Wall clock time and date at job start Tue Mar 31 2020 19:35:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47369 * 2 1 4 4 C 1.53005 * 109.46785 * 239.99878 * 2 1 3 5 5 C 1.50701 * 109.47287 * 120.00036 * 2 1 3 6 6 C 1.35319 * 126.66411 * 60.28224 * 5 2 1 7 7 C 1.42276 * 103.92117 * 180.15212 * 6 5 2 8 8 C 1.48325 * 126.93850 * 179.88569 * 7 6 5 9 9 O 1.21496 * 120.00123 * 359.71158 * 8 7 6 10 10 N 1.34780 * 120.00260 * 179.71055 * 8 7 6 11 11 C 1.47485 * 127.02713 * 359.97438 * 10 8 7 12 12 C 1.54007 * 107.08191 * 205.48047 * 11 10 8 13 13 C 1.54614 * 105.04342 * 358.69964 * 12 11 10 14 14 C 1.52996 * 110.74189 * 96.48562 * 13 12 11 15 15 C 1.53007 * 110.73891 * 219.81218 * 13 12 11 16 16 N 1.46501 * 109.47034 * 179.97438 * 15 13 12 17 17 C 1.36938 * 119.99566 * 179.97438 * 16 15 13 18 18 H 1.07997 * 120.00130 * 0.02562 * 17 16 15 19 19 C 1.38812 * 119.99868 * 179.97438 * 17 16 15 20 20 N 1.31620 * 120.00166 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 120.00089 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.46786 * 60.00606 * 21 19 17 23 23 H 1.48497 * 109.46968 * 180.02562 * 21 19 17 24 24 H 1.48498 * 109.47262 * 300.00450 * 21 19 17 25 25 C 1.48114 * 127.03757 * 180.02562 * 10 8 7 26 26 N 1.30990 * 106.12039 * 359.62666 * 7 6 5 27 27 O 1.20902 * 111.44130 * 0.24147 * 26 7 6 28 28 H 1.09011 * 109.46857 * 300.00145 * 1 2 3 29 29 H 1.09001 * 109.47243 * 59.99656 * 1 2 3 30 30 H 1.08994 * 109.47274 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47277 * 180.02562 * 3 2 1 32 32 H 1.09000 * 109.46701 * 300.00308 * 3 2 1 33 33 H 1.08998 * 109.47049 * 60.00088 * 3 2 1 34 34 H 1.08994 * 109.47145 * 299.99994 * 4 2 1 35 35 H 1.09001 * 109.46849 * 60.00225 * 4 2 1 36 36 H 1.09003 * 109.47008 * 179.97438 * 4 2 1 37 37 H 1.08002 * 128.04293 * 0.02562 * 6 5 2 38 38 H 1.09003 * 109.91439 * 86.12402 * 11 10 8 39 39 H 1.08996 * 110.08042 * 324.93238 * 11 10 8 40 40 H 1.09004 * 110.32648 * 117.59017 * 12 11 10 41 41 H 1.09002 * 110.32949 * 239.80336 * 12 11 10 42 42 H 1.09000 * 109.47351 * 60.00268 * 14 13 12 43 43 H 1.09005 * 109.47377 * 179.97438 * 14 13 12 44 44 H 1.08993 * 109.47288 * 299.99900 * 14 13 12 45 45 H 1.08998 * 109.46797 * 299.99960 * 15 13 12 46 46 H 1.08997 * 109.46926 * 59.99882 * 15 13 12 47 47 H 0.96995 * 120.00232 * 359.97438 * 16 15 13 48 48 H 0.96994 * 120.00565 * 179.97438 * 20 19 17 49 49 H 1.08998 * 110.66152 * 259.11548 * 25 10 8 50 50 H 1.08999 * 110.65867 * 22.06282 * 25 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 2.0324 -0.7104 1.2304 6 6 1.7944 -1.9974 1.5742 7 6 2.4859 -2.1558 2.8075 8 6 2.5596 -3.3833 3.6369 9 8 1.9849 -4.3927 3.2804 10 7 3.2640 -3.3790 4.7859 11 6 4.0164 -2.2490 5.3622 12 6 5.1230 -2.8481 6.2500 13 6 4.9232 -4.3788 6.1622 14 6 5.8518 -4.9869 5.1091 15 6 5.1468 -5.0336 7.5268 16 7 4.9503 -6.4808 7.4121 17 6 5.0990 -7.2813 8.5132 18 1 5.3608 -6.8457 9.4661 19 6 4.9123 -8.6525 8.4047 20 7 4.5928 -9.1834 7.2434 21 14 5.1159 -9.7446 9.9065 22 1 4.1466 -9.3324 10.9532 23 1 4.8649 -11.1585 9.5280 24 1 6.4984 -9.6112 10.4318 25 6 3.4417 -4.5083 5.7276 26 7 3.0489 -1.0003 3.0597 27 8 2.8055 -0.1917 2.1944 28 1 -0.3633 0.5139 0.8901 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 3.1301 1.4425 -0.0005 32 1 1.6766 1.9563 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 1.6766 -1.7489 -1.2493 35 1 1.6765 -0.2074 -2.1392 36 1 3.1299 -0.7209 -1.2496 37 1 1.2129 -2.7329 1.0381 38 1 3.3521 -1.6292 5.9645 39 1 4.4616 -1.6513 4.5668 40 1 6.1059 -2.5720 5.8681 41 1 5.0073 -2.5096 7.2796 42 1 6.8883 -4.7822 5.3770 43 1 5.6944 -6.0646 5.0648 44 1 5.6344 -4.5473 4.1357 45 1 6.1627 -4.8302 7.8653 46 1 4.4359 -4.6266 8.2459 47 1 4.7148 -6.8720 6.5563 48 1 4.4627 -10.1415 7.1674 49 1 2.7784 -4.4014 6.5859 50 1 3.2675 -5.4595 5.2246 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754700161.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:35:47 Heat of formation + Delta-G solvation = 33.209680 kcal Electronic energy + Delta-G solvation = -29430.070253 eV Core-core repulsion = 25460.889693 eV Total energy + Delta-G solvation = -3969.180560 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -45.30286 -40.08600 -37.99763 -37.78923 -34.86332 -34.10308 -32.63547 -31.16160 -30.41409 -29.17981 -27.94659 -27.80127 -26.92877 -25.83295 -24.23694 -23.45462 -23.16407 -21.96381 -21.21806 -18.96902 -18.67317 -17.99648 -17.47337 -17.19622 -16.58708 -15.88121 -15.51782 -15.08956 -14.63134 -14.54399 -14.49508 -14.34337 -13.92931 -13.87329 -13.60423 -13.37089 -12.94740 -12.87555 -12.82175 -12.52095 -12.34328 -12.18692 -12.11626 -11.97065 -11.75156 -11.60541 -11.58228 -11.39685 -11.24052 -10.98970 -10.79495 -10.62980 -10.51603 -10.44261 -10.30092 -10.18601 -9.93953 -9.70016 -9.60387 -8.85458 -8.62474 -6.89751 -5.73147 -3.02260 0.95032 1.47225 2.58438 2.80925 3.13121 3.46269 3.50451 3.51793 3.76782 3.98471 4.32828 4.36382 4.50428 4.60909 4.74467 4.76209 4.79378 4.98884 5.01807 5.06030 5.11110 5.18378 5.26409 5.35959 5.36776 5.37560 5.44378 5.47914 5.58800 5.61400 5.67611 5.69169 5.75598 5.78612 5.80477 5.90579 6.03717 6.06858 6.12027 6.14068 6.29093 6.40131 6.52401 6.67694 6.77686 6.86221 7.48389 7.71994 7.76915 8.07330 8.45289 9.56429 10.13640 10.48214 11.49479 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.027765 B = 0.002204 C = 0.002117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1008.207417 B =12700.077647 C =13225.267098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.016 3.984 3 C -0.148 4.148 4 C -0.143 4.143 5 C -0.024 4.024 6 C -0.178 4.178 7 C -0.014 4.014 8 C 0.609 3.391 9 O -0.522 6.522 10 N -0.603 5.603 11 C 0.101 3.899 12 C -0.124 4.124 13 C -0.078 4.078 14 C -0.129 4.129 15 C 0.169 3.831 16 N -0.731 5.731 17 C -0.241 4.241 18 H 0.069 0.931 19 C -0.013 4.013 20 N -0.932 5.932 21 Si 0.907 3.093 22 H -0.286 1.286 23 H -0.291 1.291 24 H -0.286 1.286 25 C 0.121 3.879 26 N -0.331 5.331 27 O 0.120 5.880 28 H 0.062 0.938 29 H 0.071 0.929 30 H 0.064 0.936 31 H 0.064 0.936 32 H 0.068 0.932 33 H 0.064 0.936 34 H 0.064 0.936 35 H 0.071 0.929 36 H 0.062 0.938 37 H 0.179 0.821 38 H 0.066 0.934 39 H 0.084 0.916 40 H 0.076 0.924 41 H 0.080 0.920 42 H 0.055 0.945 43 H 0.071 0.929 44 H 0.042 0.958 45 H 0.025 0.975 46 H 0.022 0.978 47 H 0.385 0.615 48 H 0.256 0.744 49 H 0.079 0.921 50 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.320 24.500 -16.790 30.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.015 3.985 3 C -0.205 4.205 4 C -0.200 4.200 5 C -0.087 4.087 6 C -0.201 4.201 7 C -0.173 4.173 8 C 0.395 3.605 9 O -0.396 6.396 10 N -0.336 5.336 11 C -0.022 4.022 12 C -0.162 4.162 13 C -0.080 4.080 14 C -0.187 4.187 15 C 0.041 3.959 16 N -0.376 5.376 17 C -0.372 4.372 18 H 0.087 0.913 19 C -0.209 4.209 20 N -0.581 5.581 21 Si 0.738 3.262 22 H -0.213 1.213 23 H -0.217 1.217 24 H -0.213 1.213 25 C 0.000 4.000 26 N -0.032 5.032 27 O 0.046 5.954 28 H 0.081 0.919 29 H 0.090 0.910 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.087 0.913 33 H 0.083 0.917 34 H 0.083 0.917 35 H 0.090 0.910 36 H 0.081 0.919 37 H 0.196 0.804 38 H 0.085 0.915 39 H 0.102 0.898 40 H 0.095 0.905 41 H 0.099 0.901 42 H 0.074 0.926 43 H 0.090 0.910 44 H 0.061 0.939 45 H 0.042 0.958 46 H 0.040 0.960 47 H 0.220 0.780 48 H 0.066 0.934 49 H 0.097 0.903 50 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -4.886 24.271 -15.861 29.403 hybrid contribution -0.399 -1.244 0.188 1.320 sum -5.285 23.028 -15.672 28.352 Atomic orbital electron populations 1.21957 0.91975 1.03105 1.02933 1.19199 0.96139 0.95326 0.87853 1.21912 1.01961 0.93663 1.02948 1.21960 1.01863 1.00742 0.95430 1.24426 0.96732 0.93546 0.93972 1.22351 1.04698 0.96793 0.96242 1.23485 1.01665 0.94307 0.97816 1.16432 0.79420 0.85230 0.79402 1.90834 1.45779 1.32330 1.70680 1.48650 1.48841 1.15355 1.20801 1.22259 0.93660 0.88818 0.97496 1.22604 0.98303 0.95213 1.00121 1.21865 0.94240 0.94017 0.97840 1.21698 0.98350 1.02074 0.96533 1.20628 0.97886 0.86038 0.91326 1.42407 1.84493 1.00193 1.10510 1.19161 1.39874 0.88726 0.89435 0.91253 1.24743 1.02547 0.96793 0.96843 1.69646 1.54313 1.11276 1.22819 0.86269 0.77792 0.79886 0.82223 1.21305 1.21731 1.21327 1.22679 0.96041 0.89794 0.91521 1.74251 1.18446 1.00470 1.10069 1.84778 1.50967 1.35400 1.24249 0.91900 0.90962 0.91686 0.91692 0.91300 0.91707 0.91672 0.90965 0.91865 0.80398 0.91540 0.89806 0.90491 0.90122 0.92582 0.91020 0.93858 0.95768 0.96039 0.78022 0.93428 0.90265 0.88956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.69 8.36 37.16 0.31 -0.38 16 2 C 0.02 0.09 0.94 -155.66 -0.15 -0.05 16 3 C -0.15 -0.69 8.07 37.16 0.30 -0.39 16 4 C -0.14 -0.70 8.36 37.16 0.31 -0.39 16 5 C -0.02 -0.21 5.76 -35.35 -0.20 -0.41 16 6 C -0.18 -1.98 10.40 -39.07 -0.41 -2.38 16 7 C -0.01 -0.19 7.04 -82.52 -0.58 -0.77 16 8 C 0.61 10.27 7.92 -12.11 -0.10 10.17 16 9 O -0.52 -10.39 17.16 5.37 0.09 -10.30 16 10 N -0.60 -9.58 3.19 -170.70 -0.54 -10.12 16 11 C 0.10 1.31 6.29 -2.98 -0.02 1.29 16 12 C -0.12 -1.60 6.09 -25.36 -0.15 -1.75 16 13 C -0.08 -1.29 0.65 -152.64 -0.10 -1.39 16 14 C -0.13 -2.19 8.33 37.16 0.31 -1.88 16 15 C 0.17 3.35 5.11 -4.04 -0.02 3.33 16 16 N -0.73 -18.38 5.16 -59.91 -0.31 -18.69 16 17 C -0.24 -6.75 9.99 -15.06 -0.15 -6.90 16 18 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 19 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16 20 N -0.93 -28.56 13.06 55.49 0.72 -27.84 16 21 Si 0.91 22.66 29.55 -169.99 -5.02 17.64 16 22 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 23 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 24 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 25 C 0.12 2.11 5.67 -2.13 -0.01 2.10 16 26 N -0.33 -4.19 9.41 33.30 0.31 -3.87 16 27 O 0.12 1.27 10.65 17.24 0.18 1.46 16 28 H 0.06 0.33 8.14 -51.92 -0.42 -0.10 16 29 H 0.07 0.23 8.14 -51.93 -0.42 -0.19 16 30 H 0.06 0.33 8.03 -51.93 -0.42 -0.09 16 31 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.07 0.22 8.14 -51.93 -0.42 -0.20 16 33 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 34 H 0.06 0.34 8.02 -51.93 -0.42 -0.08 16 35 H 0.07 0.24 8.14 -51.93 -0.42 -0.18 16 36 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 37 H 0.18 1.75 8.06 -52.49 -0.42 1.33 16 38 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 39 H 0.08 1.06 6.24 -51.93 -0.32 0.74 16 40 H 0.08 0.90 7.86 -51.93 -0.41 0.49 16 41 H 0.08 0.95 7.85 -51.93 -0.41 0.54 16 42 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 43 H 0.07 1.41 6.69 -51.93 -0.35 1.07 16 44 H 0.04 0.70 8.07 -51.93 -0.42 0.28 16 45 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 46 H 0.02 0.43 8.10 -51.93 -0.42 0.01 16 47 H 0.39 10.25 6.22 -40.82 -0.25 10.00 16 48 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 49 H 0.08 1.39 8.02 -51.93 -0.42 0.98 16 50 H 0.09 1.86 7.76 -51.93 -0.40 1.46 16 LS Contribution 402.45 15.07 6.06 6.06 Total: -1.00 -33.05 402.45 -7.68 -40.73 By element: Atomic # 1 Polarization: 13.64 SS G_CDS: -8.43 Total: 5.21 kcal Atomic # 6 Polarization: 0.47 SS G_CDS: -0.75 Total: -0.28 kcal Atomic # 7 Polarization: -60.71 SS G_CDS: 0.18 Total: -60.52 kcal Atomic # 8 Polarization: -9.12 SS G_CDS: 0.28 Total: -8.84 kcal Atomic # 14 Polarization: 22.66 SS G_CDS: -5.02 Total: 17.64 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -33.05 -7.68 -40.73 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754700161.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.942 kcal (2) G-P(sol) polarization free energy of solvation -33.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.732 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds