Wall clock time and date at job start Tue Mar 31 2020 18:30:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.50702 * 109.64209 * 2 1 4 4 O 1.21279 * 120.00204 * 114.88823 * 3 2 1 5 5 N 1.34779 * 120.00175 * 294.88613 * 3 2 1 6 6 C 1.46499 * 120.00364 * 179.97438 * 5 3 2 7 7 H 1.08999 * 110.27178 * 32.90850 * 6 5 3 8 8 C 1.54597 * 110.30922 * 270.71913 * 6 5 3 9 9 C 1.54935 * 102.92232 * 219.12352 * 8 6 5 10 10 N 1.48534 * 103.22684 * 37.41340 * 9 8 6 11 11 C 1.46897 * 111.00198 * 200.28091 * 10 9 8 12 12 C 1.50705 * 109.47011 * 287.39372 * 11 10 9 13 13 O 1.21298 * 120.00096 * 0.02562 * 12 11 10 14 14 N 1.34770 * 120.00319 * 179.97438 * 12 11 10 15 15 C 1.37093 * 120.00471 * 180.02562 * 14 12 11 16 16 H 1.08005 * 119.99822 * 0.02562 * 15 14 12 17 17 C 1.38949 * 120.00256 * 179.97438 * 15 14 12 18 18 N 1.31412 * 120.00031 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 120.00084 * 180.02562 * 17 15 14 20 20 H 1.48491 * 109.47189 * 90.00010 * 19 17 15 21 21 H 1.48499 * 109.46982 * 210.00413 * 19 17 15 22 22 H 1.48498 * 109.46669 * 329.99867 * 19 17 15 23 23 C 1.47902 * 105.82031 * 320.79546 * 10 9 8 24 24 C 1.53023 * 109.64477 * 120.42075 * 2 1 3 25 25 C 1.50065 * 110.14679 * 169.33131 * 24 2 1 26 26 C 1.29432 * 124.08068 * 342.86811 * 25 24 2 27 27 C 1.50069 * 124.07353 * 0.47208 * 26 25 24 28 28 C 1.53022 * 110.14821 * 342.86588 * 27 26 25 29 29 H 1.08998 * 109.47052 * 299.57943 * 1 2 3 30 30 H 1.09005 * 109.47170 * 59.57454 * 1 2 3 31 31 H 1.08992 * 109.47356 * 179.58084 * 1 2 3 32 32 H 0.97001 * 119.99961 * 0.02562 * 5 3 2 33 33 H 1.09003 * 110.72655 * 337.48599 * 8 6 5 34 34 H 1.08998 * 110.72469 * 100.76180 * 8 6 5 35 35 H 1.08999 * 110.66662 * 278.97898 * 9 8 6 36 36 H 1.09003 * 110.80720 * 155.91421 * 9 8 6 37 37 H 1.08998 * 109.47283 * 47.39511 * 11 10 9 38 38 H 1.09002 * 109.47507 * 167.39783 * 11 10 9 39 39 H 0.97003 * 120.00032 * 0.02562 * 14 12 11 40 40 H 0.96995 * 120.00070 * 179.97438 * 18 17 15 41 41 H 1.09000 * 109.91713 * 265.97486 * 23 10 9 42 42 H 1.08998 * 110.08729 * 144.77256 * 23 10 9 43 43 H 1.08997 * 109.35511 * 49.12139 * 24 2 1 44 44 H 1.08993 * 109.24706 * 289.47193 * 24 2 1 45 45 H 1.08002 * 117.96110 * 162.89551 * 25 24 2 46 46 H 1.08004 * 117.96829 * 180.18888 * 26 25 24 47 47 H 1.09005 * 109.35784 * 103.07622 * 27 26 25 48 48 H 1.09004 * 109.36187 * 222.66038 * 27 26 25 49 49 H 1.08994 * 109.64510 * 289.75205 * 28 27 26 50 50 H 1.09000 * 109.64261 * 169.12307 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0365 1.4193 0.0000 4 8 2.6566 1.8419 0.9527 5 7 1.8004 2.2191 -1.0588 6 6 2.2924 3.5991 -1.0586 7 1 3.2340 3.6642 -0.5134 8 6 1.2409 4.5435 -0.4323 9 6 1.3319 5.8053 -1.3268 10 7 1.5535 5.2443 -2.6841 11 6 2.1345 6.2517 -3.5817 12 6 1.0845 7.2723 -3.9380 13 8 -0.0374 7.1708 -3.4881 14 7 1.3921 8.2984 -4.7557 15 6 0.4371 9.2272 -5.0795 16 1 -0.5618 9.1367 -4.6788 17 6 0.7545 10.2854 -5.9221 18 7 1.9700 10.3957 -6.4092 19 14 -0.5467 11.5513 -6.3627 20 1 -0.5174 12.6567 -5.3716 21 1 -0.2711 12.0935 -7.7174 22 1 -1.8859 10.9097 -6.3493 23 6 2.4749 4.1017 -2.5027 24 6 2.0444 -0.7297 1.2428 25 6 3.5220 -0.9654 1.1291 26 6 4.1844 -0.8956 0.0193 27 6 3.5689 -0.5591 -1.3074 28 6 2.0500 -0.7330 -1.2431 29 1 -0.3633 0.5073 0.8937 30 1 -0.3634 0.5204 -0.8862 31 1 -0.3633 -1.0275 -0.0075 32 1 1.3042 1.8813 -1.8207 33 1 0.2454 4.1029 -0.4869 34 1 1.5020 4.7819 0.5988 35 1 2.1733 6.4298 -1.0265 36 1 0.4017 6.3725 -1.2921 37 1 2.9673 6.7464 -3.0820 38 1 2.4921 5.7662 -4.4898 39 1 2.2894 8.3799 -5.1153 40 1 2.1915 11.1342 -6.9978 41 1 3.5040 4.4266 -2.6555 42 1 2.2284 3.3066 -3.2065 43 1 1.5320 -1.6871 1.3375 44 1 1.8421 -0.1229 2.1252 45 1 4.0667 -1.2090 2.0294 46 1 5.2468 -1.0870 0.0506 47 1 3.8038 0.4742 -1.5630 48 1 3.9761 -1.2200 -2.0727 49 1 1.8051 -1.7928 -1.1726 50 1 1.5942 -0.3073 -2.1370 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001752387913.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:30:14 Heat of formation + Delta-G solvation = -57.808709 kcal Electronic energy + Delta-G solvation = -29370.430082 eV Core-core repulsion = 25397.302669 eV Total energy + Delta-G solvation = -3973.127413 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.02683 -39.22705 -37.89198 -37.10067 -34.55361 -33.83296 -33.21631 -31.41579 -31.13293 -30.60199 -28.46802 -26.95924 -26.54031 -24.28958 -23.49894 -23.36750 -21.24595 -20.78959 -20.15950 -19.20659 -18.46504 -17.86048 -16.70723 -16.58235 -16.03819 -15.82429 -15.42884 -15.22128 -14.64173 -14.51679 -14.39662 -14.20868 -13.96606 -13.76993 -13.67203 -13.20776 -12.96172 -12.90898 -12.61465 -12.52458 -12.35829 -12.30111 -12.19882 -11.95649 -11.83586 -11.67803 -11.51312 -11.45883 -11.11940 -10.89348 -10.75944 -10.71317 -10.48589 -10.38845 -10.21143 -9.74233 -9.48846 -9.25626 -9.06242 -8.48392 -8.01109 -7.93627 -6.40901 -3.81599 2.12647 2.56109 3.01827 3.18165 3.26702 3.32605 3.91634 4.01827 4.17740 4.25176 4.30924 4.34953 4.53543 4.76960 4.80477 4.84187 4.98111 5.02940 5.05096 5.13259 5.20004 5.27457 5.30885 5.36004 5.37081 5.39157 5.43429 5.49602 5.55632 5.66645 5.70869 5.75771 5.76649 5.79285 5.80821 5.86992 5.89301 5.98418 6.16795 6.28286 6.39676 6.41208 6.47809 6.75071 7.11031 7.17647 7.41205 7.55906 8.07125 8.14201 8.62956 9.19249 9.55637 10.07706 10.76972 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.030532 B = 0.002010 C = 0.001979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 916.846794 B =13927.569781 C =14144.703299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.081 4.081 3 C 0.529 3.471 4 O -0.536 6.536 5 N -0.719 5.719 6 C 0.137 3.863 7 H 0.093 0.907 8 C -0.131 4.131 9 C 0.041 3.959 10 N -0.489 5.489 11 C 0.036 3.964 12 C 0.446 3.554 13 O -0.577 6.577 14 N -0.566 5.566 15 C -0.297 4.297 16 H 0.103 0.897 17 C 0.021 3.979 18 N -0.903 5.903 19 Si 0.930 3.070 20 H -0.278 1.278 21 H -0.284 1.284 22 H -0.270 1.270 23 C 0.028 3.972 24 C -0.069 4.069 25 C -0.138 4.138 26 C -0.165 4.165 27 C -0.096 4.096 28 C -0.107 4.107 29 H 0.063 0.937 30 H 0.064 0.936 31 H 0.068 0.932 32 H 0.401 0.599 33 H 0.078 0.922 34 H 0.073 0.927 35 H 0.041 0.959 36 H 0.100 0.900 37 H 0.051 0.949 38 H 0.088 0.912 39 H 0.392 0.608 40 H 0.271 0.729 41 H 0.053 0.947 42 H 0.083 0.917 43 H 0.079 0.921 44 H 0.082 0.918 45 H 0.102 0.898 46 H 0.100 0.900 47 H 0.073 0.927 48 H 0.074 0.926 49 H 0.077 0.923 50 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.885 -23.605 10.745 26.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.085 4.085 3 C 0.315 3.685 4 O -0.412 6.412 5 N -0.370 5.370 6 C 0.032 3.968 7 H 0.111 0.889 8 C -0.170 4.170 9 C -0.087 4.087 10 N -0.213 5.213 11 C -0.096 4.096 12 C 0.231 3.769 13 O -0.460 6.460 14 N -0.203 5.203 15 C -0.427 4.427 16 H 0.121 0.879 17 C -0.180 4.180 18 N -0.544 5.544 19 Si 0.757 3.243 20 H -0.205 1.205 21 H -0.210 1.210 22 H -0.194 1.194 23 C -0.101 4.101 24 C -0.106 4.106 25 C -0.156 4.156 26 C -0.183 4.183 27 C -0.133 4.133 28 C -0.145 4.145 29 H 0.082 0.918 30 H 0.083 0.917 31 H 0.087 0.913 32 H 0.236 0.764 33 H 0.097 0.903 34 H 0.091 0.909 35 H 0.059 0.941 36 H 0.119 0.881 37 H 0.069 0.931 38 H 0.106 0.894 39 H 0.225 0.775 40 H 0.081 0.919 41 H 0.071 0.929 42 H 0.101 0.899 43 H 0.097 0.903 44 H 0.100 0.900 45 H 0.120 0.880 46 H 0.118 0.882 47 H 0.091 0.909 48 H 0.093 0.907 49 H 0.095 0.905 50 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 3.178 -23.370 11.355 26.176 hybrid contribution 0.743 0.958 -0.605 1.355 sum 3.921 -22.412 10.749 25.164 Atomic orbital electron populations 1.21842 0.92083 1.02988 1.02968 1.20924 0.97034 0.92474 0.98034 1.20359 0.78947 0.86991 0.82246 1.90684 1.40245 1.75848 1.34378 1.46115 1.57797 1.12482 1.20655 1.21811 0.98084 0.80792 0.96160 0.88893 1.22915 0.99645 0.95534 0.98911 1.23276 1.02639 0.95755 0.86996 1.64487 1.40527 1.06763 1.09556 1.22080 0.95986 0.93796 0.97739 1.19683 0.89294 0.83859 0.84062 1.90509 1.22385 1.76515 1.56631 1.41861 1.13609 1.22534 1.42311 1.19686 0.94194 1.02613 1.26197 0.87946 1.25257 0.97198 0.98675 0.96899 1.69610 1.18816 1.32528 1.33476 0.85861 0.80591 0.80234 0.77628 1.20451 1.20952 1.19421 1.23145 0.95908 0.95589 0.95451 1.20348 0.93479 0.99725 0.97037 1.21893 0.95933 1.00064 0.97667 1.21916 0.99511 1.02299 0.94544 1.20495 0.94747 1.02041 0.95969 1.21698 0.95666 1.01004 0.96147 0.91824 0.91697 0.91273 0.76391 0.90335 0.90868 0.94121 0.88143 0.93094 0.89357 0.77536 0.91911 0.92901 0.89925 0.90265 0.89954 0.88000 0.88170 0.90856 0.90723 0.90478 0.90981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.93 8.45 37.15 0.31 -0.62 16 2 C -0.08 -0.65 0.65 -155.45 -0.10 -0.75 16 3 C 0.53 5.77 4.72 -10.98 -0.05 5.71 16 4 O -0.54 -7.85 14.95 5.56 0.08 -7.76 16 5 N -0.72 -7.12 4.84 -52.49 -0.25 -7.37 16 6 C 0.14 1.60 3.34 -66.58 -0.22 1.38 16 7 H 0.09 1.18 7.56 -51.93 -0.39 0.79 16 8 C -0.13 -1.71 6.78 -24.87 -0.17 -1.88 16 9 C 0.04 0.65 5.94 -1.90 -0.01 0.64 16 10 N -0.49 -7.86 4.91 -231.89 -1.14 -9.00 16 11 C 0.04 0.63 5.19 -4.98 -0.03 0.60 16 12 C 0.45 10.45 7.61 -10.99 -0.08 10.36 16 13 O -0.58 -15.47 14.64 5.54 0.08 -15.39 16 14 N -0.57 -14.30 5.29 -10.96 -0.06 -14.36 16 15 C -0.30 -8.27 9.68 -14.94 -0.14 -8.42 16 16 H 0.10 2.99 7.16 -52.48 -0.38 2.61 16 17 C 0.02 0.57 5.50 -17.47 -0.10 0.47 16 18 N -0.90 -24.56 13.05 55.50 0.72 -23.83 16 19 Si 0.93 21.06 29.55 -169.99 -5.02 16.04 16 20 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 21 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 22 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 23 C 0.03 0.34 6.43 -2.76 -0.02 0.32 16 24 C -0.07 -0.57 4.55 -28.18 -0.13 -0.70 16 25 C -0.14 -1.24 9.06 -35.90 -0.33 -1.57 16 26 C -0.16 -1.46 9.61 -35.90 -0.35 -1.80 16 27 C -0.10 -0.74 5.59 -28.18 -0.16 -0.89 16 28 C -0.11 -0.70 4.73 -26.51 -0.13 -0.83 16 29 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 30 H 0.06 0.40 7.94 -51.93 -0.41 -0.01 16 31 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.40 3.26 7.48 -40.82 -0.31 2.96 16 33 H 0.08 1.05 8.06 -51.93 -0.42 0.63 16 34 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 35 H 0.04 0.62 7.81 -51.93 -0.41 0.21 16 36 H 0.10 1.87 7.10 -51.93 -0.37 1.50 16 37 H 0.05 0.82 7.83 -51.93 -0.41 0.41 16 38 H 0.09 1.39 8.08 -51.93 -0.42 0.97 16 39 H 0.39 9.46 7.90 -40.82 -0.32 9.13 16 40 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 41 H 0.05 0.60 7.77 -51.93 -0.40 0.19 16 42 H 0.08 0.89 7.65 -51.93 -0.40 0.49 16 43 H 0.08 0.51 8.10 -51.93 -0.42 0.08 16 44 H 0.08 0.79 7.67 -51.93 -0.40 0.39 16 45 H 0.10 0.85 8.06 -52.49 -0.42 0.43 16 46 H 0.10 0.82 8.06 -52.48 -0.42 0.39 16 47 H 0.07 0.65 7.36 -51.93 -0.38 0.27 16 48 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 49 H 0.08 0.44 8.12 -51.93 -0.42 0.02 16 50 H 0.07 0.39 7.60 -51.93 -0.39 0.00 16 LS Contribution 394.58 15.07 5.95 5.95 Total: -1.00 -32.83 394.58 -9.65 -42.47 By element: Atomic # 1 Polarization: 19.55 SS G_CDS: -8.32 Total: 11.23 kcal Atomic # 6 Polarization: 3.72 SS G_CDS: -1.69 Total: 2.03 kcal Atomic # 7 Polarization: -53.84 SS G_CDS: -0.73 Total: -54.56 kcal Atomic # 8 Polarization: -23.32 SS G_CDS: 0.16 Total: -23.15 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -32.83 -9.65 -42.47 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752387913.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.336 kcal (2) G-P(sol) polarization free energy of solvation -32.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.473 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds