Wall clock time and date at job start Tue Mar 31 2020 19:35:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47369 * 2 1 4 4 C 1.53005 * 109.46785 * 239.99878 * 2 1 3 5 5 C 1.50701 * 109.47287 * 120.00036 * 2 1 3 6 6 C 1.35319 * 126.66411 * 60.28224 * 5 2 1 7 7 C 1.42276 * 103.92117 * 180.15212 * 6 5 2 8 8 C 1.48325 * 126.93850 * 179.88569 * 7 6 5 9 9 O 1.21496 * 120.00123 * 359.71158 * 8 7 6 10 10 N 1.34780 * 120.00260 * 179.71055 * 8 7 6 11 11 C 1.47485 * 127.02713 * 359.97438 * 10 8 7 12 12 C 1.54007 * 107.08191 * 205.48047 * 11 10 8 13 13 C 1.54614 * 105.04342 * 358.69964 * 12 11 10 14 14 C 1.52996 * 110.74189 * 96.48562 * 13 12 11 15 15 C 1.53007 * 110.73891 * 219.81218 * 13 12 11 16 16 N 1.46501 * 109.47034 * 179.97438 * 15 13 12 17 17 C 1.36938 * 119.99566 * 179.97438 * 16 15 13 18 18 H 1.07997 * 120.00130 * 0.02562 * 17 16 15 19 19 C 1.38812 * 119.99868 * 179.97438 * 17 16 15 20 20 N 1.31620 * 120.00166 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 120.00089 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.46786 * 60.00606 * 21 19 17 23 23 H 1.48497 * 109.46968 * 180.02562 * 21 19 17 24 24 H 1.48498 * 109.47262 * 300.00450 * 21 19 17 25 25 C 1.48114 * 127.03757 * 180.02562 * 10 8 7 26 26 N 1.30990 * 106.12039 * 359.62666 * 7 6 5 27 27 O 1.20902 * 111.44130 * 0.24147 * 26 7 6 28 28 H 1.09011 * 109.46857 * 300.00145 * 1 2 3 29 29 H 1.09001 * 109.47243 * 59.99656 * 1 2 3 30 30 H 1.08994 * 109.47274 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47277 * 180.02562 * 3 2 1 32 32 H 1.09000 * 109.46701 * 300.00308 * 3 2 1 33 33 H 1.08998 * 109.47049 * 60.00088 * 3 2 1 34 34 H 1.08994 * 109.47145 * 299.99994 * 4 2 1 35 35 H 1.09001 * 109.46849 * 60.00225 * 4 2 1 36 36 H 1.09003 * 109.47008 * 179.97438 * 4 2 1 37 37 H 1.08002 * 128.04293 * 0.02562 * 6 5 2 38 38 H 1.09003 * 109.91439 * 86.12402 * 11 10 8 39 39 H 1.08996 * 110.08042 * 324.93238 * 11 10 8 40 40 H 1.09004 * 110.32648 * 117.59017 * 12 11 10 41 41 H 1.09002 * 110.32949 * 239.80336 * 12 11 10 42 42 H 1.09000 * 109.47351 * 60.00268 * 14 13 12 43 43 H 1.09005 * 109.47377 * 179.97438 * 14 13 12 44 44 H 1.08993 * 109.47288 * 299.99900 * 14 13 12 45 45 H 1.08998 * 109.46797 * 299.99960 * 15 13 12 46 46 H 1.08997 * 109.46926 * 59.99882 * 15 13 12 47 47 H 0.96995 * 120.00232 * 359.97438 * 16 15 13 48 48 H 0.96994 * 120.00565 * 179.97438 * 20 19 17 49 49 H 1.08998 * 110.66152 * 259.11548 * 25 10 8 50 50 H 1.08999 * 110.65867 * 22.06282 * 25 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 2.0324 -0.7104 1.2304 6 6 1.7944 -1.9974 1.5742 7 6 2.4859 -2.1558 2.8075 8 6 2.5596 -3.3833 3.6369 9 8 1.9849 -4.3927 3.2804 10 7 3.2640 -3.3790 4.7859 11 6 4.0164 -2.2490 5.3622 12 6 5.1230 -2.8481 6.2500 13 6 4.9232 -4.3788 6.1622 14 6 5.8518 -4.9869 5.1091 15 6 5.1468 -5.0336 7.5268 16 7 4.9503 -6.4808 7.4121 17 6 5.0990 -7.2813 8.5132 18 1 5.3608 -6.8457 9.4661 19 6 4.9123 -8.6525 8.4047 20 7 4.5928 -9.1834 7.2434 21 14 5.1159 -9.7446 9.9065 22 1 4.1466 -9.3324 10.9532 23 1 4.8649 -11.1585 9.5280 24 1 6.4984 -9.6112 10.4318 25 6 3.4417 -4.5083 5.7276 26 7 3.0489 -1.0003 3.0597 27 8 2.8055 -0.1917 2.1944 28 1 -0.3633 0.5139 0.8901 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 3.1301 1.4425 -0.0005 32 1 1.6766 1.9563 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 1.6766 -1.7489 -1.2493 35 1 1.6765 -0.2074 -2.1392 36 1 3.1299 -0.7209 -1.2496 37 1 1.2129 -2.7329 1.0381 38 1 3.3521 -1.6292 5.9645 39 1 4.4616 -1.6513 4.5668 40 1 6.1059 -2.5720 5.8681 41 1 5.0073 -2.5096 7.2796 42 1 6.8883 -4.7822 5.3770 43 1 5.6944 -6.0646 5.0648 44 1 5.6344 -4.5473 4.1357 45 1 6.1627 -4.8302 7.8653 46 1 4.4359 -4.6266 8.2459 47 1 4.7148 -6.8720 6.5563 48 1 4.4627 -10.1415 7.1674 49 1 2.7784 -4.4014 6.5859 50 1 3.2675 -5.4595 5.2246 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754700161.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:35:46 Heat of formation + Delta-G solvation = 13.485807 kcal Electronic energy + Delta-G solvation = -29430.925544 eV Core-core repulsion = 25460.889693 eV Total energy + Delta-G solvation = -3970.035851 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -46.23825 -41.40302 -39.38484 -38.28794 -36.57253 -35.19065 -34.28615 -32.32280 -31.89794 -30.53428 -28.57138 -28.16624 -28.07078 -27.50747 -25.71730 -24.54397 -24.28084 -23.41753 -22.05736 -20.30217 -19.94206 -19.02069 -18.92250 -18.35449 -17.74669 -17.26032 -16.79851 -16.50785 -15.82579 -15.68200 -15.49168 -15.23571 -15.09025 -14.96915 -14.84118 -14.63095 -14.59389 -13.99875 -13.70172 -13.57215 -13.27306 -13.21018 -13.05478 -12.99166 -12.81979 -12.71276 -12.55513 -12.55098 -12.24207 -12.19225 -12.09383 -12.01257 -11.81516 -11.78701 -11.63692 -11.58033 -11.51205 -11.42691 -10.92876 -10.49250 -9.93666 -8.98548 -7.93628 -5.22543 -0.05014 0.57982 1.46565 1.49792 1.51067 1.56047 1.89145 1.90702 2.56209 2.69749 3.20755 3.38710 3.46330 3.53210 3.78742 3.79438 3.88291 3.91698 3.96117 4.11889 4.17863 4.22238 4.27085 4.31401 4.37835 4.58256 4.62088 4.69114 4.76395 4.78683 4.81246 4.83384 4.89983 4.90443 4.96090 5.00111 5.01726 5.02352 5.07350 5.10812 5.21110 5.27676 5.30367 5.39484 5.40078 5.44276 5.50689 6.22319 6.27653 6.66691 6.96206 7.34162 8.10652 8.32785 9.29880 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.027765 B = 0.002204 C = 0.002117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1008.207417 B =12700.077647 C =13225.267098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.017 3.983 3 C -0.147 4.147 4 C -0.143 4.143 5 C -0.001 4.001 6 C -0.191 4.191 7 C -0.038 4.038 8 C 0.603 3.397 9 O -0.566 6.566 10 N -0.603 5.603 11 C 0.103 3.897 12 C -0.112 4.112 13 C -0.071 4.071 14 C -0.121 4.121 15 C 0.168 3.832 16 N -0.745 5.745 17 C -0.242 4.242 18 H 0.080 0.920 19 C -0.079 4.079 20 N -0.972 5.972 21 Si 0.975 3.025 22 H -0.278 1.278 23 H -0.299 1.299 24 H -0.276 1.276 25 C 0.124 3.876 26 N -0.335 5.335 27 O 0.133 5.867 28 H 0.058 0.942 29 H 0.094 0.906 30 H 0.059 0.941 31 H 0.061 0.939 32 H 0.089 0.911 33 H 0.062 0.938 34 H 0.059 0.941 35 H 0.094 0.906 36 H 0.057 0.943 37 H 0.184 0.816 38 H 0.082 0.918 39 H 0.092 0.908 40 H 0.098 0.902 41 H 0.101 0.899 42 H 0.071 0.929 43 H 0.034 0.966 44 H 0.048 0.952 45 H 0.035 0.965 46 H 0.030 0.970 47 H 0.373 0.627 48 H 0.250 0.750 49 H 0.076 0.924 50 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.852 27.728 -16.953 32.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.016 3.984 3 C -0.205 4.205 4 C -0.200 4.200 5 C -0.065 4.065 6 C -0.214 4.214 7 C -0.195 4.195 8 C 0.391 3.609 9 O -0.444 6.444 10 N -0.335 5.335 11 C -0.019 4.019 12 C -0.150 4.150 13 C -0.072 4.072 14 C -0.179 4.179 15 C 0.042 3.958 16 N -0.388 5.388 17 C -0.373 4.373 18 H 0.097 0.903 19 C -0.271 4.271 20 N -0.623 5.623 21 Si 0.804 3.196 22 H -0.204 1.204 23 H -0.225 1.225 24 H -0.202 1.202 25 C 0.002 3.998 26 N -0.034 5.034 27 O 0.056 5.944 28 H 0.077 0.923 29 H 0.113 0.887 30 H 0.078 0.922 31 H 0.080 0.920 32 H 0.108 0.892 33 H 0.081 0.919 34 H 0.078 0.922 35 H 0.113 0.887 36 H 0.076 0.924 37 H 0.202 0.798 38 H 0.100 0.900 39 H 0.111 0.889 40 H 0.116 0.884 41 H 0.119 0.881 42 H 0.090 0.910 43 H 0.053 0.947 44 H 0.067 0.933 45 H 0.053 0.947 46 H 0.047 0.953 47 H 0.206 0.794 48 H 0.058 0.942 49 H 0.094 0.906 50 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -4.385 27.562 -15.974 32.157 hybrid contribution -0.562 -2.115 0.175 2.195 sum -4.948 25.447 -15.799 30.358 Atomic orbital electron populations 1.21989 0.91018 1.03096 1.03876 1.19444 0.96754 0.95841 0.86351 1.21940 1.01823 0.92744 1.03953 1.21993 1.01589 1.00677 0.95768 1.25026 0.94748 0.92809 0.93896 1.22493 1.05232 0.98009 0.95690 1.23197 1.03809 0.93760 0.98746 1.16872 0.78706 0.85751 0.79574 1.90796 1.47640 1.34188 1.71808 1.48716 1.48774 1.15630 1.20404 1.22430 0.93690 0.87958 0.97847 1.22604 0.99318 0.91537 1.01530 1.21729 0.93102 0.96598 0.95764 1.21602 0.99368 0.99722 0.97166 1.20801 0.98322 0.83293 0.93408 1.42641 1.84374 1.02408 1.09371 1.19623 1.37977 0.89289 0.90451 0.90251 1.25601 1.03470 0.98441 0.99632 1.69830 1.56438 1.10992 1.25060 0.85191 0.78175 0.77371 0.78898 1.20368 1.22534 1.20200 1.22470 0.97031 0.88963 0.91380 1.74216 1.18427 1.00045 1.10738 1.84755 1.50683 1.34804 1.24205 0.92297 0.88714 0.92233 0.91965 0.89187 0.91908 0.92238 0.88707 0.92359 0.79830 0.90009 0.88938 0.88381 0.88082 0.91047 0.94677 0.93312 0.94748 0.95253 0.79405 0.94161 0.90562 0.92771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.05 8.36 71.98 0.60 -0.45 16 2 C 0.02 0.16 0.94 -52.93 -0.05 0.11 16 3 C -0.15 -0.96 8.07 71.98 0.58 -0.38 16 4 C -0.14 -1.09 8.36 71.98 0.60 -0.48 16 5 C 0.00 -0.02 5.76 25.01 0.14 0.12 16 6 C -0.19 -4.20 10.40 22.60 0.24 -3.96 16 7 C -0.04 -1.05 7.04 42.96 0.30 -0.75 16 8 C 0.60 21.06 7.92 86.93 0.69 21.75 16 9 O -0.57 -24.01 17.16 -3.70 -0.06 -24.08 16 10 N -0.60 -19.34 3.19 -812.27 -2.59 -21.93 16 11 C 0.10 2.48 6.29 86.53 0.54 3.02 16 12 C -0.11 -2.57 6.09 31.48 0.19 -2.38 16 13 C -0.07 -2.29 0.65 -50.97 -0.03 -2.32 16 14 C -0.12 -4.14 8.33 71.98 0.60 -3.54 16 15 C 0.17 6.53 5.11 86.38 0.44 6.97 16 16 N -0.74 -38.15 5.16 -343.44 -1.77 -39.92 16 17 C -0.24 -13.60 9.99 84.03 0.84 -12.76 16 18 H 0.08 4.22 7.83 -2.91 -0.02 4.20 16 19 C -0.08 -4.67 5.50 84.86 0.47 -4.20 16 20 N -0.97 -61.55 13.06 21.65 0.28 -61.27 16 21 Si 0.97 47.10 29.55 68.60 2.03 49.13 16 22 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 23 H -0.30 -14.68 7.11 99.48 0.71 -13.97 16 24 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 25 C 0.12 4.48 5.67 86.73 0.49 4.97 16 26 N -0.33 -8.08 9.41 -49.51 -0.47 -8.54 16 27 O 0.13 2.59 10.65 71.88 0.77 3.36 16 28 H 0.06 0.49 8.14 -2.38 -0.02 0.48 16 29 H 0.09 0.30 8.14 -2.39 -0.02 0.28 16 30 H 0.06 0.52 8.03 -2.39 -0.02 0.50 16 31 H 0.06 0.46 8.14 -2.39 -0.02 0.44 16 32 H 0.09 0.24 8.14 -2.39 -0.02 0.22 16 33 H 0.06 0.45 8.14 -2.39 -0.02 0.43 16 34 H 0.06 0.53 8.02 -2.39 -0.02 0.51 16 35 H 0.09 0.32 8.14 -2.39 -0.02 0.30 16 36 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 37 H 0.18 3.69 8.06 -2.91 -0.02 3.67 16 38 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 39 H 0.09 2.13 6.24 -2.39 -0.01 2.11 16 40 H 0.10 1.92 7.86 -2.39 -0.02 1.90 16 41 H 0.10 1.99 7.85 -2.39 -0.02 1.97 16 42 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 43 H 0.03 1.44 6.69 -2.38 -0.02 1.43 16 44 H 0.05 1.58 8.07 -2.39 -0.02 1.56 16 45 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 46 H 0.03 1.12 8.10 -2.39 -0.02 1.10 16 47 H 0.37 20.81 6.22 -92.71 -0.58 20.23 16 48 H 0.25 15.41 8.31 -92.71 -0.77 14.64 16 49 H 0.08 2.76 8.02 -2.39 -0.02 2.74 16 50 H 0.05 2.37 7.76 -2.39 -0.02 2.35 16 Total: -1.00 -74.13 402.45 5.18 -68.95 By element: Atomic # 1 Polarization: 28.23 SS G_CDS: 0.35 Total: 28.58 kcal Atomic # 6 Polarization: -0.92 SS G_CDS: 6.65 Total: 5.73 kcal Atomic # 7 Polarization: -127.12 SS G_CDS: -4.54 Total: -131.67 kcal Atomic # 8 Polarization: -21.42 SS G_CDS: 0.70 Total: -20.72 kcal Atomic # 14 Polarization: 47.10 SS G_CDS: 2.03 Total: 49.13 kcal Total: -74.13 5.18 -68.95 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754700161.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.437 kcal (2) G-P(sol) polarization free energy of solvation -74.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.951 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds