Wall clock time and date at job start Tue Mar 31 2020 19:36:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17393 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 C 1.52997 * 109.47168 * 10.26207 * 3 2 1 5 5 C 1.52996 * 109.47131 * 180.02562 * 4 3 2 6 6 C 1.50698 * 109.47188 * 180.02562 * 5 4 3 7 7 O 1.21282 * 120.00025 * 359.97438 * 6 5 4 8 8 N 1.34776 * 120.00035 * 180.02562 * 6 5 4 9 9 C 1.47427 * 125.64826 * 359.68469 * 8 6 5 10 10 C 1.55134 * 104.72150 * 155.82107 * 9 8 6 11 11 C 1.55157 * 101.48532 * 37.29614 * 10 9 8 12 12 C 1.53003 * 110.72151 * 82.69567 * 11 10 9 13 13 C 1.53000 * 110.87196 * 205.89890 * 11 10 9 14 14 N 1.46909 * 109.47217 * 293.61218 * 13 11 10 15 15 C 1.46896 * 111.00243 * 179.97438 * 14 13 11 16 16 C 1.50692 * 109.47316 * 179.97438 * 15 14 13 17 17 O 1.21298 * 119.99800 * 359.97438 * 16 15 14 18 18 N 1.34775 * 120.00216 * 179.97438 * 16 15 14 19 19 C 1.37103 * 119.99868 * 179.97438 * 18 16 15 20 20 H 1.07991 * 120.00125 * 359.97438 * 19 18 16 21 21 C 1.38948 * 119.99557 * 180.02562 * 19 18 16 22 22 N 1.31414 * 120.00361 * 359.97438 * 21 19 18 23 23 Si 1.86802 * 119.99991 * 180.02562 * 21 19 18 24 24 H 1.48504 * 109.47067 * 89.99401 * 23 21 19 25 25 H 1.48496 * 109.47445 * 209.99889 * 23 21 19 26 26 H 1.48503 * 109.47064 * 329.99856 * 23 21 19 27 27 C 1.47020 * 125.64880 * 179.97438 * 8 6 5 28 28 H 4.44645 * 5.63342 * 179.97438 * 4 1 2 29 29 H 1.09001 * 109.47046 * 130.25833 * 3 2 1 30 30 H 1.08996 * 109.47366 * 250.26237 * 3 2 1 31 31 H 1.09001 * 109.47289 * 300.00032 * 4 3 2 32 32 H 1.09004 * 109.47261 * 59.99776 * 4 3 2 33 33 H 1.09001 * 109.46997 * 299.99574 * 5 4 3 34 34 H 1.08996 * 109.47452 * 60.00000 * 5 4 3 35 35 H 1.09001 * 110.36807 * 274.74690 * 9 8 6 36 36 H 1.08993 * 110.36664 * 37.07238 * 9 8 6 37 37 H 1.09004 * 111.19328 * 279.19228 * 10 9 8 38 38 H 1.08998 * 110.90473 * 155.27511 * 10 9 8 39 39 H 1.08995 * 109.46641 * 306.48050 * 12 11 10 40 40 H 1.09002 * 109.46890 * 66.47555 * 12 11 10 41 41 H 1.08990 * 109.47143 * 186.47268 * 12 11 10 42 42 H 1.09001 * 109.47366 * 53.60687 * 13 11 10 43 43 H 1.08997 * 109.47372 * 173.60948 * 13 11 10 44 44 H 1.00900 * 110.99593 * 303.95724 * 14 13 11 45 45 H 1.09000 * 109.47317 * 300.00102 * 15 14 13 46 46 H 1.09005 * 109.47004 * 59.99489 * 15 14 13 47 47 H 0.96996 * 120.00200 * 0.02562 * 18 16 15 48 48 H 0.96997 * 119.99622 * 180.02562 * 22 21 19 49 49 H 1.09007 * 109.88253 * 300.43427 * 27 8 6 50 50 H 1.08993 * 109.88781 * 61.44788 * 27 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1566 -1.4185 -0.2570 5 6 4.6866 -1.4179 -0.2563 6 6 5.1896 -2.8157 -0.5101 7 8 4.4019 -3.7230 -0.6747 8 7 6.5147 -3.0575 -0.5530 9 6 7.5779 -2.0517 -0.3760 10 6 8.8106 -2.8615 0.1050 11 6 8.6679 -4.1640 -0.7259 12 6 9.2491 -3.9776 -2.1289 13 6 9.3406 -5.3403 -0.0153 14 7 10.7922 -5.1192 0.0309 15 6 11.4728 -6.2309 0.7083 16 6 12.9566 -5.9695 0.7358 17 8 13.4034 -4.9569 0.2395 18 7 13.7873 -6.8608 1.3119 19 6 15.1374 -6.6232 1.3364 20 1 15.5352 -5.7221 0.8938 21 6 15.9938 -7.5425 1.9299 22 7 15.5098 -8.6393 2.4681 23 14 17.8332 -7.2185 1.9640 24 1 18.1813 -6.4708 3.1990 25 1 18.5640 -8.5111 1.9453 26 1 18.2166 -6.4159 0.7748 27 6 7.1395 -4.3671 -0.7901 28 1 -1.0498 -0.0004 0.0001 29 1 3.0090 0.6649 -0.7843 30 1 3.0092 0.3479 0.9672 31 1 2.7936 -2.0829 0.5272 32 1 2.7934 -1.7658 -1.2243 33 1 5.0500 -0.7536 -1.0404 34 1 5.0494 -1.0709 0.7111 35 1 7.7927 -1.5561 -1.3228 36 1 7.2869 -1.3208 0.3783 37 1 8.7521 -3.0710 1.1731 38 1 9.7370 -2.3417 -0.1395 39 1 8.7973 -3.1026 -2.5959 40 1 10.3277 -3.8362 -2.0595 41 1 9.0366 -4.8612 -2.7305 42 1 8.9530 -5.4212 1.0002 43 1 9.1305 -6.2614 -0.5589 44 1 11.1659 -4.9765 -0.8954 45 1 11.0998 -6.3175 1.7288 46 1 11.2775 -7.1584 0.1701 47 1 13.4302 -7.6708 1.7085 48 1 16.1077 -9.2808 2.8827 49 1 6.8263 -5.0721 -0.0199 50 1 6.8542 -4.7415 -1.7732 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754691551.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:36:19 Heat of formation + Delta-G solvation = -54.561543 kcal Electronic energy + Delta-G solvation = -27781.488391 eV Core-core repulsion = 23808.501785 eV Total energy + Delta-G solvation = -3972.986606 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.35033 -40.16001 -39.34985 -36.71161 -36.45004 -35.82126 -33.80345 -33.23987 -33.00982 -30.53903 -29.42131 -28.72879 -27.62401 -26.50185 -24.76092 -23.83259 -22.92558 -21.12137 -20.27568 -20.02084 -19.84033 -18.98447 -18.07416 -17.60893 -17.31976 -16.97061 -16.62985 -16.44059 -16.06975 -16.02204 -15.42524 -15.32117 -15.16944 -14.92911 -14.78027 -14.31558 -14.09340 -13.89672 -13.67108 -13.46203 -13.37913 -13.35530 -13.21357 -13.10157 -12.87158 -12.77184 -12.51077 -12.42285 -12.40155 -12.11375 -11.94522 -11.80036 -11.57485 -11.49514 -11.45171 -11.17203 -10.96428 -10.87001 -10.31378 -9.99846 -9.65319 -9.29330 -8.45320 -5.93990 1.39283 1.43150 1.55673 1.63821 1.81885 1.93270 2.05749 2.07334 2.30371 2.90586 3.22376 3.38194 3.52019 3.61016 3.65180 3.76630 3.86379 4.07666 4.16002 4.22506 4.25846 4.36403 4.39959 4.47451 4.51605 4.57553 4.61435 4.63684 4.68193 4.71005 4.75393 4.77210 4.82543 4.94559 5.00097 5.06938 5.19285 5.20826 5.22245 5.29400 5.34621 5.36592 5.42419 5.45621 5.89102 6.10672 6.43275 6.54860 6.61534 6.72839 7.14104 7.15850 7.58210 8.13018 8.72085 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.036101 B = 0.001513 C = 0.001508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 775.421672 B =18502.545723 C =18568.928342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.216 4.216 3 C -0.010 4.010 4 C -0.094 4.094 5 C -0.126 4.126 6 C 0.518 3.482 7 O -0.595 6.595 8 N -0.617 5.617 9 C 0.098 3.902 10 C -0.110 4.110 11 C -0.062 4.062 12 C -0.139 4.139 13 C 0.076 3.924 14 N -0.672 5.672 15 C 0.064 3.936 16 C 0.439 3.561 17 O -0.620 6.620 18 N -0.574 5.574 19 C -0.333 4.333 20 H 0.080 0.920 21 C -0.013 4.013 22 N -0.921 5.921 23 Si 0.992 3.008 24 H -0.271 1.271 25 H -0.272 1.272 26 H -0.272 1.272 27 C 0.119 3.881 28 H 0.238 0.762 29 H 0.107 0.893 30 H 0.106 0.894 31 H 0.051 0.949 32 H 0.053 0.947 33 H 0.124 0.876 34 H 0.123 0.877 35 H 0.087 0.913 36 H 0.103 0.897 37 H 0.072 0.928 38 H 0.088 0.912 39 H 0.069 0.931 40 H 0.060 0.940 41 H 0.057 0.943 42 H 0.077 0.923 43 H 0.037 0.963 44 H 0.346 0.654 45 H 0.102 0.898 46 H 0.063 0.937 47 H 0.396 0.604 48 H 0.277 0.723 49 H 0.058 0.942 50 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.319 15.194 -5.282 28.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.216 4.216 3 C -0.046 4.046 4 C -0.132 4.132 5 C -0.165 4.165 6 C 0.309 3.691 7 O -0.476 6.476 8 N -0.350 5.350 9 C -0.024 4.024 10 C -0.148 4.148 11 C -0.062 4.062 12 C -0.196 4.196 13 C -0.053 4.053 14 N -0.306 5.306 15 C -0.069 4.069 16 C 0.227 3.773 17 O -0.507 6.507 18 N -0.211 5.211 19 C -0.463 4.463 20 H 0.098 0.902 21 C -0.212 4.212 22 N -0.562 5.562 23 Si 0.816 3.184 24 H -0.197 1.197 25 H -0.197 1.197 26 H -0.196 1.196 27 C -0.005 4.005 28 H 0.255 0.745 29 H 0.125 0.875 30 H 0.124 0.876 31 H 0.070 0.930 32 H 0.072 0.928 33 H 0.142 0.858 34 H 0.141 0.859 35 H 0.105 0.895 36 H 0.121 0.879 37 H 0.091 0.909 38 H 0.107 0.893 39 H 0.088 0.912 40 H 0.079 0.921 41 H 0.076 0.924 42 H 0.095 0.905 43 H 0.055 0.945 44 H 0.166 0.834 45 H 0.120 0.880 46 H 0.081 0.919 47 H 0.229 0.771 48 H 0.086 0.914 49 H 0.076 0.924 50 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -23.431 15.633 -5.040 28.614 hybrid contribution 0.508 -1.635 -0.348 1.747 sum -22.923 13.998 -5.387 27.394 Atomic orbital electron populations 1.25707 0.97143 1.00153 1.00960 1.23859 0.95891 1.01072 1.00790 1.18852 0.83666 0.97148 1.04972 1.21175 0.93832 0.96090 1.02115 1.21694 0.96136 0.92012 1.06695 1.21141 0.80175 0.92339 0.75479 1.90698 1.55727 1.48691 1.52462 1.48636 1.05424 1.10493 1.70437 1.22689 0.85805 0.91218 1.02665 1.22771 0.98012 0.94347 0.99627 1.21466 0.92049 0.96081 0.96650 1.21829 1.01147 1.02412 0.94228 1.21951 0.86826 0.96028 1.00530 1.60093 1.03095 1.41822 1.25586 1.21526 0.89940 0.93683 1.01746 1.20843 0.89514 0.84402 0.82564 1.90486 1.78848 1.29704 1.51630 1.41941 1.06534 1.21008 1.51660 1.19681 0.83083 1.06723 1.36811 0.90180 1.26026 1.04666 0.94750 0.95776 1.69676 1.37831 1.10538 1.38202 0.84939 0.76848 0.77849 0.78784 1.19680 1.19688 1.19642 1.21884 0.91847 0.85869 1.00885 0.74536 0.87464 0.87572 0.92967 0.92836 0.85821 0.85937 0.89457 0.87860 0.90949 0.89302 0.91153 0.92138 0.92443 0.90504 0.94484 0.83380 0.87970 0.91918 0.77061 0.91365 0.92390 0.92013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -3.16 19.25 74.32 1.43 -1.73 16 2 C -0.22 -3.32 13.34 31.13 0.42 -2.90 16 3 C -0.01 -0.10 5.70 28.79 0.16 0.07 16 4 C -0.09 -1.27 4.46 30.59 0.14 -1.14 16 5 C -0.13 -1.25 4.70 29.85 0.14 -1.11 16 6 C 0.52 10.09 7.85 87.66 0.69 10.78 16 7 O -0.59 -17.44 16.31 -3.04 -0.05 -17.49 16 8 N -0.62 -10.43 3.32 -811.35 -2.70 -13.13 16 9 C 0.10 1.08 6.38 86.93 0.55 1.64 16 10 C -0.11 -1.75 5.87 32.06 0.19 -1.56 16 11 C -0.06 -1.09 0.71 -50.99 -0.04 -1.13 16 12 C -0.14 -2.37 8.12 71.98 0.58 -1.79 16 13 C 0.08 1.62 4.58 86.30 0.40 2.02 16 14 N -0.67 -19.28 5.90 -517.93 -3.05 -22.33 16 15 C 0.06 2.09 6.17 85.56 0.53 2.61 16 16 C 0.44 20.32 7.82 87.65 0.69 21.00 16 17 O -0.62 -33.23 15.78 -3.09 -0.05 -33.27 16 18 N -0.57 -29.02 5.29 -306.99 -1.62 -30.65 16 19 C -0.33 -18.72 9.68 84.04 0.81 -17.90 16 20 H 0.08 4.78 7.16 -2.92 -0.02 4.76 16 21 C -0.01 -0.66 5.50 84.93 0.47 -0.20 16 22 N -0.92 -49.45 13.05 21.66 0.28 -49.16 16 23 Si 0.99 42.45 29.55 68.60 2.03 44.48 16 24 H -0.27 -11.28 7.11 99.48 0.71 -10.58 16 25 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 26 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 27 C 0.12 2.27 6.04 86.73 0.52 2.79 16 28 H 0.24 1.74 7.80 -4.43 -0.03 1.71 16 29 H 0.11 0.60 8.14 -2.39 -0.02 0.58 16 30 H 0.11 0.62 8.14 -2.39 -0.02 0.60 16 31 H 0.05 0.93 8.10 -2.39 -0.02 0.91 16 32 H 0.05 0.94 8.10 -2.38 -0.02 0.92 16 33 H 0.12 0.58 8.14 -2.39 -0.02 0.56 16 34 H 0.12 0.62 7.85 -2.39 -0.02 0.60 16 35 H 0.09 0.74 7.67 -2.39 -0.02 0.72 16 36 H 0.10 0.65 7.48 -2.39 -0.02 0.63 16 37 H 0.07 1.28 8.03 -2.38 -0.02 1.26 16 38 H 0.09 1.55 8.04 -2.39 -0.02 1.53 16 39 H 0.07 1.02 7.39 -2.39 -0.02 1.00 16 40 H 0.06 1.21 6.48 -2.39 -0.02 1.19 16 41 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 42 H 0.08 1.62 8.11 -2.39 -0.02 1.60 16 43 H 0.04 0.76 8.14 -2.39 -0.02 0.74 16 44 H 0.35 10.43 6.41 -89.69 -0.57 9.85 16 45 H 0.10 3.05 8.14 -2.39 -0.02 3.03 16 46 H 0.06 1.84 8.14 -2.38 -0.02 1.82 16 47 H 0.40 19.08 7.90 -92.71 -0.73 18.35 16 48 H 0.28 13.93 8.31 -92.71 -0.77 13.16 16 49 H 0.06 1.24 7.82 -2.38 -0.02 1.22 16 50 H 0.06 1.26 7.85 -2.39 -0.02 1.24 16 Total: -1.00 -75.16 414.16 2.15 -73.02 By element: Atomic # 1 Polarization: 37.46 SS G_CDS: -0.37 Total: 37.09 kcal Atomic # 6 Polarization: 3.78 SS G_CDS: 7.68 Total: 11.46 kcal Atomic # 7 Polarization: -108.18 SS G_CDS: -7.09 Total: -115.27 kcal Atomic # 8 Polarization: -50.67 SS G_CDS: -0.10 Total: -50.77 kcal Atomic # 14 Polarization: 42.45 SS G_CDS: 2.03 Total: 44.48 kcal Total: -75.16 2.15 -73.02 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754691551.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.454 kcal (2) G-P(sol) polarization free energy of solvation -75.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.015 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds