Wall clock time and date at job start Tue Mar 31 2020 19:24:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.34513 * 125.79140 * 2 1 4 4 C 1.41386 * 106.84183 * 180.02562 * 3 2 1 5 5 C 1.34513 * 106.84071 * 0.02562 * 4 3 2 6 6 C 1.50701 * 125.78970 * 180.02562 * 5 4 3 7 7 H 1.08994 * 109.47106 * 359.97438 * 6 5 4 8 8 C 1.53001 * 109.47113 * 119.99807 * 6 5 4 9 9 C 1.50695 * 109.46952 * 239.99551 * 6 5 4 10 10 O 1.21275 * 120.00103 * 0.02562 * 9 6 5 11 11 N 1.34775 * 119.99795 * 179.97438 * 9 6 5 12 12 C 1.46498 * 120.00107 * 180.02562 * 11 9 6 13 13 C 1.53001 * 109.47542 * 179.97438 * 12 11 9 14 14 N 1.46899 * 109.47218 * 179.97438 * 13 12 11 15 15 C 1.46902 * 110.99712 * 170.00213 * 14 13 12 16 16 C 1.53237 * 109.33805 * 172.74361 * 15 14 13 17 17 N 1.47079 * 108.52132 * 53.83315 * 16 15 14 18 18 C 1.36941 * 120.88448 * 128.78817 * 17 16 15 19 19 H 1.07997 * 119.99918 * 206.58402 * 18 17 16 20 20 C 1.38807 * 119.99583 * 26.58782 * 18 17 16 21 21 N 1.31618 * 120.00188 * 17.02141 * 20 18 17 22 22 Si 1.86799 * 119.99686 * 197.01988 * 20 18 17 23 23 H 1.48497 * 109.47556 * 0.02562 * 22 20 18 24 24 H 1.48498 * 109.47149 * 120.00406 * 22 20 18 25 25 H 1.48503 * 109.47120 * 239.99923 * 22 20 18 26 26 C 1.47083 * 118.23330 * 308.81493 * 17 16 15 27 27 C 1.46891 * 110.99901 * 45.70069 * 14 13 12 28 28 O 1.34304 * 125.78758 * 180.35207 * 2 1 3 29 29 H 1.09000 * 109.47519 * 89.99695 * 1 2 3 30 30 H 1.09007 * 109.47243 * 209.99742 * 1 2 3 31 31 H 1.08997 * 109.47046 * 329.99931 * 1 2 3 32 32 H 1.07998 * 126.57941 * 0.02562 * 3 2 1 33 33 H 1.08000 * 126.57873 * 180.02562 * 4 3 2 34 34 H 1.09003 * 109.46926 * 299.99733 * 8 6 5 35 35 H 1.08999 * 109.47595 * 59.99657 * 8 6 5 36 36 H 1.08995 * 109.47082 * 180.02562 * 8 6 5 37 37 H 0.97001 * 120.00420 * 359.97438 * 11 9 6 38 38 H 1.09008 * 109.47306 * 60.00001 * 12 11 9 39 39 H 1.08994 * 109.47165 * 300.00070 * 12 11 9 40 40 H 1.09008 * 109.46529 * 59.99881 * 13 12 11 41 41 H 1.08994 * 109.47237 * 300.00381 * 13 12 11 42 42 H 1.09004 * 109.49329 * 52.78786 * 15 14 13 43 43 H 1.08999 * 109.49244 * 292.70731 * 15 14 13 44 44 H 1.09002 * 109.62613 * 173.53722 * 16 15 14 45 45 H 1.08998 * 109.63440 * 293.92450 * 16 15 14 46 46 H 0.97006 * 119.99914 * 179.97438 * 21 20 18 47 47 H 1.09001 * 109.62421 * 170.89529 * 26 17 16 48 48 H 1.09004 * 109.62775 * 291.46820 * 26 17 16 49 49 H 1.09002 * 109.49547 * 67.29328 * 27 14 13 50 50 H 1.08995 * 109.52035 * 307.22723 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2937 1.0911 0.0000 4 6 3.6309 0.6320 -0.0006 5 6 3.5814 -0.7122 -0.0015 6 6 4.7706 -1.6379 -0.0019 7 1 5.6885 -1.0502 -0.0017 8 6 4.7297 -2.5212 1.2468 9 6 4.7308 -2.5063 -1.2328 10 8 3.8262 -2.3851 -2.0314 11 7 5.7011 -3.4169 -1.4467 12 6 5.6627 -4.2607 -2.6437 13 6 6.8707 -5.1998 -2.6447 14 7 6.8318 -6.0463 -3.8446 15 6 8.0881 -6.7909 -4.0044 16 6 7.9419 -7.7916 -5.1557 17 7 7.4935 -7.0643 -6.3528 18 6 8.1527 -7.1994 -7.5455 19 1 8.1239 -6.4007 -8.2719 20 6 8.8579 -8.3629 -7.8206 21 7 8.6324 -9.4514 -7.1160 22 14 10.1270 -8.3837 -9.1911 23 1 10.1917 -7.0430 -9.8265 24 1 11.4573 -8.7290 -8.6287 25 1 9.7416 -9.3955 -10.2074 26 6 6.3185 -6.1875 -6.2348 27 6 6.5285 -5.2499 -5.0410 28 8 2.2924 -1.0894 -0.0067 29 1 -0.3634 0.0001 -1.0276 30 1 -0.3634 -0.8901 0.5138 31 1 -0.3633 0.8900 0.5138 32 1 1.9666 2.1204 0.0004 33 1 4.5213 1.2433 -0.0004 34 1 4.7585 -1.8930 2.1372 35 1 3.8117 -3.1089 1.2464 36 1 5.5900 -3.1904 1.2468 37 1 6.4252 -3.5131 -0.8086 38 1 5.6917 -3.6312 -3.5332 39 1 4.7450 -4.8487 -2.6445 40 1 6.8421 -5.8293 -1.7552 41 1 7.7882 -4.6115 -2.6441 42 1 8.3128 -7.3273 -3.0825 43 1 8.8972 -6.0954 -4.2274 44 1 8.9036 -8.2649 -5.3537 45 1 7.2077 -8.5518 -4.8891 46 1 9.1249 -10.2646 -7.3086 47 1 6.2068 -5.6003 -7.1464 48 1 5.4256 -6.7915 -6.0734 49 1 7.3593 -4.5759 -5.2497 50 1 5.6223 -4.6685 -4.8714 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001752374671.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:24:23 Heat of formation + Delta-G solvation = 9.898694 kcal Electronic energy + Delta-G solvation = -28648.586719 eV Core-core repulsion = 24678.395320 eV Total energy + Delta-G solvation = -3970.191400 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -42.81997 -39.97132 -38.29314 -35.50066 -34.69249 -33.90116 -33.34370 -31.56777 -31.23102 -30.15863 -28.63277 -26.81848 -26.09377 -24.28094 -23.48681 -22.47658 -21.99715 -21.29464 -20.95139 -19.98997 -19.10648 -17.57095 -17.03086 -16.71541 -16.23081 -15.89887 -15.70440 -15.05824 -14.85836 -14.67926 -14.30751 -14.20952 -13.79741 -13.67600 -13.50229 -13.42637 -13.34016 -13.19202 -12.99168 -12.97042 -12.78154 -12.47793 -12.33705 -11.98801 -11.86478 -11.65715 -11.39978 -11.33849 -11.04159 -10.73871 -10.46405 -10.30362 -10.11741 -10.06196 -9.95892 -9.74706 -9.61363 -9.18130 -8.51267 -8.49014 -7.88277 -6.66653 -5.78116 -3.18999 1.48515 2.35453 2.42209 2.65201 2.97152 3.36884 3.44851 3.47185 4.11886 4.30634 4.46922 4.51271 4.55017 4.59779 4.75975 4.84400 4.90119 5.07876 5.11009 5.16163 5.17747 5.29281 5.39154 5.39769 5.42275 5.49184 5.59470 5.62668 5.75275 5.81304 5.88629 5.89302 5.94325 6.00662 6.13074 6.21535 6.22784 6.32055 6.34253 6.52381 6.68411 6.93787 6.99821 7.21923 7.26408 7.53101 7.61891 7.68456 7.81433 8.01489 8.43523 9.21501 9.84829 10.43347 11.30848 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.028043 B = 0.001835 C = 0.001790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 998.243006 B =15257.794642 C =15641.105086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.010 4.010 3 C -0.216 4.216 4 C -0.203 4.203 5 C 0.010 3.990 6 C -0.028 4.028 7 H 0.125 0.875 8 C -0.145 4.145 9 C 0.514 3.486 10 O -0.523 6.523 11 N -0.726 5.726 12 C 0.115 3.885 13 C 0.045 3.955 14 N -0.528 5.528 15 C 0.037 3.963 16 C 0.177 3.823 17 N -0.596 5.596 18 C -0.250 4.250 19 H 0.066 0.934 20 C 0.000 4.000 21 N -0.904 5.904 22 Si 0.902 3.098 23 H -0.278 1.278 24 H -0.289 1.289 25 H -0.290 1.290 26 C 0.148 3.852 27 C 0.034 3.966 28 O -0.158 6.158 29 H 0.082 0.918 30 H 0.075 0.925 31 H 0.087 0.913 32 H 0.146 0.854 33 H 0.147 0.853 34 H 0.073 0.927 35 H 0.068 0.932 36 H 0.072 0.928 37 H 0.399 0.601 38 H 0.073 0.927 39 H 0.078 0.922 40 H 0.075 0.925 41 H 0.032 0.968 42 H 0.061 0.939 43 H 0.026 0.974 44 H 0.089 0.911 45 H 0.027 0.973 46 H 0.253 0.747 47 H 0.056 0.944 48 H 0.027 0.973 49 H 0.028 0.972 50 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.838 18.522 20.756 29.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.061 4.061 3 C -0.235 4.235 4 C -0.222 4.222 5 C -0.041 4.041 6 C -0.050 4.050 7 H 0.143 0.857 8 C -0.203 4.203 9 C 0.299 3.701 10 O -0.398 6.398 11 N -0.379 5.379 12 C -0.008 4.008 13 C -0.084 4.084 14 N -0.253 5.253 15 C -0.092 4.092 16 C 0.051 3.949 17 N -0.319 5.319 18 C -0.380 4.380 19 H 0.084 0.916 20 C -0.198 4.198 21 N -0.548 5.548 22 Si 0.732 3.268 23 H -0.203 1.203 24 H -0.216 1.216 25 H -0.217 1.217 26 C 0.021 3.979 27 C -0.095 4.095 28 O -0.053 6.053 29 H 0.100 0.900 30 H 0.094 0.906 31 H 0.106 0.894 32 H 0.164 0.836 33 H 0.165 0.835 34 H 0.092 0.908 35 H 0.087 0.913 36 H 0.091 0.909 37 H 0.233 0.767 38 H 0.092 0.908 39 H 0.096 0.904 40 H 0.094 0.906 41 H 0.051 0.949 42 H 0.080 0.920 43 H 0.044 0.956 44 H 0.107 0.893 45 H 0.045 0.955 46 H 0.063 0.937 47 H 0.074 0.926 48 H 0.045 0.955 49 H 0.047 0.953 50 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -9.901 17.784 20.153 28.643 hybrid contribution 1.877 0.686 -0.509 2.062 sum -8.024 18.469 19.644 28.132 Atomic orbital electron populations 1.20304 0.85207 1.03842 1.03676 1.22458 0.94064 0.84215 1.05335 1.21496 0.92574 0.99304 1.10090 1.21498 0.98373 0.93422 1.08932 1.21431 0.82845 0.93360 1.06451 1.19892 0.94602 0.95245 0.95233 0.85728 1.21819 1.03583 0.99436 0.95434 1.20344 0.82059 0.80605 0.87121 1.90767 1.34507 1.68073 1.46471 1.45926 1.27485 1.38470 1.26030 1.21593 0.99748 0.92559 0.86903 1.22252 0.95605 0.94721 0.95832 1.62031 1.35375 1.26190 1.01729 1.22922 0.88275 0.97348 1.00673 1.20861 1.00761 0.90564 0.82676 1.44138 1.29191 1.51679 1.06895 1.19245 1.25520 0.98445 0.94765 0.91579 1.25027 1.01533 0.94714 0.98572 1.70040 1.42077 1.00088 1.42637 0.86224 0.81498 0.77482 0.81584 1.20324 1.21612 1.21707 1.20989 0.90722 0.92105 0.94042 1.22796 0.99198 0.95802 0.91689 1.83972 1.15919 1.34752 1.70694 0.89985 0.90586 0.89438 0.83585 0.83545 0.90809 0.91327 0.90947 0.76677 0.90849 0.90380 0.90625 0.94935 0.92037 0.95565 0.89266 0.95474 0.93680 0.92562 0.95543 0.95338 0.91269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.49 10.42 36.00 0.38 -0.12 16 2 C -0.01 -0.11 7.32 -35.63 -0.26 -0.37 16 3 C -0.22 -2.12 10.81 -39.70 -0.43 -2.55 16 4 C -0.20 -2.04 10.78 -39.70 -0.43 -2.47 16 5 C 0.01 0.11 5.20 -35.62 -0.19 -0.07 16 6 C -0.03 -0.24 3.13 -92.92 -0.29 -0.53 16 7 H 0.12 0.70 8.10 -51.93 -0.42 0.28 16 8 C -0.15 -0.92 9.07 37.16 0.34 -0.58 16 9 C 0.51 6.12 7.15 -10.99 -0.08 6.04 16 10 O -0.52 -8.79 15.79 -1.58 -0.02 -8.82 16 11 N -0.73 -7.25 5.45 -60.30 -0.33 -7.58 16 12 C 0.12 1.46 4.93 -4.04 -0.02 1.44 16 13 C 0.04 0.58 5.38 -3.82 -0.02 0.56 16 14 N -0.53 -9.19 4.78 -234.33 -1.12 -10.31 16 15 C 0.04 0.70 5.58 -3.70 -0.02 0.68 16 16 C 0.18 4.28 5.42 -3.60 -0.02 4.26 16 17 N -0.60 -15.23 3.04 -172.01 -0.52 -15.76 16 18 C -0.25 -6.94 9.63 -15.06 -0.15 -7.09 16 19 H 0.07 1.81 7.88 -52.49 -0.41 1.39 16 20 C 0.00 -0.01 4.93 -17.43 -0.09 -0.09 16 21 N -0.90 -26.33 11.15 55.49 0.62 -25.71 16 22 Si 0.90 21.77 29.59 -169.99 -5.03 16.74 16 23 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 24 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 25 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 26 C 0.15 3.22 6.69 -3.60 -0.02 3.20 16 27 C 0.03 0.62 5.04 -3.71 -0.02 0.61 16 28 O -0.16 -2.02 10.34 -1.45 -0.01 -2.03 16 29 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 30 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 31 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.15 1.08 8.06 -52.49 -0.42 0.65 16 33 H 0.15 1.11 8.06 -52.49 -0.42 0.69 16 34 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 35 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.07 0.31 7.57 -51.93 -0.39 -0.08 16 37 H 0.40 2.65 7.89 -40.82 -0.32 2.33 16 38 H 0.07 1.04 6.18 -51.92 -0.32 0.72 16 39 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 40 H 0.08 0.88 8.14 -51.92 -0.42 0.46 16 41 H 0.03 0.41 8.08 -51.93 -0.42 -0.01 16 42 H 0.06 1.04 8.11 -51.93 -0.42 0.62 16 43 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 44 H 0.09 2.37 6.12 -51.93 -0.32 2.05 16 45 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 46 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 47 H 0.06 1.18 7.95 -51.93 -0.41 0.77 16 48 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 49 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 50 H 0.07 1.12 5.73 -51.93 -0.30 0.83 16 LS Contribution 400.54 15.07 6.04 6.04 Total: -1.00 -34.87 400.54 -10.07 -44.94 By element: Atomic # 1 Polarization: 7.94 SS G_CDS: -8.37 Total: -0.43 kcal Atomic # 6 Polarization: 4.23 SS G_CDS: -1.32 Total: 2.91 kcal Atomic # 7 Polarization: -58.00 SS G_CDS: -1.35 Total: -59.36 kcal Atomic # 8 Polarization: -10.81 SS G_CDS: -0.04 Total: -10.85 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.03 Total: 16.74 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -34.87 -10.07 -44.94 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752374671.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.842 kcal (2) G-P(sol) polarization free energy of solvation -34.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.943 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds