Wall clock time and date at job start Tue Mar 31 2020 18:30:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.50702 * 109.64209 * 2 1 4 4 O 1.21279 * 120.00204 * 114.88823 * 3 2 1 5 5 N 1.34779 * 120.00175 * 294.88613 * 3 2 1 6 6 C 1.46499 * 120.00364 * 179.97438 * 5 3 2 7 7 H 1.08999 * 110.27178 * 32.90850 * 6 5 3 8 8 C 1.54597 * 110.30922 * 270.71913 * 6 5 3 9 9 C 1.54935 * 102.92232 * 219.12352 * 8 6 5 10 10 N 1.48534 * 103.22684 * 37.41340 * 9 8 6 11 11 C 1.46897 * 111.00198 * 200.28091 * 10 9 8 12 12 C 1.50705 * 109.47011 * 287.39372 * 11 10 9 13 13 O 1.21298 * 120.00096 * 0.02562 * 12 11 10 14 14 N 1.34770 * 120.00319 * 179.97438 * 12 11 10 15 15 C 1.37093 * 120.00471 * 180.02562 * 14 12 11 16 16 H 1.08005 * 119.99822 * 0.02562 * 15 14 12 17 17 C 1.38949 * 120.00256 * 179.97438 * 15 14 12 18 18 N 1.31412 * 120.00031 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 120.00084 * 180.02562 * 17 15 14 20 20 H 1.48491 * 109.47189 * 90.00010 * 19 17 15 21 21 H 1.48499 * 109.46982 * 210.00413 * 19 17 15 22 22 H 1.48498 * 109.46669 * 329.99867 * 19 17 15 23 23 C 1.47902 * 105.82031 * 320.79546 * 10 9 8 24 24 C 1.53023 * 109.64477 * 120.42075 * 2 1 3 25 25 C 1.50065 * 110.14679 * 169.33131 * 24 2 1 26 26 C 1.29432 * 124.08068 * 342.86811 * 25 24 2 27 27 C 1.50069 * 124.07353 * 0.47208 * 26 25 24 28 28 C 1.53022 * 110.14821 * 342.86588 * 27 26 25 29 29 H 1.08998 * 109.47052 * 299.57943 * 1 2 3 30 30 H 1.09005 * 109.47170 * 59.57454 * 1 2 3 31 31 H 1.08992 * 109.47356 * 179.58084 * 1 2 3 32 32 H 0.97001 * 119.99961 * 0.02562 * 5 3 2 33 33 H 1.09003 * 110.72655 * 337.48599 * 8 6 5 34 34 H 1.08998 * 110.72469 * 100.76180 * 8 6 5 35 35 H 1.08999 * 110.66662 * 278.97898 * 9 8 6 36 36 H 1.09003 * 110.80720 * 155.91421 * 9 8 6 37 37 H 1.08998 * 109.47283 * 47.39511 * 11 10 9 38 38 H 1.09002 * 109.47507 * 167.39783 * 11 10 9 39 39 H 0.97003 * 120.00032 * 0.02562 * 14 12 11 40 40 H 0.96995 * 120.00070 * 179.97438 * 18 17 15 41 41 H 1.09000 * 109.91713 * 265.97486 * 23 10 9 42 42 H 1.08998 * 110.08729 * 144.77256 * 23 10 9 43 43 H 1.08997 * 109.35511 * 49.12139 * 24 2 1 44 44 H 1.08993 * 109.24706 * 289.47193 * 24 2 1 45 45 H 1.08002 * 117.96110 * 162.89551 * 25 24 2 46 46 H 1.08004 * 117.96829 * 180.18888 * 26 25 24 47 47 H 1.09005 * 109.35784 * 103.07622 * 27 26 25 48 48 H 1.09004 * 109.36187 * 222.66038 * 27 26 25 49 49 H 1.08994 * 109.64510 * 289.75205 * 28 27 26 50 50 H 1.09000 * 109.64261 * 169.12307 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0365 1.4193 0.0000 4 8 2.6566 1.8419 0.9527 5 7 1.8004 2.2191 -1.0588 6 6 2.2924 3.5991 -1.0586 7 1 3.2340 3.6642 -0.5134 8 6 1.2409 4.5435 -0.4323 9 6 1.3319 5.8053 -1.3268 10 7 1.5535 5.2443 -2.6841 11 6 2.1345 6.2517 -3.5817 12 6 1.0845 7.2723 -3.9380 13 8 -0.0374 7.1708 -3.4881 14 7 1.3921 8.2984 -4.7557 15 6 0.4371 9.2272 -5.0795 16 1 -0.5618 9.1367 -4.6788 17 6 0.7545 10.2854 -5.9221 18 7 1.9700 10.3957 -6.4092 19 14 -0.5467 11.5513 -6.3627 20 1 -0.5174 12.6567 -5.3716 21 1 -0.2711 12.0935 -7.7174 22 1 -1.8859 10.9097 -6.3493 23 6 2.4749 4.1017 -2.5027 24 6 2.0444 -0.7297 1.2428 25 6 3.5220 -0.9654 1.1291 26 6 4.1844 -0.8956 0.0193 27 6 3.5689 -0.5591 -1.3074 28 6 2.0500 -0.7330 -1.2431 29 1 -0.3633 0.5073 0.8937 30 1 -0.3634 0.5204 -0.8862 31 1 -0.3633 -1.0275 -0.0075 32 1 1.3042 1.8813 -1.8207 33 1 0.2454 4.1029 -0.4869 34 1 1.5020 4.7819 0.5988 35 1 2.1733 6.4298 -1.0265 36 1 0.4017 6.3725 -1.2921 37 1 2.9673 6.7464 -3.0820 38 1 2.4921 5.7662 -4.4898 39 1 2.2894 8.3799 -5.1153 40 1 2.1915 11.1342 -6.9978 41 1 3.5040 4.4266 -2.6555 42 1 2.2284 3.3066 -3.2065 43 1 1.5320 -1.6871 1.3375 44 1 1.8421 -0.1229 2.1252 45 1 4.0667 -1.2090 2.0294 46 1 5.2468 -1.0870 0.0506 47 1 3.8038 0.4742 -1.5630 48 1 3.9761 -1.2200 -2.0727 49 1 1.8051 -1.7928 -1.1726 50 1 1.5942 -0.3073 -2.1370 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001752387913.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:30:13 Heat of formation + Delta-G solvation = -80.967240 kcal Electronic energy + Delta-G solvation = -29371.434311 eV Core-core repulsion = 25397.302669 eV Total energy + Delta-G solvation = -3974.131643 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.82091 -40.56719 -39.34876 -38.09106 -36.00123 -35.40517 -33.92061 -33.27431 -32.17697 -31.50721 -29.56323 -28.09659 -27.50946 -26.03394 -24.27367 -24.00437 -22.52180 -21.75581 -21.01010 -20.92392 -19.87608 -19.20269 -17.86529 -17.47330 -17.29062 -16.85579 -16.64758 -16.33663 -16.08959 -15.90543 -15.57826 -15.41503 -15.02297 -14.85292 -14.59472 -14.43991 -14.08677 -13.75510 -13.62375 -13.49406 -13.30130 -13.26741 -13.12550 -12.99228 -12.94907 -12.86315 -12.72704 -12.61890 -12.40294 -12.39240 -12.20029 -12.11492 -11.86532 -11.47237 -11.32949 -11.07165 -10.61014 -10.34326 -10.05918 -9.99006 -9.79047 -9.33743 -8.45436 -5.93743 1.38291 1.41877 1.46552 1.54525 1.72381 2.07798 2.18061 2.29927 2.80952 3.21293 3.36818 3.52587 3.57501 3.70654 3.73778 3.79687 4.10839 4.14077 4.24405 4.26270 4.28938 4.38531 4.41596 4.44327 4.46030 4.53606 4.59176 4.68550 4.74642 4.77574 4.83359 4.88766 4.90293 4.93477 5.03366 5.03891 5.10728 5.13954 5.25940 5.28549 5.32608 5.42033 5.55385 5.77118 5.83035 5.91741 6.08426 6.10651 6.61044 6.62529 7.14792 7.32082 7.58631 8.14798 8.72055 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.030532 B = 0.002010 C = 0.001979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 916.846794 B =13927.569781 C =14144.703299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.077 4.077 3 C 0.527 3.473 4 O -0.577 6.577 5 N -0.709 5.709 6 C 0.146 3.854 7 H 0.086 0.914 8 C -0.121 4.121 9 C 0.042 3.958 10 N -0.507 5.507 11 C 0.048 3.952 12 C 0.443 3.557 13 O -0.615 6.615 14 N -0.576 5.576 15 C -0.330 4.330 16 H 0.078 0.922 17 C -0.015 4.015 18 N -0.921 5.921 19 Si 0.992 3.008 20 H -0.272 1.272 21 H -0.271 1.271 22 H -0.273 1.273 23 C 0.034 3.966 24 C -0.069 4.069 25 C -0.151 4.151 26 C -0.173 4.173 27 C -0.097 4.097 28 C -0.104 4.104 29 H 0.051 0.949 30 H 0.070 0.930 31 H 0.090 0.910 32 H 0.412 0.588 33 H 0.074 0.926 34 H 0.073 0.927 35 H 0.044 0.956 36 H 0.063 0.937 37 H 0.070 0.930 38 H 0.114 0.886 39 H 0.396 0.604 40 H 0.277 0.723 41 H 0.069 0.931 42 H 0.103 0.897 43 H 0.101 0.899 44 H 0.063 0.937 45 H 0.100 0.900 46 H 0.101 0.899 47 H 0.061 0.939 48 H 0.090 0.910 49 H 0.093 0.907 50 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.126 -25.181 9.724 27.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.080 4.080 3 C 0.315 3.685 4 O -0.456 6.456 5 N -0.361 5.361 6 C 0.040 3.960 7 H 0.104 0.896 8 C -0.160 4.160 9 C -0.086 4.086 10 N -0.232 5.232 11 C -0.084 4.084 12 C 0.230 3.770 13 O -0.501 6.501 14 N -0.214 5.214 15 C -0.460 4.460 16 H 0.096 0.904 17 C -0.214 4.214 18 N -0.562 5.562 19 Si 0.816 3.184 20 H -0.198 1.198 21 H -0.195 1.195 22 H -0.198 1.198 23 C -0.094 4.094 24 C -0.107 4.107 25 C -0.169 4.169 26 C -0.191 4.191 27 C -0.134 4.134 28 C -0.141 4.141 29 H 0.070 0.930 30 H 0.089 0.911 31 H 0.109 0.891 32 H 0.250 0.750 33 H 0.093 0.907 34 H 0.092 0.908 35 H 0.062 0.938 36 H 0.082 0.918 37 H 0.088 0.912 38 H 0.132 0.868 39 H 0.230 0.770 40 H 0.086 0.914 41 H 0.087 0.913 42 H 0.121 0.879 43 H 0.119 0.881 44 H 0.081 0.919 45 H 0.118 0.882 46 H 0.119 0.881 47 H 0.079 0.921 48 H 0.108 0.892 49 H 0.111 0.889 50 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 3.432 -24.971 10.311 27.234 hybrid contribution 0.690 1.411 -0.225 1.586 sum 4.122 -23.561 10.087 25.958 Atomic orbital electron populations 1.21860 0.90778 1.04362 1.02698 1.20944 0.97912 0.90402 0.98769 1.20933 0.78014 0.88070 0.81494 1.90669 1.42180 1.76838 1.35916 1.46011 1.57486 1.11627 1.20954 1.21589 0.97188 0.81422 0.95772 0.89556 1.22804 1.00020 0.94700 0.98509 1.23143 1.00909 0.96648 0.87893 1.64416 1.42220 1.07251 1.09292 1.21954 0.94089 0.92899 0.99439 1.20754 0.90032 0.83916 0.82280 1.90485 1.24623 1.77412 1.57581 1.41934 1.13382 1.22961 1.43135 1.19632 0.94066 1.04488 1.27783 0.90399 1.26023 0.99262 0.99901 0.96218 1.69669 1.19918 1.33144 1.33509 0.84943 0.77841 0.77755 0.77899 1.19766 1.19548 1.19781 1.23188 0.95931 0.94400 0.95889 1.20375 0.93310 1.00474 0.96495 1.22047 0.96576 1.00471 0.97846 1.22118 0.99759 1.02041 0.95213 1.20536 0.95707 1.01569 0.95591 1.21741 0.94722 1.01856 0.95800 0.93017 0.91065 0.89124 0.75027 0.90709 0.90808 0.93787 0.91843 0.91192 0.86786 0.77046 0.91365 0.91306 0.87907 0.88064 0.91866 0.88186 0.88101 0.92099 0.89187 0.88876 0.89315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.51 8.45 71.98 0.61 -0.90 16 2 C -0.08 -1.09 0.65 -52.79 -0.03 -1.12 16 3 C 0.53 10.88 4.72 87.66 0.41 11.29 16 4 O -0.58 -16.84 14.95 -3.03 -0.05 -16.88 16 5 N -0.71 -12.74 4.84 -438.38 -2.12 -14.86 16 6 C 0.15 3.20 3.34 45.87 0.15 3.35 16 7 H 0.09 2.08 7.56 -2.39 -0.02 2.06 16 8 C -0.12 -3.12 6.78 31.80 0.22 -2.91 16 9 C 0.04 1.33 5.94 86.65 0.51 1.85 16 10 N -0.51 -15.66 4.91 -887.58 -4.35 -20.01 16 11 C 0.05 1.60 5.19 85.56 0.44 2.05 16 12 C 0.44 20.94 7.61 87.66 0.67 21.61 16 13 O -0.62 -33.92 14.64 -3.08 -0.05 -33.96 16 14 N -0.58 -29.50 5.29 -306.98 -1.62 -31.12 16 15 C -0.33 -18.75 9.68 84.04 0.81 -17.94 16 16 H 0.08 4.73 7.16 -2.91 -0.02 4.71 16 17 C -0.01 -0.78 5.50 84.93 0.47 -0.31 16 18 N -0.92 -49.72 13.05 21.66 0.28 -49.44 16 19 Si 0.99 43.05 29.55 68.60 2.03 45.08 16 20 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 21 H -0.27 -11.11 7.11 99.48 0.71 -10.41 16 22 H -0.27 -11.90 7.11 99.48 0.71 -11.20 16 23 C 0.03 0.73 6.43 86.45 0.56 1.28 16 24 C -0.07 -1.07 4.55 29.66 0.13 -0.94 16 25 C -0.15 -2.63 9.06 27.05 0.24 -2.39 16 26 C -0.17 -2.87 9.61 27.05 0.26 -2.61 16 27 C -0.10 -1.28 5.59 29.66 0.17 -1.12 16 28 C -0.10 -1.04 4.73 30.73 0.15 -0.90 16 29 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 30 H 0.07 0.69 7.94 -2.38 -0.02 0.67 16 31 H 0.09 0.61 8.14 -2.39 -0.02 0.59 16 32 H 0.41 5.58 7.48 -92.71 -0.69 4.89 16 33 H 0.07 1.98 8.06 -2.39 -0.02 1.96 16 34 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 35 H 0.04 1.34 7.81 -2.39 -0.02 1.32 16 36 H 0.06 2.47 7.10 -2.39 -0.02 2.46 16 37 H 0.07 2.12 7.83 -2.39 -0.02 2.10 16 38 H 0.11 3.28 8.08 -2.39 -0.02 3.26 16 39 H 0.40 19.19 7.90 -92.71 -0.73 18.46 16 40 H 0.28 14.00 8.31 -92.71 -0.77 13.23 16 41 H 0.07 1.32 7.77 -2.39 -0.02 1.30 16 42 H 0.10 1.84 7.65 -2.39 -0.02 1.82 16 43 H 0.10 1.08 8.10 -2.39 -0.02 1.06 16 44 H 0.06 1.22 7.67 -2.39 -0.02 1.20 16 45 H 0.10 1.68 8.06 -2.91 -0.02 1.66 16 46 H 0.10 1.57 8.06 -2.91 -0.02 1.55 16 47 H 0.06 0.97 7.36 -2.38 -0.02 0.95 16 48 H 0.09 0.90 8.14 -2.38 -0.02 0.88 16 49 H 0.09 0.70 8.12 -2.39 -0.02 0.68 16 50 H 0.09 0.62 7.60 -2.39 -0.02 0.60 16 Total: -1.00 -72.73 394.58 -0.59 -73.32 By element: Atomic # 1 Polarization: 38.04 SS G_CDS: -0.48 Total: 37.56 kcal Atomic # 6 Polarization: 4.54 SS G_CDS: 5.77 Total: 10.31 kcal Atomic # 7 Polarization: -107.62 SS G_CDS: -7.81 Total: -115.43 kcal Atomic # 8 Polarization: -50.75 SS G_CDS: -0.09 Total: -50.84 kcal Atomic # 14 Polarization: 43.05 SS G_CDS: 2.03 Total: 45.08 kcal Total: -72.73 -0.59 -73.32 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752387913.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.647 kcal (2) G-P(sol) polarization free energy of solvation -72.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.320 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds