Wall clock time and date at job start Tue Mar 31 2020 19:36:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17393 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 C 1.53005 * 109.47032 * 221.92689 * 3 2 1 5 5 C 1.53000 * 109.47090 * 180.02562 * 4 3 2 6 6 C 1.50702 * 109.47063 * 179.97438 * 5 4 3 7 7 O 1.21275 * 120.00055 * 359.97438 * 6 5 4 8 8 N 1.34775 * 120.00105 * 179.97438 * 6 5 4 9 9 C 1.47026 * 125.64519 * 0.02606 * 8 6 5 10 10 C 1.54330 * 107.26840 * 178.90227 * 9 8 6 11 11 C 1.55155 * 102.94292 * 337.81024 * 10 9 8 12 12 C 1.53002 * 111.00164 * 277.42636 * 11 10 9 13 13 C 1.52994 * 111.03735 * 153.59095 * 11 10 9 14 14 N 1.46897 * 109.47203 * 67.78469 * 13 11 10 15 15 C 1.46909 * 110.99869 * 179.97438 * 14 13 11 16 16 C 1.50701 * 109.46973 * 179.97438 * 15 14 13 17 17 O 1.21296 * 120.00027 * 0.02562 * 16 15 14 18 18 N 1.34776 * 119.99719 * 179.97438 * 16 15 14 19 19 C 1.37102 * 119.99835 * 180.02562 * 18 16 15 20 20 H 1.08003 * 119.99742 * 0.02562 * 19 18 16 21 21 C 1.38945 * 120.00324 * 180.02562 * 19 18 16 22 22 N 1.31412 * 119.99798 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 120.00484 * 179.97438 * 21 19 18 24 24 H 1.48502 * 109.46678 * 0.02562 * 23 21 19 25 25 H 1.48497 * 109.46789 * 119.99967 * 23 21 19 26 26 H 1.48493 * 109.47201 * 240.00207 * 23 21 19 27 27 C 1.47420 * 125.65051 * 179.97438 * 8 6 5 28 28 H 4.44646 * 5.63442 * 179.97438 * 4 1 2 29 29 H 1.08995 * 109.47308 * 101.92244 * 3 2 1 30 30 H 1.09005 * 109.47353 * 341.92222 * 3 2 1 31 31 H 1.09003 * 109.47300 * 59.99916 * 4 3 2 32 32 H 1.08999 * 109.46553 * 299.99510 * 4 3 2 33 33 H 1.09003 * 109.47191 * 59.99759 * 5 4 3 34 34 H 1.09005 * 109.47251 * 299.99505 * 5 4 3 35 35 H 1.08998 * 109.88351 * 298.31826 * 9 8 6 36 36 H 1.08998 * 109.88379 * 59.48616 * 9 8 6 37 37 H 1.08998 * 110.71700 * 96.16950 * 10 9 8 38 38 H 1.08991 * 110.72004 * 219.44241 * 10 9 8 39 39 H 1.08995 * 109.47451 * 172.19664 * 12 11 10 40 40 H 1.08998 * 109.47120 * 292.19668 * 12 11 10 41 41 H 1.08994 * 109.47104 * 52.19688 * 12 11 10 42 42 H 1.09008 * 109.46901 * 187.78254 * 13 11 10 43 43 H 1.09000 * 109.47423 * 307.77896 * 13 11 10 44 44 H 1.00900 * 110.99928 * 303.94775 * 14 13 11 45 45 H 1.08994 * 109.46846 * 299.99751 * 15 14 13 46 46 H 1.09003 * 109.46948 * 60.00073 * 15 14 13 47 47 H 0.96993 * 120.00459 * 0.02562 * 18 16 15 48 48 H 0.97002 * 120.00094 * 180.02562 * 22 21 19 49 49 H 1.08997 * 110.36858 * 323.00625 * 27 8 6 50 50 H 1.08997 * 110.36396 * 85.21612 * 27 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 6 3.1554 1.0741 0.9639 5 6 4.6854 1.0753 0.9634 6 6 5.1873 2.1330 1.9123 7 8 4.3989 2.8187 2.5279 8 7 6.5122 2.3170 2.0768 9 6 7.5733 1.5600 1.3965 10 6 8.9239 2.1345 1.8738 11 6 8.5429 3.5563 2.3642 12 6 8.4729 4.5396 1.1941 13 6 9.5206 4.0490 3.4329 14 7 10.8395 4.2705 2.8252 15 6 11.8063 4.7458 3.8241 16 6 13.1445 4.9607 3.1653 17 8 13.2796 4.7402 1.9803 18 7 14.1910 5.3990 3.8928 19 6 15.4084 5.5950 3.2934 20 1 15.5286 5.3987 2.2382 21 6 16.4875 6.0464 4.0434 22 7 16.3413 6.2848 5.3274 23 14 18.1463 6.3128 3.2270 24 1 18.0480 5.9742 1.7844 25 1 18.5480 7.7347 3.3749 26 1 19.1612 5.4419 3.8723 27 6 7.1376 3.3111 2.9679 28 1 -1.0502 -0.0001 -0.0003 29 1 3.0092 0.2131 -1.0054 30 1 3.0097 -0.9761 0.3189 31 1 2.7922 0.8616 1.9694 32 1 2.7917 2.0509 0.6449 33 1 5.0483 1.2880 -0.0422 34 1 5.0496 0.0985 1.2821 35 1 7.5046 0.5051 1.6619 36 1 7.4803 1.6797 0.3171 37 1 9.3281 1.5396 2.6927 38 1 9.6333 2.1885 1.0481 39 1 8.0713 5.4911 1.5424 40 1 9.4730 4.6939 0.7889 41 1 7.8247 4.1343 0.4172 42 1 9.1543 4.9840 3.8571 43 1 9.6047 3.3008 4.2211 44 1 11.1723 3.4345 2.3687 45 1 11.4557 5.6856 4.2505 46 1 11.9063 4.0026 4.6152 47 1 14.0830 5.5757 4.8404 48 1 17.0945 6.6002 5.8510 49 1 6.5593 4.2350 2.9706 50 1 7.2215 2.9140 3.9795 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754691552.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:36:24 Heat of formation + Delta-G solvation = -33.075631 kcal Electronic energy + Delta-G solvation = -27791.593686 eV Core-core repulsion = 23819.538779 eV Total energy + Delta-G solvation = -3972.054907 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.60503 -38.74560 -38.09717 -35.97447 -35.45889 -33.91768 -32.90866 -32.33683 -31.21221 -29.94657 -28.74013 -27.46597 -26.69180 -24.91731 -23.58987 -23.15676 -22.27782 -19.70494 -19.35273 -19.07698 -18.43057 -17.90125 -17.17103 -16.82044 -16.16840 -15.78294 -15.50372 -15.42589 -14.89593 -14.59698 -14.40771 -14.31785 -14.15544 -13.83802 -13.51261 -13.40303 -13.30735 -12.89951 -12.73890 -12.70058 -12.44838 -12.25990 -12.01125 -11.95347 -11.79485 -11.54498 -11.49666 -11.40874 -11.07648 -10.92771 -10.81282 -10.67542 -10.61055 -10.47901 -10.35665 -10.23923 -10.07748 -9.53350 -8.90042 -8.48088 -8.07486 -7.97246 -6.43209 -3.84068 2.37259 2.39764 2.47358 2.71689 3.15185 3.25934 3.32940 3.89077 3.92604 3.97719 4.13206 4.25988 4.29295 4.47339 4.55626 4.63781 4.74111 4.93338 4.95017 5.01363 5.04028 5.05123 5.14753 5.16323 5.18057 5.24435 5.30544 5.45951 5.53562 5.60100 5.64282 5.67090 5.68786 5.72926 5.78291 5.85527 5.90113 5.94212 5.96805 6.06427 6.11350 6.24932 6.44147 7.17115 7.23929 7.25299 7.53980 7.62972 7.89697 8.05115 8.59661 9.16554 9.53034 10.04158 10.74582 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.046390 B = 0.001499 C = 0.001477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 603.432627 B =18670.161382 C =18948.094878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.186 4.186 3 C -0.013 4.013 4 C -0.100 4.100 5 C -0.136 4.136 6 C 0.527 3.473 7 O -0.542 6.542 8 N -0.617 5.617 9 C 0.102 3.898 10 C -0.129 4.129 11 C -0.068 4.068 12 C -0.127 4.127 13 C 0.075 3.925 14 N -0.664 5.664 15 C 0.050 3.950 16 C 0.441 3.559 17 O -0.584 6.584 18 N -0.564 5.564 19 C -0.299 4.299 20 H 0.104 0.896 21 C 0.022 3.978 22 N -0.902 5.902 23 Si 0.929 3.071 24 H -0.268 1.268 25 H -0.281 1.281 26 H -0.282 1.282 27 C 0.115 3.885 28 H 0.216 0.784 29 H 0.088 0.912 30 H 0.087 0.913 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.096 0.904 34 H 0.095 0.905 35 H 0.068 0.932 36 H 0.070 0.930 37 H 0.076 0.924 38 H 0.091 0.909 39 H 0.054 0.946 40 H 0.080 0.920 41 H 0.045 0.955 42 H 0.075 0.925 43 H 0.030 0.970 44 H 0.348 0.652 45 H 0.086 0.914 46 H 0.043 0.957 47 H 0.392 0.608 48 H 0.271 0.729 49 H 0.080 0.920 50 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.894 -12.858 -6.182 27.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.186 4.186 3 C -0.050 4.050 4 C -0.138 4.138 5 C -0.176 4.176 6 C 0.316 3.684 7 O -0.419 6.419 8 N -0.351 5.351 9 C -0.021 4.021 10 C -0.166 4.166 11 C -0.069 4.069 12 C -0.184 4.184 13 C -0.056 4.056 14 N -0.296 5.296 15 C -0.082 4.082 16 C 0.226 3.774 17 O -0.468 6.468 18 N -0.200 5.200 19 C -0.429 4.429 20 H 0.121 0.879 21 C -0.179 4.179 22 N -0.543 5.543 23 Si 0.756 3.244 24 H -0.192 1.192 25 H -0.207 1.207 26 H -0.208 1.208 27 C -0.008 4.008 28 H 0.233 0.767 29 H 0.106 0.894 30 H 0.106 0.894 31 H 0.093 0.907 32 H 0.093 0.907 33 H 0.114 0.886 34 H 0.113 0.887 35 H 0.087 0.913 36 H 0.089 0.911 37 H 0.095 0.905 38 H 0.110 0.890 39 H 0.073 0.927 40 H 0.099 0.901 41 H 0.064 0.936 42 H 0.093 0.907 43 H 0.048 0.952 44 H 0.168 0.832 45 H 0.104 0.896 46 H 0.061 0.939 47 H 0.225 0.775 48 H 0.081 0.919 49 H 0.098 0.902 50 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -24.304 -11.957 -6.751 27.914 hybrid contribution 0.866 -0.576 0.884 1.365 sum -23.438 -12.533 -5.867 27.218 Atomic orbital electron populations 1.24937 0.96040 1.00874 1.00943 1.23086 0.94578 1.00500 1.00477 1.18762 0.84924 1.00340 1.00981 1.21291 0.92879 0.99333 1.00275 1.21660 0.97273 0.98716 0.99958 1.20336 0.80404 0.84712 0.82954 1.90721 1.54306 1.48221 1.48670 1.48496 1.05042 1.37253 1.44334 1.22070 0.87076 0.95664 0.97275 1.22805 0.95965 0.95522 1.02356 1.21746 0.93177 0.95253 0.96755 1.21638 1.03230 0.97531 0.96027 1.21843 0.89589 1.00102 0.94021 1.60036 1.01106 1.38890 1.29574 1.21674 0.92470 1.00710 0.93376 1.19804 0.85250 0.84470 0.87830 1.90519 1.84281 1.56429 1.15566 1.41872 1.08855 1.57998 1.11316 1.19753 0.85576 1.41416 0.96128 0.87865 1.25257 1.00008 0.97208 0.95442 1.69620 1.32687 1.45953 1.06036 0.85808 0.81275 0.77884 0.79433 1.19203 1.20742 1.20782 1.22288 0.92723 0.92674 0.93136 0.76675 0.89406 0.89450 0.90723 0.90680 0.88611 0.88686 0.91335 0.91131 0.90520 0.88998 0.92705 0.90068 0.93580 0.90652 0.95204 0.83224 0.89569 0.93929 0.77471 0.91922 0.90177 0.91446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -1.55 19.25 29.55 0.57 -0.98 16 2 C -0.19 -1.50 13.34 -37.12 -0.50 -1.99 16 3 C -0.01 -0.08 5.70 -29.52 -0.17 -0.24 16 4 C -0.10 -0.71 4.46 -26.73 -0.12 -0.83 16 5 C -0.14 -0.84 4.89 -27.88 -0.14 -0.97 16 6 C 0.53 5.37 7.85 -10.99 -0.09 5.28 16 7 O -0.54 -7.73 16.24 5.56 0.09 -7.64 16 8 N -0.62 -5.64 3.31 -170.53 -0.57 -6.20 16 9 C 0.10 0.69 6.09 -3.06 -0.02 0.67 16 10 C -0.13 -1.03 5.18 -24.89 -0.13 -1.16 16 11 C -0.07 -0.65 0.73 -152.37 -0.11 -0.76 16 12 C -0.13 -1.36 8.46 37.16 0.31 -1.04 16 13 C 0.07 0.83 4.73 -3.83 -0.02 0.81 16 14 N -0.66 -9.72 5.24 -115.05 -0.60 -10.33 16 15 C 0.05 0.84 6.17 -4.97 -0.03 0.81 16 16 C 0.44 10.10 7.82 -10.99 -0.09 10.01 16 17 O -0.58 -15.36 15.78 5.54 0.09 -15.27 16 18 N -0.56 -14.03 5.29 -10.96 -0.06 -14.08 16 19 C -0.30 -8.24 9.68 -14.93 -0.14 -8.38 16 20 H 0.10 2.99 7.16 -52.48 -0.38 2.61 16 21 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 22 N -0.90 -24.30 13.05 55.50 0.72 -23.58 16 23 Si 0.93 20.81 29.55 -169.99 -5.02 15.79 16 24 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 25 H -0.28 -6.23 7.11 56.52 0.40 -5.82 16 26 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 27 C 0.11 1.13 5.83 -2.54 -0.01 1.11 16 28 H 0.22 0.88 7.80 -54.08 -0.42 0.46 16 29 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.07 0.64 8.10 -51.93 -0.42 0.22 16 32 H 0.07 0.65 8.10 -51.93 -0.42 0.23 16 33 H 0.10 0.43 8.14 -51.93 -0.42 0.00 16 34 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 35 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 36 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 37 H 0.08 0.59 7.99 -51.93 -0.42 0.18 16 38 H 0.09 0.76 8.03 -51.93 -0.42 0.34 16 39 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 40 H 0.08 1.03 7.48 -51.93 -0.39 0.64 16 41 H 0.05 0.46 7.80 -51.93 -0.40 0.05 16 42 H 0.08 0.84 8.14 -51.92 -0.42 0.42 16 43 H 0.03 0.31 8.08 -51.93 -0.42 -0.11 16 44 H 0.35 5.21 7.71 -39.29 -0.30 4.91 16 45 H 0.09 1.35 8.14 -51.93 -0.42 0.93 16 46 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 47 H 0.39 9.34 7.90 -40.82 -0.32 9.02 16 48 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 49 H 0.08 0.89 7.95 -51.93 -0.41 0.48 16 50 H 0.07 0.65 8.04 -51.93 -0.42 0.23 16 LS Contribution 417.35 15.07 6.29 6.29 Total: -1.00 -33.74 417.35 -8.33 -42.07 By element: Atomic # 1 Polarization: 18.63 SS G_CDS: -8.50 Total: 10.13 kcal Atomic # 6 Polarization: 3.60 SS G_CDS: -0.77 Total: 2.83 kcal Atomic # 7 Polarization: -53.69 SS G_CDS: -0.50 Total: -54.19 kcal Atomic # 8 Polarization: -23.09 SS G_CDS: 0.18 Total: -22.91 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal Total LS contribution 6.29 Total: 6.29 kcal Total: -33.74 -8.33 -42.07 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754691552.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.996 kcal (2) G-P(sol) polarization free energy of solvation -33.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.071 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds