Wall clock time and date at job start Tue Mar 31 2020 19:36:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17393 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 C 1.52997 * 109.47168 * 10.26207 * 3 2 1 5 5 C 1.52996 * 109.47131 * 180.02562 * 4 3 2 6 6 C 1.50698 * 109.47188 * 180.02562 * 5 4 3 7 7 O 1.21282 * 120.00025 * 359.97438 * 6 5 4 8 8 N 1.34776 * 120.00035 * 180.02562 * 6 5 4 9 9 C 1.47427 * 125.64826 * 359.68469 * 8 6 5 10 10 C 1.55134 * 104.72150 * 155.82107 * 9 8 6 11 11 C 1.55157 * 101.48532 * 37.29614 * 10 9 8 12 12 C 1.53003 * 110.72151 * 82.69567 * 11 10 9 13 13 C 1.53000 * 110.87196 * 205.89890 * 11 10 9 14 14 N 1.46909 * 109.47217 * 293.61218 * 13 11 10 15 15 C 1.46896 * 111.00243 * 179.97438 * 14 13 11 16 16 C 1.50692 * 109.47316 * 179.97438 * 15 14 13 17 17 O 1.21298 * 119.99800 * 359.97438 * 16 15 14 18 18 N 1.34775 * 120.00216 * 179.97438 * 16 15 14 19 19 C 1.37103 * 119.99868 * 179.97438 * 18 16 15 20 20 H 1.07991 * 120.00125 * 359.97438 * 19 18 16 21 21 C 1.38948 * 119.99557 * 180.02562 * 19 18 16 22 22 N 1.31414 * 120.00361 * 359.97438 * 21 19 18 23 23 Si 1.86802 * 119.99991 * 180.02562 * 21 19 18 24 24 H 1.48504 * 109.47067 * 89.99401 * 23 21 19 25 25 H 1.48496 * 109.47445 * 209.99889 * 23 21 19 26 26 H 1.48503 * 109.47064 * 329.99856 * 23 21 19 27 27 C 1.47020 * 125.64880 * 179.97438 * 8 6 5 28 28 H 4.44645 * 5.63342 * 179.97438 * 4 1 2 29 29 H 1.09001 * 109.47046 * 130.25833 * 3 2 1 30 30 H 1.08996 * 109.47366 * 250.26237 * 3 2 1 31 31 H 1.09001 * 109.47289 * 300.00032 * 4 3 2 32 32 H 1.09004 * 109.47261 * 59.99776 * 4 3 2 33 33 H 1.09001 * 109.46997 * 299.99574 * 5 4 3 34 34 H 1.08996 * 109.47452 * 60.00000 * 5 4 3 35 35 H 1.09001 * 110.36807 * 274.74690 * 9 8 6 36 36 H 1.08993 * 110.36664 * 37.07238 * 9 8 6 37 37 H 1.09004 * 111.19328 * 279.19228 * 10 9 8 38 38 H 1.08998 * 110.90473 * 155.27511 * 10 9 8 39 39 H 1.08995 * 109.46641 * 306.48050 * 12 11 10 40 40 H 1.09002 * 109.46890 * 66.47555 * 12 11 10 41 41 H 1.08990 * 109.47143 * 186.47268 * 12 11 10 42 42 H 1.09001 * 109.47366 * 53.60687 * 13 11 10 43 43 H 1.08997 * 109.47372 * 173.60948 * 13 11 10 44 44 H 1.00900 * 110.99593 * 303.95724 * 14 13 11 45 45 H 1.09000 * 109.47317 * 300.00102 * 15 14 13 46 46 H 1.09005 * 109.47004 * 59.99489 * 15 14 13 47 47 H 0.96996 * 120.00200 * 0.02562 * 18 16 15 48 48 H 0.96997 * 119.99622 * 180.02562 * 22 21 19 49 49 H 1.09007 * 109.88253 * 300.43427 * 27 8 6 50 50 H 1.08993 * 109.88781 * 61.44788 * 27 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1566 -1.4185 -0.2570 5 6 4.6866 -1.4179 -0.2563 6 6 5.1896 -2.8157 -0.5101 7 8 4.4019 -3.7230 -0.6747 8 7 6.5147 -3.0575 -0.5530 9 6 7.5779 -2.0517 -0.3760 10 6 8.8106 -2.8615 0.1050 11 6 8.6679 -4.1640 -0.7259 12 6 9.2491 -3.9776 -2.1289 13 6 9.3406 -5.3403 -0.0153 14 7 10.7922 -5.1192 0.0309 15 6 11.4728 -6.2309 0.7083 16 6 12.9566 -5.9695 0.7358 17 8 13.4034 -4.9569 0.2395 18 7 13.7873 -6.8608 1.3119 19 6 15.1374 -6.6232 1.3364 20 1 15.5352 -5.7221 0.8938 21 6 15.9938 -7.5425 1.9299 22 7 15.5098 -8.6393 2.4681 23 14 17.8332 -7.2185 1.9640 24 1 18.1813 -6.4708 3.1990 25 1 18.5640 -8.5111 1.9453 26 1 18.2166 -6.4159 0.7748 27 6 7.1395 -4.3671 -0.7901 28 1 -1.0498 -0.0004 0.0001 29 1 3.0090 0.6649 -0.7843 30 1 3.0092 0.3479 0.9672 31 1 2.7936 -2.0829 0.5272 32 1 2.7934 -1.7658 -1.2243 33 1 5.0500 -0.7536 -1.0404 34 1 5.0494 -1.0709 0.7111 35 1 7.7927 -1.5561 -1.3228 36 1 7.2869 -1.3208 0.3783 37 1 8.7521 -3.0710 1.1731 38 1 9.7370 -2.3417 -0.1395 39 1 8.7973 -3.1026 -2.5959 40 1 10.3277 -3.8362 -2.0595 41 1 9.0366 -4.8612 -2.7305 42 1 8.9530 -5.4212 1.0002 43 1 9.1305 -6.2614 -0.5589 44 1 11.1659 -4.9765 -0.8954 45 1 11.0998 -6.3175 1.7288 46 1 11.2775 -7.1584 0.1701 47 1 13.4302 -7.6708 1.7085 48 1 16.1077 -9.2808 2.8827 49 1 6.8263 -5.0721 -0.0199 50 1 6.8542 -4.7415 -1.7732 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754691551.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:36:20 Heat of formation + Delta-G solvation = -31.741875 kcal Electronic energy + Delta-G solvation = -27780.498856 eV Core-core repulsion = 23808.501785 eV Total energy + Delta-G solvation = -3971.997071 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.57726 -38.75902 -38.09293 -35.97008 -35.48350 -33.91890 -32.90774 -32.35918 -31.21108 -29.81442 -28.74862 -27.50554 -26.76829 -24.94553 -23.64905 -22.95028 -22.31344 -19.61726 -19.40025 -19.07343 -18.43842 -17.90417 -17.17249 -16.75127 -16.12414 -15.89179 -15.55615 -15.38636 -14.82914 -14.62098 -14.44320 -14.25468 -14.15173 -13.84933 -13.59153 -13.39061 -13.24376 -12.84912 -12.72214 -12.67199 -12.55730 -12.24810 -12.09165 -11.94465 -11.65582 -11.54428 -11.53171 -11.39955 -11.06179 -10.98005 -10.75636 -10.70165 -10.60485 -10.47122 -10.40653 -10.23119 -10.06021 -9.52080 -8.89131 -8.47461 -8.07684 -7.97089 -6.42928 -3.83868 2.39020 2.40607 2.48086 2.73773 3.16880 3.25658 3.31198 3.89335 3.93921 3.98061 4.14637 4.28584 4.36998 4.50138 4.57980 4.63880 4.71977 4.92520 4.97242 5.00299 5.05341 5.10223 5.13221 5.16072 5.19020 5.24905 5.31634 5.46507 5.50046 5.58644 5.65531 5.69660 5.71240 5.73849 5.78407 5.85847 5.87263 5.95026 5.97115 6.06291 6.09090 6.21594 6.25305 7.17318 7.25531 7.26351 7.53937 7.63575 7.91506 8.05061 8.59895 9.16585 9.53176 10.04356 10.74778 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.036101 B = 0.001513 C = 0.001508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 775.421672 B =18502.545723 C =18568.928342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.186 4.186 3 C -0.014 4.014 4 C -0.100 4.100 5 C -0.136 4.136 6 C 0.526 3.474 7 O -0.543 6.543 8 N -0.617 5.617 9 C 0.094 3.906 10 C -0.110 4.110 11 C -0.069 4.069 12 C -0.143 4.143 13 C 0.074 3.926 14 N -0.665 5.665 15 C 0.050 3.950 16 C 0.441 3.559 17 O -0.584 6.584 18 N -0.563 5.563 19 C -0.300 4.300 20 H 0.103 0.897 21 C 0.023 3.977 22 N -0.902 5.902 23 Si 0.930 3.070 24 H -0.278 1.278 25 H -0.284 1.284 26 H -0.270 1.270 27 C 0.117 3.883 28 H 0.216 0.784 29 H 0.087 0.913 30 H 0.088 0.912 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.095 0.905 34 H 0.096 0.904 35 H 0.070 0.930 36 H 0.076 0.924 37 H 0.080 0.920 38 H 0.093 0.907 39 H 0.057 0.943 40 H 0.072 0.928 41 H 0.056 0.944 42 H 0.074 0.926 43 H 0.030 0.970 44 H 0.349 0.651 45 H 0.086 0.914 46 H 0.043 0.957 47 H 0.392 0.608 48 H 0.271 0.729 49 H 0.069 0.931 50 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.125 13.772 -5.412 27.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.186 4.186 3 C -0.050 4.050 4 C -0.138 4.138 5 C -0.176 4.176 6 C 0.315 3.685 7 O -0.421 6.421 8 N -0.352 5.352 9 C -0.029 4.029 10 C -0.148 4.148 11 C -0.070 4.070 12 C -0.200 4.200 13 C -0.056 4.056 14 N -0.299 5.299 15 C -0.083 4.083 16 C 0.226 3.774 17 O -0.468 6.468 18 N -0.200 5.200 19 C -0.430 4.430 20 H 0.121 0.879 21 C -0.179 4.179 22 N -0.543 5.543 23 Si 0.757 3.243 24 H -0.204 1.204 25 H -0.209 1.209 26 H -0.194 1.194 27 C -0.006 4.006 28 H 0.233 0.767 29 H 0.106 0.894 30 H 0.106 0.894 31 H 0.093 0.907 32 H 0.093 0.907 33 H 0.113 0.887 34 H 0.114 0.886 35 H 0.089 0.911 36 H 0.095 0.905 37 H 0.098 0.902 38 H 0.112 0.888 39 H 0.076 0.924 40 H 0.091 0.909 41 H 0.075 0.925 42 H 0.092 0.908 43 H 0.048 0.952 44 H 0.170 0.830 45 H 0.104 0.896 46 H 0.061 0.939 47 H 0.225 0.775 48 H 0.081 0.919 49 H 0.087 0.913 50 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -23.232 14.204 -5.180 27.718 hybrid contribution 0.512 -1.186 -0.288 1.324 sum -22.720 13.017 -5.468 26.750 Atomic orbital electron populations 1.24926 0.96036 1.00644 1.01214 1.23092 0.94581 1.00561 1.00378 1.18764 0.84908 0.98060 1.03282 1.21289 0.92890 0.95481 1.04115 1.21657 0.97241 0.94354 1.04342 1.20356 0.80417 0.91205 0.76541 1.90720 1.54465 1.46822 1.50057 1.48535 1.05108 1.10305 1.71221 1.22548 0.87598 0.91712 1.00997 1.22805 0.97208 0.94517 1.00228 1.21569 0.92614 0.96344 0.96451 1.21875 1.02005 1.01745 0.94422 1.21907 0.88988 0.94817 0.99916 1.60099 1.01431 1.42554 1.25835 1.21667 0.94339 0.92164 1.00083 1.19800 0.87209 0.85694 0.84659 1.90516 1.77440 1.28316 1.50569 1.41866 1.06939 1.20361 1.50833 1.19702 0.81387 1.06679 1.35188 0.87917 1.25259 1.00692 0.95236 0.96702 1.69613 1.36350 1.10131 1.38193 0.85863 0.81976 0.77605 0.78872 1.20386 1.20942 1.19423 1.21992 0.91698 0.85294 1.01608 0.76692 0.89434 0.89394 0.90693 0.90735 0.88667 0.88575 0.91140 0.90520 0.90160 0.88800 0.92409 0.90903 0.92535 0.90770 0.95164 0.82975 0.89629 0.93914 0.77463 0.91868 0.91270 0.91374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -1.57 19.25 29.55 0.57 -1.00 16 2 C -0.19 -1.51 13.34 -37.12 -0.50 -2.00 16 3 C -0.01 -0.08 5.70 -29.52 -0.17 -0.25 16 4 C -0.10 -0.72 4.46 -26.73 -0.12 -0.84 16 5 C -0.14 -0.85 4.70 -27.89 -0.13 -0.98 16 6 C 0.53 5.43 7.85 -10.99 -0.09 5.35 16 7 O -0.54 -7.83 16.31 5.56 0.09 -7.74 16 8 N -0.62 -5.76 3.32 -170.38 -0.57 -6.32 16 9 C 0.09 0.66 6.38 -2.41 -0.02 0.65 16 10 C -0.11 -0.97 5.87 -24.46 -0.14 -1.12 16 11 C -0.07 -0.65 0.71 -152.67 -0.11 -0.76 16 12 C -0.14 -1.31 8.12 37.16 0.30 -1.01 16 13 C 0.07 0.83 4.58 -3.82 -0.02 0.82 16 14 N -0.67 -9.84 5.90 -115.06 -0.68 -10.52 16 15 C 0.05 0.85 6.17 -4.98 -0.03 0.82 16 16 C 0.44 10.14 7.82 -10.99 -0.09 10.05 16 17 O -0.58 -15.39 15.78 5.54 0.09 -15.31 16 18 N -0.56 -14.06 5.29 -10.97 -0.06 -14.12 16 19 C -0.30 -8.27 9.68 -14.93 -0.14 -8.42 16 20 H 0.10 2.97 7.16 -52.49 -0.38 2.59 16 21 C 0.02 0.60 5.50 -17.47 -0.10 0.51 16 22 N -0.90 -24.34 13.05 55.50 0.72 -23.62 16 23 Si 0.93 20.83 29.55 -169.99 -5.02 15.81 16 24 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 25 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 26 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 27 C 0.12 1.17 6.04 -3.06 -0.02 1.15 16 28 H 0.22 0.89 7.80 -54.10 -0.42 0.47 16 29 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.07 0.66 8.10 -51.93 -0.42 0.24 16 32 H 0.07 0.64 8.10 -51.93 -0.42 0.22 16 33 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.10 0.43 7.85 -51.93 -0.41 0.02 16 35 H 0.07 0.43 7.67 -51.93 -0.40 0.03 16 36 H 0.08 0.40 7.48 -51.93 -0.39 0.02 16 37 H 0.08 0.78 8.03 -51.93 -0.42 0.36 16 38 H 0.09 0.89 8.04 -51.93 -0.42 0.48 16 39 H 0.06 0.48 7.39 -51.93 -0.38 0.09 16 40 H 0.07 0.76 6.48 -51.93 -0.34 0.42 16 41 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 42 H 0.07 0.83 8.11 -51.93 -0.42 0.41 16 43 H 0.03 0.33 8.14 -51.93 -0.42 -0.09 16 44 H 0.35 5.35 6.41 -39.29 -0.25 5.10 16 45 H 0.09 1.35 8.14 -51.93 -0.42 0.92 16 46 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 47 H 0.39 9.38 7.90 -40.82 -0.32 9.06 16 48 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 49 H 0.07 0.74 7.82 -51.93 -0.41 0.34 16 50 H 0.07 0.71 7.85 -51.93 -0.41 0.30 16 LS Contribution 414.16 15.07 6.24 6.24 Total: -1.00 -33.76 414.16 -8.26 -42.02 By element: Atomic # 1 Polarization: 18.89 SS G_CDS: -8.29 Total: 10.60 kcal Atomic # 6 Polarization: 3.75 SS G_CDS: -0.79 Total: 2.96 kcal Atomic # 7 Polarization: -54.00 SS G_CDS: -0.58 Total: -54.58 kcal Atomic # 8 Polarization: -23.23 SS G_CDS: 0.18 Total: -23.05 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Total LS contribution 6.24 Total: 6.24 kcal Total: -33.76 -8.26 -42.02 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754691551.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.279 kcal (2) G-P(sol) polarization free energy of solvation -33.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.021 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds