.069 0.931 49 H 0.086 0.914 50 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.974 -11.307 15.588 20.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 O -0.229 6.229 3 C 0.020 3.980 4 C -0.115 4.115 5 N -0.181 5.181 6 C -0.060 4.060 7 C -0.166 4.166 8 C 0.351 3.649 9 O -0.427 6.427 10 N -0.347 5.347 11 C 0.055 3.945 12 H 0.079 0.921 13 C 0.017 3.983 14 N -0.386 5.386 15 C -0.370 4.370 16 H 0.097 0.903 17 C -0.265 4.265 18 N -0.619 5.619 19 Si 0.799 3.201 20 H -0.188 1.188 21 H -0.226 1.226 22 H -0.222 1.222 23 C -0.071 4.071 24 C -0.179 4.179 25 C -0.197 4.197 26 C -0.196 4.196 27 C -0.040 4.040 28 C -0.158 4.158 29 H 0.144 0.856 30 H 0.091 0.909 31 H 0.086 0.914 32 H 0.211 0.789 33 H 0.182 0.818 34 H 0.241 0.759 35 H 0.062 0.938 36 H 0.057 0.943 37 H 0.205 0.795 38 H 0.057 0.943 39 H 0.064 0.936 40 H 0.081 0.919 41 H 0.059 0.941 42 H 0.079 0.921 43 H 0.093 0.907 44 H 0.068 0.932 45 H 0.069 0.931 46 H 0.088 0.912 47 H 0.079 0.921 48 H 0.088 0.912 49 H 0.105 0.895 50 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -7.813 -11.275 15.509 20.705 hybrid contribution -0.121 0.416 -1.266 1.338 sum -7.933 -10.859 14.243 19.589 Atomic orbital electron populations 1.23512 0.75637 1.06372 1.02779 1.86084 1.23913 1.24587 1.88297 1.19738 0.91887 0.86921 0.99491 1.23588 1.02132 0.86325 0.99449 1.67575 1.11800 1.27035 1.11711 1.22967 0.88980 0.98423 0.95617 1.20717 0.94416 0.94346 1.07171 1.17958 0.86992 0.83571 0.76372 1.90706 1.63384 1.37989 1.50620 1.45798 1.08036 1.08240 1.72616 1.21156 0.79353 0.97037 0.96960 0.92066 1.21247 0.96693 0.93435 0.86932 1.42550 1.60561 1.15938 1.19523 1.19646 1.24376 0.92938 1.00055 0.90261 1.25502 1.00963 1.01202 0.98838 1.69838 1.39040 1.35206 1.17780 0.85132 0.76948 0.79921 0.78097 1.18799 1.22631 1.22246 1.20853 0.96513 0.96544 0.93208 1.21790 1.00543 0.95075 1.00459 1.21879 0.93157 1.02044 1.02585 1.21887 1.00407 0.98300 0.98967 1.20002 0.91860 0.95747 0.96407 1.20780 0.99086 0.92716 1.03203 0.85614 0.90864 0.91416 0.78910 0.81797 0.75851 0.93767 0.94261 0.79504 0.94289 0.93613 0.91947 0.94136 0.92087 0.90703 0.93237 0.93104 0.91212 0.92063 0.91249 0.89509 0.90239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.11 9.82 113.37 1.11 1.22 16 2 O -0.32 -6.31 9.57 -92.66 -0.89 -7.20 16 3 C 0.07 1.65 6.68 22.56 0.15 1.80 16 4 C 0.04 0.98 10.21 84.83 0.87 1.85 16 5 N -0.47 -13.49 10.34 -194.39 -2.01 -15.50 16 6 C 0.10 2.95 10.69 85.03 0.91 3.86 16 7 C -0.16 -4.99 5.89 -20.01 -0.12 -5.10 16 8 C 0.56 18.81 6.08 86.79 0.53 19.34 16 9 O -0.55 -19.92 10.62 -3.90 -0.04 -19.96 16 10 N -0.70 -22.25 3.59 -445.40 -1.60 -23.85 16 11 C 0.16 5.20 1.69 44.99 0.08 5.28 16 12 H 0.06 2.35 7.58 -2.39 -0.02 2.33 16 13 C 0.14 5.31 5.10 86.38 0.44 5.75 16 14 N -0.74 -36.20 5.43 -343.45 -1.87 -38.07 16 15 C -0.24 -12.86 9.99 84.03 0.84 -12.02 16 16 H 0.08 4.07 7.83 -2.91 -0.02 4.05 16 17 C -0.07 -4.11 5.50 84.86 0.47 -3.65 16 18 N -0.97 -59.12 13.06 21.65 0.28 -58.83 16 19 Si 0.97 45.77 29.55 68.60 2.03 47.80 16 20 H -0.26 -11.58 7.11 99.48 0.71 -10.87 16 21 H -0.30 -14.32 7.11 99.48 0.71 -13.61 16 22 H -0.30 -13.99 7.11 99.48 0.71 -13.28 16 23 C -0.07 -1.78 0.62 -52.18 -0.03 -1.81 16 24 C -0.12 -3.17 6.99 71.98 0.50 -2.67 16 25 C -0.14 -3.21 8.12 71.98 0.58 -2.62 16 26 C -0.14 -3.10 7.97 71.98 0.57 -2.52 16 27 C -0.03 -0.89 5.97 -19.30 -0.12 -1.01 16 28 C -0.10 -2.75 8.70 71.24 0.62 -2.13 16 29 H 0.13 0.72 8.14 -2.38 -0.02 0.70 16 30 H 0.07 0.54 7.67 -2.39 -0.02 0.52 16 31 H 0.07 0.59 7.67 -2.39 -0.02 0.57 16 32 H 0.19 2.93 6.30 -2.91 -0.02 2.91 16 33 H 0.16 4.68 6.46 -2.91 -0.02 4.66 16 34 H 0.41 12.49 6.70 -92.71 -0.62 11.87 16 35 H 0.04 1.55 6.17 -2.39 -0.01 1.53 16 36 H 0.04 1.46 6.71 -2.38 -0.02 1.45 16 37 H 0.37 19.94 7.33 -92.71 -0.68 19.26 16 38 H 0.25 14.83 8.31 -92.70 -0.77 14.06 16 39 H 0.04 1.34 7.53 -2.39 -0.02 1.33 16 40 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 41 H 0.04 1.15 5.77 -2.39 -0.01 1.13 16 42 H 0.06 1.43 6.54 -2.39 -0.02 1.41 16 43 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 44 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 45 H 0.05 1.16 7.60 -2.39 -0.02 1.14 16 46 H 0.07 1.31 8.14 -2.38 -0.02 1.29 16 47 H 0.06 1.40 6.32 -2.39 -0.02 1.38 16 48 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 49 H 0.09 2.55 5.96 -2.39 -0.01 2.53 16 50 H 0.08 1.83 7.44 -2.39 -0.02 1.82 16 Total: -1.00 -68.96 388.28 2.99 -65.98 By element: Atomic # 1 Polarization: 44.39 SS G_CDS: -0.33 Total: 44.07 kcal Atomic # 6 Polarization: -1.84 SS G_CDS: 7.41 Total: 5.57 kcal Atomic # 7 Polarization: -131.06 SS G_CDS: -5.19 Total: -136.25 kcal Atomic # 8 Polarization: -26.23 SS G_CDS: -0.93 Total: -27.16 kcal Atomic # 14 Polarization: 45.77 SS G_CDS: 2.03 Total: 47.80 kcal Total: -68.96 2.99 -65.98 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734562182.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.687 kcal (2) G-P(sol) polarization free energy of solvation -68.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.979 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds