Wall clock time and date at job start Tue Mar 31 2020 18:28:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50705 * 109.64160 * 2 1 4 4 O 1.21283 * 119.99880 * 119.99645 * 3 2 1 5 5 N 1.34776 * 119.99806 * 300.00366 * 3 2 1 6 6 C 1.46504 * 119.99479 * 179.97438 * 5 3 2 7 7 C 1.53005 * 109.46715 * 179.97438 * 6 5 3 8 8 C 1.53937 * 113.73184 * 271.72534 * 7 6 5 9 9 N 1.47964 * 86.17923 * 221.91988 * 8 7 6 10 10 C 1.46897 * 110.99672 * 137.58221 * 9 8 7 11 11 C 1.50702 * 109.47266 * 70.63892 * 10 9 8 12 12 O 1.21291 * 119.99894 * 0.02562 * 11 10 9 13 13 N 1.34782 * 120.00222 * 179.97438 * 11 10 9 14 14 C 1.37094 * 120.00033 * 179.97438 * 13 11 10 15 15 H 1.08002 * 119.99883 * 0.02562 * 14 13 11 16 16 C 1.38948 * 119.99805 * 179.97438 * 14 13 11 17 17 N 1.31411 * 120.00273 * 0.02562 * 16 14 13 18 18 Si 1.86804 * 119.99826 * 180.02562 * 16 14 13 19 19 H 1.48493 * 109.46824 * 60.00745 * 18 16 14 20 20 H 1.48496 * 109.46969 * 180.02562 * 18 16 14 21 21 H 1.48501 * 109.47069 * 300.00573 * 18 16 14 22 22 C 1.47960 * 90.75912 * 24.69047 * 9 8 7 23 23 C 1.53021 * 109.64534 * 239.57920 * 2 1 3 24 24 C 1.50062 * 110.14793 * 289.75334 * 23 2 1 25 25 C 1.29449 * 124.07770 * 342.86425 * 24 23 2 26 26 C 1.50069 * 124.07016 * 0.44992 * 25 24 23 27 27 C 1.53004 * 110.15741 * 342.90235 * 26 25 24 28 28 H 1.09002 * 109.47153 * 180.41878 * 1 2 3 29 29 H 1.09001 * 109.46832 * 60.42069 * 1 2 3 30 30 H 1.09004 * 109.47261 * 300.42050 * 1 2 3 31 31 H 0.96993 * 119.99760 * 359.97438 * 5 3 2 32 32 H 1.08994 * 109.46942 * 299.98974 * 6 5 3 33 33 H 1.08997 * 109.47642 * 59.99827 * 6 5 3 34 34 H 1.09001 * 112.93851 * 43.43186 * 7 6 5 35 35 H 1.08998 * 113.75763 * 336.23806 * 8 7 6 36 36 H 1.08999 * 113.76096 * 107.60271 * 8 7 6 37 37 H 1.09003 * 109.47357 * 190.64150 * 10 9 8 38 38 H 1.08998 * 109.47532 * 310.63908 * 10 9 8 39 39 H 0.96996 * 119.99565 * 0.02562 * 13 11 10 40 40 H 0.96998 * 120.00312 * 179.97438 * 17 16 14 41 41 H 1.09005 * 113.75375 * 220.98635 * 22 9 8 42 42 H 1.09002 * 113.76042 * 89.63183 * 22 9 8 43 43 H 1.08996 * 109.35511 * 49.95768 * 23 2 1 44 44 H 1.09005 * 109.35987 * 169.54623 * 23 2 1 45 45 H 1.08003 * 117.96413 * 162.89191 * 24 23 2 46 46 H 1.07999 * 117.96498 * 180.46883 * 25 24 23 47 47 H 1.09004 * 109.35773 * 103.09404 * 26 25 24 48 48 H 1.09003 * 109.35493 * 222.81764 * 26 25 24 49 49 H 1.08998 * 109.63090 * 289.73022 * 27 26 25 50 50 H 1.09005 * 109.65045 * 169.09748 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0365 1.4194 0.0000 4 8 2.7349 1.8140 0.9097 5 7 1.7133 2.2502 -1.0108 6 6 2.2054 3.6301 -1.0104 7 6 1.6980 4.3527 -2.2601 8 6 2.6220 4.2003 -3.4819 9 7 2.3660 5.6363 -3.7303 10 6 3.6019 6.3330 -4.1112 11 6 4.0169 5.9002 -5.4938 12 8 3.3486 5.0912 -6.1022 13 7 5.1301 6.4127 -6.0547 14 6 5.5080 6.0185 -7.3122 15 1 4.9133 5.2976 -7.8536 16 6 6.6553 6.5473 -7.8906 17 7 7.3786 7.4249 -7.2322 18 14 7.1697 6.0107 -9.6044 19 1 6.0937 6.3451 -10.5716 20 1 8.4187 6.7155 -9.9897 21 1 7.4060 4.5447 -9.6140 22 6 2.0569 5.8490 -2.2991 23 6 2.0444 -0.7297 -1.2427 24 6 1.7698 -2.2006 -1.1292 25 6 1.4813 -2.8011 -0.0192 26 6 1.3718 -2.1083 1.3075 27 6 2.0457 -0.7362 1.2431 28 1 -0.3633 -1.0276 0.0075 29 1 -0.3633 0.5073 -0.8938 30 1 -0.3634 0.5204 0.8862 31 1 1.1550 1.9345 -1.7384 32 1 1.8431 4.1448 -0.1206 33 1 3.2953 3.6273 -1.0102 34 1 0.6489 4.1475 -2.4730 35 1 3.6573 3.9769 -3.2243 36 1 2.2234 3.5430 -4.2547 37 1 3.4293 7.4093 -4.1040 38 1 4.3914 6.0870 -3.4012 39 1 5.6643 7.0599 -5.5683 40 1 8.1797 7.7938 -7.6358 41 1 1.2068 6.5093 -2.1269 42 1 2.9270 6.1079 -1.6956 43 1 1.5428 -0.3357 -2.1266 44 1 3.1184 -0.5690 -1.3375 45 1 1.8161 -2.7954 -2.0295 46 1 1.3091 -3.8668 -0.0499 47 1 0.3198 -1.9822 1.5635 48 1 1.8597 -2.7129 2.0721 49 1 3.1261 -0.8618 1.1726 50 1 1.7977 -0.1638 2.1370 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753404784.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:28:30 Heat of formation + Delta-G solvation = -58.599903 kcal Electronic energy + Delta-G solvation = -28700.161807 eV Core-core repulsion = 24727.000085 eV Total energy + Delta-G solvation = -3973.161722 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -41.74666 -41.16999 -39.60176 -38.87475 -36.06928 -35.78279 -33.48144 -33.28947 -32.08220 -31.57127 -28.65009 -28.07314 -27.07286 -26.71000 -24.68258 -24.08972 -23.02547 -21.32891 -20.99488 -20.36532 -19.90234 -18.47690 -18.00535 -17.86025 -17.39860 -16.83336 -16.60436 -16.47846 -16.38473 -15.95687 -15.73114 -15.49343 -15.25542 -15.07995 -14.86278 -14.41640 -14.25462 -13.96487 -13.82479 -13.63871 -13.54036 -13.35640 -13.16239 -13.05988 -12.86063 -12.79804 -12.59674 -12.46157 -12.33898 -12.14334 -11.91837 -11.76109 -11.66897 -11.62011 -11.50042 -11.23011 -10.64060 -10.34806 -10.11802 -10.03822 -9.87067 -9.68751 -8.48310 -5.97389 1.38149 1.39894 1.42370 1.51084 1.60602 2.02675 2.14682 2.27412 2.81628 3.17956 3.25503 3.43355 3.53129 3.62256 3.69269 3.82119 4.08419 4.18507 4.20477 4.21896 4.29750 4.36409 4.39320 4.40842 4.49235 4.51106 4.55478 4.62631 4.67658 4.69713 4.72239 4.84489 4.89019 4.91320 4.93877 5.04058 5.07508 5.18088 5.22628 5.27441 5.37447 5.39610 5.40524 5.46630 5.78730 5.88785 6.06630 6.06952 6.51845 6.57854 7.10318 7.21420 7.53517 8.08965 8.68892 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.015673 B = 0.002066 C = 0.001917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1786.101796 B =13549.236472 C =14599.980595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.073 4.073 3 C 0.519 3.481 4 O -0.584 6.584 5 N -0.715 5.715 6 C 0.134 3.866 7 C -0.104 4.104 8 C 0.019 3.981 9 N -0.481 5.481 10 C 0.022 3.978 11 C 0.440 3.560 12 O -0.617 6.617 13 N -0.575 5.575 14 C -0.334 4.334 15 H 0.079 0.921 16 C -0.014 4.014 17 N -0.921 5.921 18 Si 0.994 3.006 19 H -0.271 1.271 20 H -0.270 1.270 21 H -0.271 1.271 22 C 0.014 3.986 23 C -0.080 4.080 24 C -0.160 4.160 25 C -0.155 4.155 26 C -0.090 4.090 27 C -0.095 4.095 28 H 0.084 0.916 29 H 0.072 0.928 30 H 0.059 0.941 31 H 0.413 0.587 32 H 0.078 0.922 33 H 0.053 0.947 34 H 0.122 0.878 35 H 0.056 0.944 36 H 0.071 0.929 37 H 0.109 0.891 38 H 0.073 0.927 39 H 0.396 0.604 40 H 0.278 0.722 41 H 0.111 0.889 42 H 0.084 0.916 43 H 0.091 0.909 44 H 0.062 0.938 45 H 0.116 0.884 46 H 0.118 0.882 47 H 0.091 0.909 48 H 0.081 0.919 49 H 0.050 0.950 50 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.281 -14.900 18.165 27.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.076 4.076 3 C 0.307 3.693 4 O -0.464 6.464 5 N -0.367 5.367 6 C 0.009 3.991 7 C -0.123 4.123 8 C -0.110 4.110 9 N -0.203 5.203 10 C -0.110 4.110 11 C 0.227 3.773 12 O -0.503 6.503 13 N -0.212 5.212 14 C -0.463 4.463 15 H 0.097 0.903 16 C -0.214 4.214 17 N -0.562 5.562 18 Si 0.817 3.183 19 H -0.196 1.196 20 H -0.195 1.195 21 H -0.197 1.197 22 C -0.114 4.114 23 C -0.117 4.117 24 C -0.178 4.178 25 C -0.173 4.173 26 C -0.126 4.126 27 C -0.133 4.133 28 H 0.103 0.897 29 H 0.091 0.909 30 H 0.078 0.922 31 H 0.250 0.750 32 H 0.096 0.904 33 H 0.071 0.929 34 H 0.140 0.860 35 H 0.074 0.926 36 H 0.090 0.910 37 H 0.127 0.873 38 H 0.091 0.909 39 H 0.229 0.771 40 H 0.087 0.913 41 H 0.130 0.870 42 H 0.102 0.898 43 H 0.109 0.891 44 H 0.080 0.920 45 H 0.134 0.866 46 H 0.136 0.864 47 H 0.109 0.891 48 H 0.100 0.900 49 H 0.068 0.932 50 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -14.499 -14.806 17.818 27.330 hybrid contribution 1.578 0.101 -0.631 1.703 sum -12.921 -14.704 17.187 26.049 Atomic orbital electron populations 1.21917 0.90471 1.04206 1.02925 1.20844 0.98721 0.89794 0.98271 1.21034 0.79083 0.88196 0.81009 1.90676 1.39759 1.78279 1.37716 1.45962 1.53324 1.12110 1.25269 1.21320 0.98404 0.81484 0.97853 1.23136 1.01229 0.95423 0.92493 1.23831 0.98423 0.91531 0.97245 1.68407 1.27688 1.04599 1.19640 1.22356 0.93719 1.01587 0.93294 1.20753 0.82182 0.84682 0.89668 1.90478 1.55566 1.38339 1.65967 1.41958 1.23168 1.40071 1.16031 1.19616 1.08783 1.24568 0.93347 0.90315 1.26067 0.95611 0.96086 1.03649 1.69666 1.16926 1.29634 1.39930 0.84982 0.77790 0.78432 0.77103 1.19637 1.19462 1.19668 1.24086 1.02680 0.96415 0.88240 1.20504 1.00893 0.93825 0.96524 1.22018 1.01670 0.95236 0.98899 1.22230 1.00549 1.00328 0.94207 1.20547 1.01873 0.94249 0.95966 1.21420 0.99675 0.96046 0.96206 0.89718 0.90884 0.92198 0.74999 0.90427 0.92908 0.85988 0.92580 0.90996 0.87347 0.90900 0.77078 0.91280 0.87031 0.89834 0.89087 0.91989 0.86642 0.86401 0.89121 0.90004 0.93159 0.91783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.52 7.73 71.98 0.56 -0.96 16 2 C -0.07 -1.15 0.63 -52.79 -0.03 -1.19 16 3 C 0.52 11.21 6.47 87.66 0.57 11.78 16 4 O -0.58 -17.64 15.92 -3.04 -0.05 -17.69 16 5 N -0.72 -12.60 5.37 -463.05 -2.48 -15.09 16 6 C 0.13 2.56 5.53 86.38 0.48 3.04 16 7 C -0.10 -2.00 3.94 -10.15 -0.04 -2.04 16 8 C 0.02 0.54 6.31 86.41 0.55 1.09 16 9 N -0.48 -15.00 5.95 -912.37 -5.43 -20.42 16 10 C 0.02 0.77 5.31 85.56 0.45 1.22 16 11 C 0.44 21.23 7.59 87.66 0.67 21.90 16 12 O -0.62 -34.33 15.13 -3.06 -0.05 -34.38 16 13 N -0.57 -29.98 5.29 -306.98 -1.62 -31.60 16 14 C -0.33 -19.15 9.68 84.04 0.81 -18.33 16 15 H 0.08 4.80 7.16 -2.91 -0.02 4.77 16 16 C -0.01 -0.78 5.50 84.93 0.47 -0.31 16 17 N -0.92 -50.20 13.05 21.66 0.28 -49.92 16 18 Si 0.99 43.23 29.55 68.60 2.03 45.26 16 19 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 20 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 21 H -0.27 -11.64 7.11 99.48 0.71 -10.94 16 22 C 0.01 0.30 7.54 86.40 0.65 0.95 16 23 C -0.08 -1.18 4.71 29.66 0.14 -1.04 16 24 C -0.16 -2.05 9.41 27.03 0.25 -1.80 16 25 C -0.16 -1.78 9.15 27.03 0.25 -1.54 16 26 C -0.09 -1.03 5.48 29.65 0.16 -0.87 16 27 C -0.10 -1.62 4.34 30.73 0.13 -1.48 16 28 H 0.08 0.78 5.67 -2.39 -0.01 0.77 16 29 H 0.07 0.63 7.59 -2.39 -0.02 0.61 16 30 H 0.06 0.69 8.14 -2.38 -0.02 0.67 16 31 H 0.41 5.38 7.60 -92.71 -0.70 4.67 16 32 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 33 H 0.05 1.22 7.83 -2.39 -0.02 1.20 16 34 H 0.12 2.00 8.14 -2.39 -0.02 1.98 16 35 H 0.06 1.73 7.53 -2.39 -0.02 1.72 16 36 H 0.07 2.38 8.09 -2.39 -0.02 2.36 16 37 H 0.11 3.39 8.14 -2.39 -0.02 3.37 16 38 H 0.07 2.26 7.69 -2.39 -0.02 2.24 16 39 H 0.40 19.63 7.90 -92.71 -0.73 18.90 16 40 H 0.28 14.20 8.31 -92.71 -0.77 13.43 16 41 H 0.11 1.90 8.14 -2.38 -0.02 1.88 16 42 H 0.08 1.55 7.75 -2.39 -0.02 1.54 16 43 H 0.09 1.08 7.88 -2.39 -0.02 1.07 16 44 H 0.06 1.13 8.10 -2.38 -0.02 1.11 16 45 H 0.12 1.27 8.06 -2.91 -0.02 1.25 16 46 H 0.12 1.03 8.06 -2.91 -0.02 1.01 16 47 H 0.09 0.81 6.91 -2.39 -0.02 0.79 16 48 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 49 H 0.05 1.03 8.12 -2.39 -0.02 1.01 16 50 H 0.06 1.20 7.91 -2.38 -0.02 1.18 16 Total: -1.00 -74.15 397.90 -1.74 -75.89 By element: Atomic # 1 Polarization: 38.02 SS G_CDS: -0.49 Total: 37.53 kcal Atomic # 6 Polarization: 4.35 SS G_CDS: 6.06 Total: 10.42 kcal Atomic # 7 Polarization: -107.78 SS G_CDS: -9.25 Total: -117.03 kcal Atomic # 8 Polarization: -51.98 SS G_CDS: -0.09 Total: -52.07 kcal Atomic # 14 Polarization: 43.23 SS G_CDS: 2.03 Total: 45.26 kcal Total: -74.15 -1.74 -75.89 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753404784.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.293 kcal (2) G-P(sol) polarization free energy of solvation -74.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.893 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds