Wall clock time and date at job start Tue Mar 31 2020 19:24:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.34513 * 125.79140 * 2 1 4 4 C 1.41386 * 106.84183 * 180.02562 * 3 2 1 5 5 C 1.34513 * 106.84071 * 0.02562 * 4 3 2 6 6 C 1.50701 * 125.78970 * 180.02562 * 5 4 3 7 7 H 1.08994 * 109.47106 * 359.97438 * 6 5 4 8 8 C 1.53001 * 109.47113 * 119.99807 * 6 5 4 9 9 C 1.50695 * 109.46952 * 239.99551 * 6 5 4 10 10 O 1.21275 * 120.00103 * 0.02562 * 9 6 5 11 11 N 1.34775 * 119.99795 * 179.97438 * 9 6 5 12 12 C 1.46498 * 120.00107 * 180.02562 * 11 9 6 13 13 C 1.53001 * 109.47542 * 179.97438 * 12 11 9 14 14 N 1.46899 * 109.47218 * 179.97438 * 13 12 11 15 15 C 1.46902 * 110.99712 * 170.00213 * 14 13 12 16 16 C 1.53237 * 109.33805 * 172.74361 * 15 14 13 17 17 N 1.47079 * 108.52132 * 53.83315 * 16 15 14 18 18 C 1.36941 * 120.88448 * 128.78817 * 17 16 15 19 19 H 1.07997 * 119.99918 * 206.58402 * 18 17 16 20 20 C 1.38807 * 119.99583 * 26.58782 * 18 17 16 21 21 N 1.31618 * 120.00188 * 17.02141 * 20 18 17 22 22 Si 1.86799 * 119.99686 * 197.01988 * 20 18 17 23 23 H 1.48497 * 109.47556 * 0.02562 * 22 20 18 24 24 H 1.48498 * 109.47149 * 120.00406 * 22 20 18 25 25 H 1.48503 * 109.47120 * 239.99923 * 22 20 18 26 26 C 1.47083 * 118.23330 * 308.81493 * 17 16 15 27 27 C 1.46891 * 110.99901 * 45.70069 * 14 13 12 28 28 O 1.34304 * 125.78758 * 180.35207 * 2 1 3 29 29 H 1.09000 * 109.47519 * 89.99695 * 1 2 3 30 30 H 1.09007 * 109.47243 * 209.99742 * 1 2 3 31 31 H 1.08997 * 109.47046 * 329.99931 * 1 2 3 32 32 H 1.07998 * 126.57941 * 0.02562 * 3 2 1 33 33 H 1.08000 * 126.57873 * 180.02562 * 4 3 2 34 34 H 1.09003 * 109.46926 * 299.99733 * 8 6 5 35 35 H 1.08999 * 109.47595 * 59.99657 * 8 6 5 36 36 H 1.08995 * 109.47082 * 180.02562 * 8 6 5 37 37 H 0.97001 * 120.00420 * 359.97438 * 11 9 6 38 38 H 1.09008 * 109.47306 * 60.00001 * 12 11 9 39 39 H 1.08994 * 109.47165 * 300.00070 * 12 11 9 40 40 H 1.09008 * 109.46529 * 59.99881 * 13 12 11 41 41 H 1.08994 * 109.47237 * 300.00381 * 13 12 11 42 42 H 1.09004 * 109.49329 * 52.78786 * 15 14 13 43 43 H 1.08999 * 109.49244 * 292.70731 * 15 14 13 44 44 H 1.09002 * 109.62613 * 173.53722 * 16 15 14 45 45 H 1.08998 * 109.63440 * 293.92450 * 16 15 14 46 46 H 0.97006 * 119.99914 * 179.97438 * 21 20 18 47 47 H 1.09001 * 109.62421 * 170.89529 * 26 17 16 48 48 H 1.09004 * 109.62775 * 291.46820 * 26 17 16 49 49 H 1.09002 * 109.49547 * 67.29328 * 27 14 13 50 50 H 1.08995 * 109.52035 * 307.22723 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2937 1.0911 0.0000 4 6 3.6309 0.6320 -0.0006 5 6 3.5814 -0.7122 -0.0015 6 6 4.7706 -1.6379 -0.0019 7 1 5.6885 -1.0502 -0.0017 8 6 4.7297 -2.5212 1.2468 9 6 4.7308 -2.5063 -1.2328 10 8 3.8262 -2.3851 -2.0314 11 7 5.7011 -3.4169 -1.4467 12 6 5.6627 -4.2607 -2.6437 13 6 6.8707 -5.1998 -2.6447 14 7 6.8318 -6.0463 -3.8446 15 6 8.0881 -6.7909 -4.0044 16 6 7.9419 -7.7916 -5.1557 17 7 7.4935 -7.0643 -6.3528 18 6 8.1527 -7.1994 -7.5455 19 1 8.1239 -6.4007 -8.2719 20 6 8.8579 -8.3629 -7.8206 21 7 8.6324 -9.4514 -7.1160 22 14 10.1270 -8.3837 -9.1911 23 1 10.1917 -7.0430 -9.8265 24 1 11.4573 -8.7290 -8.6287 25 1 9.7416 -9.3955 -10.2074 26 6 6.3185 -6.1875 -6.2348 27 6 6.5285 -5.2499 -5.0410 28 8 2.2924 -1.0894 -0.0067 29 1 -0.3634 0.0001 -1.0276 30 1 -0.3634 -0.8901 0.5138 31 1 -0.3633 0.8900 0.5138 32 1 1.9666 2.1204 0.0004 33 1 4.5213 1.2433 -0.0004 34 1 4.7585 -1.8930 2.1372 35 1 3.8117 -3.1089 1.2464 36 1 5.5900 -3.1904 1.2468 37 1 6.4252 -3.5131 -0.8086 38 1 5.6917 -3.6312 -3.5332 39 1 4.7450 -4.8487 -2.6445 40 1 6.8421 -5.8293 -1.7552 41 1 7.7882 -4.6115 -2.6441 42 1 8.3128 -7.3273 -3.0825 43 1 8.8972 -6.0954 -4.2274 44 1 8.9036 -8.2649 -5.3537 45 1 7.2077 -8.5518 -4.8891 46 1 9.1249 -10.2646 -7.3086 47 1 6.2068 -5.6003 -7.1464 48 1 5.4256 -6.7915 -6.0734 49 1 7.3593 -4.5759 -5.2497 50 1 5.6223 -4.6685 -4.8714 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001752374671.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:24:22 Heat of formation + Delta-G solvation = -14.204197 kcal Electronic energy + Delta-G solvation = -28649.631899 eV Core-core repulsion = 24678.395320 eV Total energy + Delta-G solvation = -3971.236580 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -43.56415 -40.93508 -39.77993 -36.93015 -35.58137 -35.17738 -34.07451 -33.27141 -32.11330 -31.71911 -30.04463 -27.71979 -27.39909 -25.46979 -24.79916 -24.12446 -22.76085 -22.57885 -21.82116 -20.90250 -20.69812 -18.77085 -18.39712 -17.77160 -17.05934 -16.98776 -16.77342 -16.67990 -16.01023 -15.84035 -15.63643 -15.36108 -15.27818 -15.05720 -14.86052 -14.61104 -14.36837 -14.01146 -13.94977 -13.73184 -13.69840 -13.35256 -13.16952 -13.04467 -13.02104 -12.91739 -12.63635 -12.56384 -12.45914 -12.40481 -12.27582 -12.03768 -11.91933 -11.52270 -11.44406 -10.98265 -10.76928 -10.60608 -10.16631 -9.29806 -9.21196 -8.69877 -7.89046 -5.33787 0.73433 1.45324 1.46797 1.53178 1.57816 1.62942 1.98860 2.10454 2.49774 3.06131 3.26407 3.47077 3.65300 3.71363 3.80875 3.95392 4.00800 4.05275 4.16129 4.23680 4.27864 4.32473 4.42741 4.54839 4.55816 4.61243 4.68037 4.68369 4.73136 4.78177 4.84356 4.85917 4.88371 4.93189 4.94543 5.02517 5.06355 5.16516 5.19384 5.29862 5.32771 5.36168 5.60073 5.66317 5.68583 6.11610 6.20764 6.26728 6.36147 6.47746 7.12197 7.17758 7.82121 8.36472 9.17971 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.028043 B = 0.001835 C = 0.001790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 998.243006 B =15257.794642 C =15641.105086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.033 4.033 3 C -0.226 4.226 4 C -0.210 4.210 5 C -0.015 4.015 6 C -0.022 4.022 7 H 0.161 0.839 8 C -0.141 4.141 9 C 0.511 3.489 10 O -0.580 6.580 11 N -0.709 5.709 12 C 0.125 3.875 13 C 0.054 3.946 14 N -0.541 5.541 15 C 0.054 3.946 16 C 0.182 3.818 17 N -0.614 5.614 18 C -0.264 4.264 19 H 0.066 0.934 20 C -0.052 4.052 21 N -0.935 5.935 22 Si 0.970 3.030 23 H -0.268 1.268 24 H -0.287 1.287 25 H -0.292 1.292 26 C 0.142 3.858 27 C 0.049 3.951 28 O -0.188 6.188 29 H 0.083 0.917 30 H 0.077 0.923 31 H 0.112 0.888 32 H 0.168 0.832 33 H 0.170 0.830 34 H 0.088 0.912 35 H 0.045 0.955 36 H 0.098 0.902 37 H 0.419 0.581 38 H 0.059 0.941 39 H 0.059 0.941 40 H 0.098 0.902 41 H 0.050 0.950 42 H 0.089 0.911 43 H 0.025 0.975 44 H 0.059 0.941 45 H -0.002 1.002 46 H 0.251 0.749 47 H 0.057 0.943 48 H 0.014 0.986 49 H 0.027 0.973 50 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.710 20.508 22.552 31.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.083 4.083 3 C -0.245 4.245 4 C -0.229 4.229 5 C -0.065 4.065 6 C -0.043 4.043 7 H 0.178 0.822 8 C -0.198 4.198 9 C 0.298 3.702 10 O -0.459 6.459 11 N -0.362 5.362 12 C 0.000 4.000 13 C -0.074 4.074 14 N -0.267 5.267 15 C -0.075 4.075 16 C 0.057 3.943 17 N -0.338 5.338 18 C -0.394 4.394 19 H 0.084 0.916 20 C -0.247 4.247 21 N -0.581 5.581 22 Si 0.798 3.202 23 H -0.193 1.193 24 H -0.213 1.213 25 H -0.219 1.219 26 C 0.017 3.983 27 C -0.080 4.080 28 O -0.085 6.085 29 H 0.102 0.898 30 H 0.096 0.904 31 H 0.131 0.869 32 H 0.185 0.815 33 H 0.188 0.812 34 H 0.107 0.893 35 H 0.065 0.935 36 H 0.116 0.884 37 H 0.257 0.743 38 H 0.077 0.923 39 H 0.077 0.923 40 H 0.116 0.884 41 H 0.068 0.932 42 H 0.107 0.893 43 H 0.043 0.957 44 H 0.078 0.922 45 H 0.016 0.984 46 H 0.060 0.940 47 H 0.076 0.924 48 H 0.032 0.968 49 H 0.045 0.955 50 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -8.753 19.795 21.999 30.861 hybrid contribution 1.434 0.090 -1.055 1.783 sum -7.319 19.884 20.943 29.792 Atomic orbital electron populations 1.20454 0.83188 1.05187 1.04145 1.23206 0.95577 0.84116 1.05361 1.21885 0.92660 1.00223 1.09683 1.21901 0.99366 0.93427 1.08160 1.22019 0.82977 0.94459 1.07074 1.20054 0.95106 0.95021 0.94070 0.82215 1.21836 1.03586 0.99493 0.94867 1.21003 0.81163 0.80539 0.87470 1.90745 1.36733 1.69767 1.48622 1.45707 1.27723 1.37335 1.25469 1.21295 0.98805 0.92290 0.87572 1.22248 0.96239 0.94686 0.94259 1.61915 1.34442 1.27480 1.02862 1.22586 0.88969 0.96442 0.99517 1.20660 0.98123 0.91340 0.84221 1.44424 1.30372 1.52213 1.06829 1.19559 1.25764 0.98462 0.95620 0.91624 1.25804 1.03405 0.94349 1.01155 1.70196 1.43068 1.00523 1.44354 0.85176 0.78797 0.77606 0.78661 1.19252 1.21349 1.21941 1.21126 0.89041 0.92063 0.96114 1.22559 1.00086 0.94699 0.90637 1.83956 1.17038 1.36142 1.71360 0.89845 0.90398 0.86939 0.81467 0.81245 0.89281 0.93534 0.88375 0.74260 0.92320 0.92291 0.88360 0.93185 0.89305 0.95705 0.92229 0.98374 0.93991 0.92408 0.96831 0.95511 0.89275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.95 10.42 71.24 0.74 -0.20 16 2 C -0.03 -0.68 7.32 24.83 0.18 -0.50 16 3 C -0.23 -4.20 10.81 22.19 0.24 -3.96 16 4 C -0.21 -3.91 10.78 22.19 0.24 -3.67 16 5 C -0.02 -0.32 5.20 24.83 0.13 -0.19 16 6 C -0.02 -0.32 3.13 -12.29 -0.04 -0.36 16 7 H 0.16 1.18 8.10 -2.39 -0.02 1.16 16 8 C -0.14 -1.42 9.07 71.98 0.65 -0.77 16 9 C 0.51 11.47 7.15 87.66 0.63 12.10 16 10 O -0.58 -19.64 15.79 3.81 0.06 -19.58 16 11 N -0.71 -12.33 5.45 -463.07 -2.52 -14.85 16 12 C 0.12 2.92 4.93 86.38 0.43 3.35 16 13 C 0.05 1.22 5.38 86.30 0.46 1.69 16 14 N -0.54 -17.92 4.78 -895.27 -4.28 -22.20 16 15 C 0.05 1.99 5.58 86.38 0.48 2.47 16 16 C 0.18 8.97 5.42 86.35 0.47 9.44 16 17 N -0.61 -31.98 3.04 -698.12 -2.12 -34.10 16 18 C -0.26 -14.87 9.63 84.03 0.81 -14.06 16 19 H 0.07 3.62 7.88 -2.91 -0.02 3.60 16 20 C -0.05 -2.94 4.93 84.86 0.42 -2.52 16 21 N -0.94 -55.91 11.15 21.65 0.24 -55.67 16 22 Si 0.97 45.25 29.59 68.60 2.03 47.28 16 23 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 24 H -0.29 -13.18 7.11 99.48 0.71 -12.48 16 25 H -0.29 -13.67 7.11 99.48 0.71 -12.96 16 26 C 0.14 6.26 6.69 86.35 0.58 6.84 16 27 C 0.05 1.74 5.04 86.38 0.44 2.18 16 28 O -0.19 -4.88 10.34 4.27 0.04 -4.84 16 29 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 30 H 0.08 0.94 8.14 -2.38 -0.02 0.92 16 31 H 0.11 0.81 8.14 -2.39 -0.02 0.80 16 32 H 0.17 2.18 8.06 -2.91 -0.02 2.15 16 33 H 0.17 2.15 8.06 -2.91 -0.02 2.13 16 34 H 0.09 0.66 8.14 -2.39 -0.02 0.64 16 35 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 36 H 0.10 0.46 7.57 -2.39 -0.02 0.44 16 37 H 0.42 3.88 7.89 -92.71 -0.73 3.14 16 38 H 0.06 1.58 6.18 -2.38 -0.01 1.56 16 39 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 40 H 0.10 1.88 8.14 -2.38 -0.02 1.86 16 41 H 0.05 1.03 8.08 -2.39 -0.02 1.01 16 42 H 0.09 2.79 8.11 -2.38 -0.02 2.77 16 43 H 0.02 0.93 8.14 -2.39 -0.02 0.91 16 44 H 0.06 3.26 6.12 -2.39 -0.01 3.24 16 45 H 0.00 -0.10 8.14 -2.39 -0.02 -0.12 16 46 H 0.25 14.42 8.31 -92.70 -0.77 13.65 16 47 H 0.06 2.46 7.95 -2.39 -0.02 2.44 16 48 H 0.01 0.63 8.14 -2.39 -0.02 0.61 16 49 H 0.03 0.96 8.14 -2.39 -0.02 0.94 16 50 H 0.09 2.80 5.73 -2.39 -0.01 2.79 16 Total: -1.00 -79.36 400.54 0.50 -78.85 By element: Atomic # 1 Polarization: 13.07 SS G_CDS: 0.20 Total: 13.27 kcal Atomic # 6 Polarization: 4.98 SS G_CDS: 6.85 Total: 11.84 kcal Atomic # 7 Polarization: -118.14 SS G_CDS: -8.68 Total: -126.82 kcal Atomic # 8 Polarization: -24.52 SS G_CDS: 0.10 Total: -24.42 kcal Atomic # 14 Polarization: 45.25 SS G_CDS: 2.03 Total: 47.28 kcal Total: -79.36 0.50 -78.85 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752374671.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.646 kcal (2) G-P(sol) polarization free energy of solvation -79.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.850 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds