Wall clock time and date at job start Tue Mar 31 2020 18:28:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50705 * 109.64160 * 2 1 4 4 O 1.21283 * 119.99880 * 119.99645 * 3 2 1 5 5 N 1.34776 * 119.99806 * 300.00366 * 3 2 1 6 6 C 1.46504 * 119.99479 * 179.97438 * 5 3 2 7 7 C 1.53005 * 109.46715 * 179.97438 * 6 5 3 8 8 C 1.53937 * 113.73184 * 271.72534 * 7 6 5 9 9 N 1.47964 * 86.17923 * 221.91988 * 8 7 6 10 10 C 1.46897 * 110.99672 * 137.58221 * 9 8 7 11 11 C 1.50702 * 109.47266 * 70.63892 * 10 9 8 12 12 O 1.21291 * 119.99894 * 0.02562 * 11 10 9 13 13 N 1.34782 * 120.00222 * 179.97438 * 11 10 9 14 14 C 1.37094 * 120.00033 * 179.97438 * 13 11 10 15 15 H 1.08002 * 119.99883 * 0.02562 * 14 13 11 16 16 C 1.38948 * 119.99805 * 179.97438 * 14 13 11 17 17 N 1.31411 * 120.00273 * 0.02562 * 16 14 13 18 18 Si 1.86804 * 119.99826 * 180.02562 * 16 14 13 19 19 H 1.48493 * 109.46824 * 60.00745 * 18 16 14 20 20 H 1.48496 * 109.46969 * 180.02562 * 18 16 14 21 21 H 1.48501 * 109.47069 * 300.00573 * 18 16 14 22 22 C 1.47960 * 90.75912 * 24.69047 * 9 8 7 23 23 C 1.53021 * 109.64534 * 239.57920 * 2 1 3 24 24 C 1.50062 * 110.14793 * 289.75334 * 23 2 1 25 25 C 1.29449 * 124.07770 * 342.86425 * 24 23 2 26 26 C 1.50069 * 124.07016 * 0.44992 * 25 24 23 27 27 C 1.53004 * 110.15741 * 342.90235 * 26 25 24 28 28 H 1.09002 * 109.47153 * 180.41878 * 1 2 3 29 29 H 1.09001 * 109.46832 * 60.42069 * 1 2 3 30 30 H 1.09004 * 109.47261 * 300.42050 * 1 2 3 31 31 H 0.96993 * 119.99760 * 359.97438 * 5 3 2 32 32 H 1.08994 * 109.46942 * 299.98974 * 6 5 3 33 33 H 1.08997 * 109.47642 * 59.99827 * 6 5 3 34 34 H 1.09001 * 112.93851 * 43.43186 * 7 6 5 35 35 H 1.08998 * 113.75763 * 336.23806 * 8 7 6 36 36 H 1.08999 * 113.76096 * 107.60271 * 8 7 6 37 37 H 1.09003 * 109.47357 * 190.64150 * 10 9 8 38 38 H 1.08998 * 109.47532 * 310.63908 * 10 9 8 39 39 H 0.96996 * 119.99565 * 0.02562 * 13 11 10 40 40 H 0.96998 * 120.00312 * 179.97438 * 17 16 14 41 41 H 1.09005 * 113.75375 * 220.98635 * 22 9 8 42 42 H 1.09002 * 113.76042 * 89.63183 * 22 9 8 43 43 H 1.08996 * 109.35511 * 49.95768 * 23 2 1 44 44 H 1.09005 * 109.35987 * 169.54623 * 23 2 1 45 45 H 1.08003 * 117.96413 * 162.89191 * 24 23 2 46 46 H 1.07999 * 117.96498 * 180.46883 * 25 24 23 47 47 H 1.09004 * 109.35773 * 103.09404 * 26 25 24 48 48 H 1.09003 * 109.35493 * 222.81764 * 26 25 24 49 49 H 1.08998 * 109.63090 * 289.73022 * 27 26 25 50 50 H 1.09005 * 109.65045 * 169.09748 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0365 1.4194 0.0000 4 8 2.7349 1.8140 0.9097 5 7 1.7133 2.2502 -1.0108 6 6 2.2054 3.6301 -1.0104 7 6 1.6980 4.3527 -2.2601 8 6 2.6220 4.2003 -3.4819 9 7 2.3660 5.6363 -3.7303 10 6 3.6019 6.3330 -4.1112 11 6 4.0169 5.9002 -5.4938 12 8 3.3486 5.0912 -6.1022 13 7 5.1301 6.4127 -6.0547 14 6 5.5080 6.0185 -7.3122 15 1 4.9133 5.2976 -7.8536 16 6 6.6553 6.5473 -7.8906 17 7 7.3786 7.4249 -7.2322 18 14 7.1697 6.0107 -9.6044 19 1 6.0937 6.3451 -10.5716 20 1 8.4187 6.7155 -9.9897 21 1 7.4060 4.5447 -9.6140 22 6 2.0569 5.8490 -2.2991 23 6 2.0444 -0.7297 -1.2427 24 6 1.7698 -2.2006 -1.1292 25 6 1.4813 -2.8011 -0.0192 26 6 1.3718 -2.1083 1.3075 27 6 2.0457 -0.7362 1.2431 28 1 -0.3633 -1.0276 0.0075 29 1 -0.3633 0.5073 -0.8938 30 1 -0.3634 0.5204 0.8862 31 1 1.1550 1.9345 -1.7384 32 1 1.8431 4.1448 -0.1206 33 1 3.2953 3.6273 -1.0102 34 1 0.6489 4.1475 -2.4730 35 1 3.6573 3.9769 -3.2243 36 1 2.2234 3.5430 -4.2547 37 1 3.4293 7.4093 -4.1040 38 1 4.3914 6.0870 -3.4012 39 1 5.6643 7.0599 -5.5683 40 1 8.1797 7.7938 -7.6358 41 1 1.2068 6.5093 -2.1269 42 1 2.9270 6.1079 -1.6956 43 1 1.5428 -0.3357 -2.1266 44 1 3.1184 -0.5690 -1.3375 45 1 1.8161 -2.7954 -2.0295 46 1 1.3091 -3.8668 -0.0499 47 1 0.3198 -1.9822 1.5635 48 1 1.8597 -2.7129 2.0721 49 1 3.1261 -0.8618 1.1726 50 1 1.7977 -0.1638 2.1370 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753404784.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:28:31 Heat of formation + Delta-G solvation = -33.900335 kcal Electronic energy + Delta-G solvation = -28699.090753 eV Core-core repulsion = 24727.000085 eV Total energy + Delta-G solvation = -3972.090668 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -40.91603 -40.01868 -38.23221 -37.67333 -34.95284 -33.90337 -32.78343 -31.40057 -31.20181 -30.54425 -27.52908 -27.37274 -25.98408 -24.95725 -23.91734 -23.07920 -22.10804 -20.44885 -19.46760 -19.19013 -17.94154 -17.66594 -17.39735 -16.48381 -16.22107 -15.86434 -15.42958 -15.32662 -15.01079 -14.66738 -14.61594 -14.42492 -14.24360 -13.72295 -13.64883 -13.52718 -13.22344 -13.19221 -12.73737 -12.54908 -12.49787 -12.28954 -12.10979 -12.00077 -11.72304 -11.49603 -11.35219 -11.26017 -11.06058 -11.00126 -10.66238 -10.62194 -10.58254 -10.44792 -10.21762 -9.78420 -9.50257 -9.34418 -9.23248 -8.66385 -8.23725 -7.97187 -6.42230 -3.83220 1.94853 2.46346 2.95017 3.19285 3.25067 3.29299 3.88207 3.98451 4.15550 4.19479 4.24022 4.39040 4.46934 4.64456 4.73707 4.77867 4.91272 4.93786 4.97568 5.11244 5.12462 5.22297 5.22682 5.28673 5.35398 5.41238 5.45366 5.50218 5.55402 5.57391 5.60119 5.64251 5.72283 5.73748 5.77039 5.83500 5.89317 5.97684 6.03769 6.19261 6.25545 6.30700 6.33524 6.59604 6.61429 7.19255 7.30861 7.54100 8.04078 8.04633 8.60603 9.16996 9.53334 10.05002 10.75439 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.015673 B = 0.002066 C = 0.001917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1786.101796 B =13549.236472 C =14599.980595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.078 4.078 3 C 0.523 3.477 4 O -0.541 6.541 5 N -0.724 5.724 6 C 0.128 3.872 7 C -0.134 4.134 8 C 0.026 3.974 9 N -0.453 5.453 10 C 0.010 3.990 11 C 0.443 3.557 12 O -0.580 6.580 13 N -0.564 5.564 14 C -0.299 4.299 15 H 0.102 0.898 16 C 0.022 3.978 17 N -0.902 5.902 18 Si 0.931 3.069 19 H -0.273 1.273 20 H -0.284 1.284 21 H -0.274 1.274 22 C 0.008 3.992 23 C -0.081 4.081 24 C -0.149 4.149 25 C -0.157 4.157 26 C -0.093 4.093 27 C -0.095 4.095 28 H 0.074 0.926 29 H 0.060 0.940 30 H 0.060 0.940 31 H 0.402 0.598 32 H 0.070 0.930 33 H 0.069 0.931 34 H 0.104 0.896 35 H 0.067 0.933 36 H 0.093 0.907 37 H 0.090 0.910 38 H 0.054 0.946 39 H 0.392 0.608 40 H 0.272 0.728 41 H 0.090 0.910 42 H 0.071 0.929 43 H 0.079 0.921 44 H 0.080 0.920 45 H 0.107 0.893 46 H 0.103 0.897 47 H 0.076 0.924 48 H 0.073 0.927 49 H 0.070 0.930 50 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.029 -14.472 17.648 26.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.081 4.081 3 C 0.308 3.692 4 O -0.417 6.417 5 N -0.376 5.376 6 C 0.004 3.996 7 C -0.153 4.153 8 C -0.102 4.102 9 N -0.176 5.176 10 C -0.122 4.122 11 C 0.229 3.771 12 O -0.464 6.464 13 N -0.201 5.201 14 C -0.429 4.429 15 H 0.120 0.880 16 C -0.180 4.180 17 N -0.543 5.543 18 Si 0.758 3.242 19 H -0.199 1.199 20 H -0.210 1.210 21 H -0.199 1.199 22 C -0.121 4.121 23 C -0.118 4.118 24 C -0.167 4.167 25 C -0.175 4.175 26 C -0.130 4.130 27 C -0.133 4.133 28 H 0.092 0.908 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.236 0.764 32 H 0.088 0.912 33 H 0.087 0.913 34 H 0.122 0.878 35 H 0.085 0.915 36 H 0.112 0.888 37 H 0.109 0.891 38 H 0.072 0.928 39 H 0.225 0.775 40 H 0.082 0.918 41 H 0.109 0.891 42 H 0.089 0.911 43 H 0.097 0.903 44 H 0.098 0.902 45 H 0.125 0.875 46 H 0.121 0.879 47 H 0.095 0.905 48 H 0.092 0.908 49 H 0.089 0.911 50 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -13.229 -14.388 17.300 26.102 hybrid contribution 1.204 -0.031 -0.509 1.307 sum -12.025 -14.419 16.791 25.188 Atomic orbital electron populations 1.21917 0.92299 1.03340 1.02358 1.20850 0.97417 0.91693 0.98152 1.20521 0.79874 0.87166 0.81593 1.90698 1.37719 1.77319 1.35977 1.46021 1.53757 1.12494 1.25318 1.21443 0.99327 0.80992 0.97866 1.23342 1.01383 0.96035 0.94546 1.23866 0.98091 0.92378 0.95893 1.68404 1.28736 1.04119 1.16297 1.22463 0.92190 1.00531 0.97026 1.19686 0.83502 0.86097 0.87844 1.90511 1.54693 1.36915 1.64308 1.41869 1.22307 1.39537 1.16371 1.19639 1.07804 1.23599 0.91860 0.88007 1.25267 0.96199 0.96409 1.00092 1.69602 1.16725 1.29401 1.38582 0.85915 0.77819 0.78728 0.81743 1.19873 1.20962 1.19928 1.23964 1.01478 0.95551 0.91144 1.20512 1.01892 0.93019 0.96386 1.21966 1.00866 0.95709 0.98196 1.22062 1.01354 0.99582 0.94529 1.20536 1.01234 0.95600 0.95597 1.21445 1.00656 0.94716 0.96435 0.90759 0.92101 0.92079 0.76365 0.91217 0.91274 0.87755 0.91488 0.88825 0.89139 0.92811 0.77490 0.91806 0.89124 0.91126 0.90252 0.90178 0.87503 0.87884 0.90536 0.90811 0.91127 0.90715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.92 7.73 37.16 0.29 -0.63 16 2 C -0.08 -0.64 0.63 -155.44 -0.10 -0.74 16 3 C 0.52 5.71 6.47 -10.98 -0.07 5.63 16 4 O -0.54 -8.01 15.92 5.56 0.09 -7.92 16 5 N -0.72 -6.76 5.37 -60.29 -0.32 -7.08 16 6 C 0.13 1.31 5.53 -4.04 -0.02 1.29 16 7 C -0.13 -1.42 3.94 -89.69 -0.35 -1.77 16 8 C 0.03 0.39 6.31 -2.76 -0.02 0.37 16 9 N -0.45 -7.34 5.95 -239.73 -1.43 -8.77 16 10 C 0.01 0.18 5.31 -4.98 -0.03 0.15 16 11 C 0.44 10.53 7.59 -10.98 -0.08 10.45 16 12 O -0.58 -15.69 15.13 5.55 0.08 -15.61 16 13 N -0.56 -14.41 5.29 -10.96 -0.06 -14.47 16 14 C -0.30 -8.39 9.68 -14.94 -0.14 -8.53 16 15 H 0.10 2.98 7.16 -52.49 -0.38 2.61 16 16 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 17 N -0.90 -24.65 13.05 55.50 0.72 -23.93 16 18 Si 0.93 21.13 29.55 -169.99 -5.02 16.10 16 19 H -0.27 -6.17 7.11 56.52 0.40 -5.76 16 20 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 21 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 22 C 0.01 0.10 7.54 -2.77 -0.02 0.08 16 23 C -0.08 -0.62 4.71 -28.18 -0.13 -0.75 16 24 C -0.15 -1.06 9.41 -35.90 -0.34 -1.39 16 25 C -0.16 -1.05 9.15 -35.90 -0.33 -1.37 16 26 C -0.09 -0.60 5.48 -28.19 -0.15 -0.75 16 27 C -0.09 -0.80 4.34 -26.52 -0.12 -0.92 16 28 H 0.07 0.44 5.67 -51.93 -0.29 0.14 16 29 H 0.06 0.34 7.59 -51.93 -0.39 -0.05 16 30 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.40 2.94 7.60 -40.82 -0.31 2.63 16 32 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.07 0.82 7.83 -51.93 -0.41 0.41 16 34 H 0.10 1.01 8.14 -51.93 -0.42 0.58 16 35 H 0.07 1.02 7.53 -51.93 -0.39 0.63 16 36 H 0.09 1.51 8.09 -51.93 -0.42 1.09 16 37 H 0.09 1.49 8.14 -51.93 -0.42 1.07 16 38 H 0.05 0.87 7.69 -51.93 -0.40 0.47 16 39 H 0.39 9.58 7.90 -40.82 -0.32 9.26 16 40 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 41 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 42 H 0.07 0.76 7.75 -51.93 -0.40 0.36 16 43 H 0.08 0.52 7.88 -51.93 -0.41 0.11 16 44 H 0.08 0.71 8.10 -51.93 -0.42 0.29 16 45 H 0.11 0.67 8.06 -52.48 -0.42 0.25 16 46 H 0.10 0.58 8.06 -52.49 -0.42 0.15 16 47 H 0.08 0.43 6.91 -51.93 -0.36 0.07 16 48 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 49 H 0.07 0.69 8.12 -51.93 -0.42 0.27 16 50 H 0.07 0.69 7.91 -51.93 -0.41 0.28 16 LS Contribution 397.90 15.07 6.00 6.00 Total: -1.00 -33.47 397.90 -9.91 -43.38 By element: Atomic # 1 Polarization: 18.96 SS G_CDS: -8.26 Total: 10.70 kcal Atomic # 6 Polarization: 3.31 SS G_CDS: -1.72 Total: 1.59 kcal Atomic # 7 Polarization: -53.17 SS G_CDS: -1.08 Total: -54.25 kcal Atomic # 8 Polarization: -23.70 SS G_CDS: 0.17 Total: -23.53 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -33.47 -9.91 -43.38 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753404784.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.478 kcal (2) G-P(sol) polarization free energy of solvation -33.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.378 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds