Wall clock time and date at job start Tue Mar 31 2020 19:36:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17393 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 C 1.53005 * 109.47032 * 221.92689 * 3 2 1 5 5 C 1.53000 * 109.47090 * 180.02562 * 4 3 2 6 6 C 1.50702 * 109.47063 * 179.97438 * 5 4 3 7 7 O 1.21275 * 120.00055 * 359.97438 * 6 5 4 8 8 N 1.34775 * 120.00105 * 179.97438 * 6 5 4 9 9 C 1.47026 * 125.64519 * 0.02606 * 8 6 5 10 10 C 1.54330 * 107.26840 * 178.90227 * 9 8 6 11 11 C 1.55155 * 102.94292 * 337.81024 * 10 9 8 12 12 C 1.53002 * 111.00164 * 277.42636 * 11 10 9 13 13 C 1.52994 * 111.03735 * 153.59095 * 11 10 9 14 14 N 1.46897 * 109.47203 * 67.78469 * 13 11 10 15 15 C 1.46909 * 110.99869 * 179.97438 * 14 13 11 16 16 C 1.50701 * 109.46973 * 179.97438 * 15 14 13 17 17 O 1.21296 * 120.00027 * 0.02562 * 16 15 14 18 18 N 1.34776 * 119.99719 * 179.97438 * 16 15 14 19 19 C 1.37102 * 119.99835 * 180.02562 * 18 16 15 20 20 H 1.08003 * 119.99742 * 0.02562 * 19 18 16 21 21 C 1.38945 * 120.00324 * 180.02562 * 19 18 16 22 22 N 1.31412 * 119.99798 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 120.00484 * 179.97438 * 21 19 18 24 24 H 1.48502 * 109.46678 * 0.02562 * 23 21 19 25 25 H 1.48497 * 109.46789 * 119.99967 * 23 21 19 26 26 H 1.48493 * 109.47201 * 240.00207 * 23 21 19 27 27 C 1.47420 * 125.65051 * 179.97438 * 8 6 5 28 28 H 4.44646 * 5.63442 * 179.97438 * 4 1 2 29 29 H 1.08995 * 109.47308 * 101.92244 * 3 2 1 30 30 H 1.09005 * 109.47353 * 341.92222 * 3 2 1 31 31 H 1.09003 * 109.47300 * 59.99916 * 4 3 2 32 32 H 1.08999 * 109.46553 * 299.99510 * 4 3 2 33 33 H 1.09003 * 109.47191 * 59.99759 * 5 4 3 34 34 H 1.09005 * 109.47251 * 299.99505 * 5 4 3 35 35 H 1.08998 * 109.88351 * 298.31826 * 9 8 6 36 36 H 1.08998 * 109.88379 * 59.48616 * 9 8 6 37 37 H 1.08998 * 110.71700 * 96.16950 * 10 9 8 38 38 H 1.08991 * 110.72004 * 219.44241 * 10 9 8 39 39 H 1.08995 * 109.47451 * 172.19664 * 12 11 10 40 40 H 1.08998 * 109.47120 * 292.19668 * 12 11 10 41 41 H 1.08994 * 109.47104 * 52.19688 * 12 11 10 42 42 H 1.09008 * 109.46901 * 187.78254 * 13 11 10 43 43 H 1.09000 * 109.47423 * 307.77896 * 13 11 10 44 44 H 1.00900 * 110.99928 * 303.94775 * 14 13 11 45 45 H 1.08994 * 109.46846 * 299.99751 * 15 14 13 46 46 H 1.09003 * 109.46948 * 60.00073 * 15 14 13 47 47 H 0.96993 * 120.00459 * 0.02562 * 18 16 15 48 48 H 0.97002 * 120.00094 * 180.02562 * 22 21 19 49 49 H 1.08997 * 110.36858 * 323.00625 * 27 8 6 50 50 H 1.08997 * 110.36396 * 85.21612 * 27 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 6 3.1554 1.0741 0.9639 5 6 4.6854 1.0753 0.9634 6 6 5.1873 2.1330 1.9123 7 8 4.3989 2.8187 2.5279 8 7 6.5122 2.3170 2.0768 9 6 7.5733 1.5600 1.3965 10 6 8.9239 2.1345 1.8738 11 6 8.5429 3.5563 2.3642 12 6 8.4729 4.5396 1.1941 13 6 9.5206 4.0490 3.4329 14 7 10.8395 4.2705 2.8252 15 6 11.8063 4.7458 3.8241 16 6 13.1445 4.9607 3.1653 17 8 13.2796 4.7402 1.9803 18 7 14.1910 5.3990 3.8928 19 6 15.4084 5.5950 3.2934 20 1 15.5286 5.3987 2.2382 21 6 16.4875 6.0464 4.0434 22 7 16.3413 6.2848 5.3274 23 14 18.1463 6.3128 3.2270 24 1 18.0480 5.9742 1.7844 25 1 18.5480 7.7347 3.3749 26 1 19.1612 5.4419 3.8723 27 6 7.1376 3.3111 2.9679 28 1 -1.0502 -0.0001 -0.0003 29 1 3.0092 0.2131 -1.0054 30 1 3.0097 -0.9761 0.3189 31 1 2.7922 0.8616 1.9694 32 1 2.7917 2.0509 0.6449 33 1 5.0483 1.2880 -0.0422 34 1 5.0496 0.0985 1.2821 35 1 7.5046 0.5051 1.6619 36 1 7.4803 1.6797 0.3171 37 1 9.3281 1.5396 2.6927 38 1 9.6333 2.1885 1.0481 39 1 8.0713 5.4911 1.5424 40 1 9.4730 4.6939 0.7889 41 1 7.8247 4.1343 0.4172 42 1 9.1543 4.9840 3.8571 43 1 9.6047 3.3008 4.2211 44 1 11.1723 3.4345 2.3687 45 1 11.4557 5.6856 4.2505 46 1 11.9063 4.0026 4.6152 47 1 14.0830 5.5757 4.8404 48 1 17.0945 6.6002 5.8510 49 1 6.5593 4.2350 2.9706 50 1 7.2215 2.9140 3.9795 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754691552.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:36:23 Heat of formation + Delta-G solvation = -55.686870 kcal Electronic energy + Delta-G solvation = -27792.574183 eV Core-core repulsion = 23819.538779 eV Total energy + Delta-G solvation = -3973.035403 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -41.35949 -40.14691 -39.32955 -36.68103 -36.44795 -35.80977 -33.78381 -33.23532 -32.99487 -30.62396 -29.40694 -28.74867 -27.54687 -26.49525 -24.64090 -24.03039 -22.88189 -21.11236 -20.35012 -19.96162 -19.83215 -18.97653 -18.02960 -17.68204 -17.32607 -16.92276 -16.56927 -16.41085 -16.11592 -15.99445 -15.42447 -15.30459 -15.16770 -14.85106 -14.76187 -14.45784 -14.02126 -13.94527 -13.56462 -13.48808 -13.42077 -13.34325 -13.21684 -13.09938 -12.87329 -12.81111 -12.53337 -12.45417 -12.38583 -12.10393 -11.95383 -11.75852 -11.58923 -11.49591 -11.44699 -11.17677 -10.96843 -10.87252 -10.31190 -9.99224 -9.62874 -9.26078 -8.45185 -5.93627 1.37841 1.43294 1.57206 1.63777 1.81596 1.92905 2.05434 2.08090 2.30575 2.92347 3.22711 3.37215 3.52377 3.55155 3.61084 3.79015 3.96615 4.07534 4.15552 4.24407 4.27335 4.33770 4.35448 4.47890 4.50788 4.59533 4.62266 4.65407 4.68789 4.73993 4.77094 4.79346 4.82931 4.95871 4.96872 5.10453 5.18960 5.20773 5.22134 5.27779 5.30350 5.36606 5.42983 5.52120 5.90607 6.12301 6.47489 6.54668 6.62132 6.72493 7.14787 7.15917 7.59002 8.13938 8.72461 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.046390 B = 0.001499 C = 0.001477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 603.432627 B =18670.161382 C =18948.094878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.216 4.216 3 C -0.010 4.010 4 C -0.094 4.094 5 C -0.126 4.126 6 C 0.518 3.482 7 O -0.594 6.594 8 N -0.616 5.616 9 C 0.102 3.898 10 C -0.126 4.126 11 C -0.062 4.062 12 C -0.121 4.121 13 C 0.077 3.923 14 N -0.674 5.674 15 C 0.065 3.935 16 C 0.439 3.561 17 O -0.621 6.621 18 N -0.575 5.575 19 C -0.332 4.332 20 H 0.080 0.920 21 C -0.013 4.013 22 N -0.921 5.921 23 Si 0.991 3.009 24 H -0.272 1.272 25 H -0.273 1.273 26 H -0.271 1.271 27 C 0.116 3.884 28 H 0.238 0.762 29 H 0.106 0.894 30 H 0.107 0.893 31 H 0.053 0.947 32 H 0.051 0.949 33 H 0.121 0.879 34 H 0.124 0.876 35 H 0.094 0.906 36 H 0.087 0.913 37 H 0.083 0.917 38 H 0.090 0.910 39 H 0.044 0.956 40 H 0.060 0.940 41 H 0.053 0.947 42 H 0.074 0.926 43 H 0.046 0.954 44 H 0.347 0.653 45 H 0.100 0.900 46 H 0.067 0.933 47 H 0.396 0.604 48 H 0.277 0.723 49 H 0.061 0.939 50 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.873 -14.535 -6.572 28.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.216 4.216 3 C -0.046 4.046 4 C -0.132 4.132 5 C -0.165 4.165 6 C 0.309 3.691 7 O -0.475 6.475 8 N -0.350 5.350 9 C -0.020 4.020 10 C -0.164 4.164 11 C -0.063 4.063 12 C -0.178 4.178 13 C -0.052 4.052 14 N -0.307 5.307 15 C -0.068 4.068 16 C 0.227 3.773 17 O -0.507 6.507 18 N -0.212 5.212 19 C -0.462 4.462 20 H 0.098 0.902 21 C -0.212 4.212 22 N -0.563 5.563 23 Si 0.815 3.185 24 H -0.197 1.197 25 H -0.198 1.198 26 H -0.196 1.196 27 C -0.007 4.007 28 H 0.255 0.745 29 H 0.124 0.876 30 H 0.125 0.875 31 H 0.072 0.928 32 H 0.070 0.930 33 H 0.139 0.861 34 H 0.142 0.858 35 H 0.112 0.888 36 H 0.105 0.895 37 H 0.102 0.898 38 H 0.109 0.891 39 H 0.063 0.937 40 H 0.079 0.921 41 H 0.073 0.927 42 H 0.093 0.907 43 H 0.064 0.936 44 H 0.166 0.834 45 H 0.119 0.881 46 H 0.085 0.915 47 H 0.230 0.770 48 H 0.086 0.914 49 H 0.079 0.921 50 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -24.280 -13.650 -7.131 28.752 hybrid contribution 0.789 -0.039 1.003 1.277 sum -23.491 -13.689 -6.128 27.870 Atomic orbital electron populations 1.25720 0.97148 1.00493 1.00581 1.23855 0.95890 1.00964 1.00934 1.18850 0.83681 1.00624 1.01474 1.21176 0.93854 0.98716 0.99471 1.21690 0.96134 0.98553 1.00138 1.21105 0.80206 0.84886 0.82873 1.90699 1.55602 1.50342 1.50859 1.48598 1.05373 1.36978 1.44004 1.22249 0.85250 0.96504 0.97970 1.22804 0.96808 0.94229 1.02566 1.21611 0.92740 0.96099 0.95856 1.21546 1.01979 0.97609 0.96667 1.21876 0.87884 1.00703 0.94722 1.60008 1.01881 1.39193 1.29587 1.21523 0.89295 1.02320 0.93647 1.20879 0.86765 0.82253 0.87431 1.90488 1.85309 1.57469 1.17456 1.41945 1.08853 1.58839 1.11555 1.19708 0.87458 1.43467 0.95537 0.90245 1.26012 1.02891 0.96335 0.95980 1.69679 1.33844 1.45913 1.06823 0.84890 0.77202 0.78194 0.78185 1.19677 1.19816 1.19623 1.22177 0.92440 0.92401 0.93700 0.74514 0.87613 0.87465 0.92809 0.93000 0.86090 0.85796 0.88783 0.89487 0.89825 0.89141 0.93651 0.92064 0.92748 0.90747 0.93595 0.83414 0.88148 0.91536 0.77042 0.91378 0.92054 0.91069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -3.14 19.25 74.32 1.43 -1.71 16 2 C -0.22 -3.31 13.34 31.13 0.42 -2.90 16 3 C -0.01 -0.09 5.70 28.79 0.16 0.07 16 4 C -0.09 -1.27 4.46 30.60 0.14 -1.13 16 5 C -0.13 -1.23 4.89 29.85 0.15 -1.08 16 6 C 0.52 9.97 7.85 87.66 0.69 10.66 16 7 O -0.59 -17.31 16.24 -3.02 -0.05 -17.36 16 8 N -0.62 -10.12 3.31 -811.82 -2.69 -12.81 16 9 C 0.10 1.04 6.09 86.73 0.53 1.57 16 10 C -0.13 -1.71 5.18 31.78 0.16 -1.54 16 11 C -0.06 -1.10 0.73 -50.79 -0.04 -1.14 16 12 C -0.12 -2.52 8.46 71.98 0.61 -1.91 16 13 C 0.08 1.59 4.73 86.30 0.41 2.00 16 14 N -0.67 -19.01 5.24 -517.92 -2.71 -21.72 16 15 C 0.06 2.08 6.17 85.56 0.53 2.61 16 16 C 0.44 20.19 7.82 87.66 0.69 20.87 16 17 O -0.62 -33.21 15.78 -3.08 -0.05 -33.25 16 18 N -0.57 -28.90 5.29 -306.98 -1.62 -30.52 16 19 C -0.33 -18.61 9.68 84.04 0.81 -17.80 16 20 H 0.08 4.75 7.16 -2.91 -0.02 4.73 16 21 C -0.01 -0.66 5.50 84.93 0.47 -0.20 16 22 N -0.92 -49.30 13.05 21.66 0.28 -49.02 16 23 Si 0.99 42.44 29.55 68.60 2.03 44.47 16 24 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 25 H -0.27 -11.25 7.11 99.48 0.71 -10.55 16 26 H -0.27 -11.08 7.11 99.48 0.71 -10.38 16 27 C 0.12 2.18 5.83 86.85 0.51 2.68 16 28 H 0.24 1.72 7.80 -4.41 -0.03 1.69 16 29 H 0.11 0.62 8.14 -2.39 -0.02 0.60 16 30 H 0.11 0.59 8.14 -2.38 -0.02 0.57 16 31 H 0.05 0.93 8.10 -2.39 -0.02 0.92 16 32 H 0.05 0.92 8.10 -2.39 -0.02 0.90 16 33 H 0.12 0.62 8.14 -2.39 -0.02 0.60 16 34 H 0.12 0.54 8.14 -2.38 -0.02 0.52 16 35 H 0.09 0.56 8.14 -2.39 -0.02 0.54 16 36 H 0.09 0.65 8.14 -2.39 -0.02 0.64 16 37 H 0.08 1.05 7.99 -2.39 -0.02 1.03 16 38 H 0.09 1.30 8.03 -2.39 -0.02 1.28 16 39 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 40 H 0.06 1.54 7.48 -2.39 -0.02 1.52 16 41 H 0.05 1.02 7.80 -2.39 -0.02 1.00 16 42 H 0.07 1.56 8.14 -2.38 -0.02 1.54 16 43 H 0.05 0.83 8.08 -2.39 -0.02 0.81 16 44 H 0.35 10.01 7.71 -89.69 -0.69 9.32 16 45 H 0.10 2.99 8.14 -2.39 -0.02 2.97 16 46 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 47 H 0.40 18.96 7.90 -92.71 -0.73 18.22 16 48 H 0.28 13.85 8.31 -92.71 -0.77 13.08 16 49 H 0.06 1.38 7.95 -2.39 -0.02 1.36 16 50 H 0.07 1.28 8.04 -2.39 -0.02 1.26 16 Total: -1.00 -75.54 417.35 2.35 -73.20 By element: Atomic # 1 Polarization: 36.46 SS G_CDS: -0.49 Total: 35.97 kcal Atomic # 6 Polarization: 3.40 SS G_CDS: 7.65 Total: 11.05 kcal Atomic # 7 Polarization: -107.34 SS G_CDS: -6.74 Total: -114.08 kcal Atomic # 8 Polarization: -50.52 SS G_CDS: -0.10 Total: -50.61 kcal Atomic # 14 Polarization: 42.44 SS G_CDS: 2.03 Total: 44.47 kcal Total: -75.54 2.35 -73.20 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754691552.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.512 kcal (2) G-P(sol) polarization free energy of solvation -75.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.198 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds