Wall clock time and date at job start Tue Mar 31 2020 19:26:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 110.21965 * 2 1 4 4 C 1.53004 * 109.47000 * 299.52288 * 3 2 1 5 5 C 1.50700 * 109.47208 * 179.97438 * 4 3 2 6 6 O 1.21283 * 119.99803 * 359.97438 * 5 4 3 7 7 N 1.34777 * 119.99675 * 180.27843 * 5 4 3 8 8 C 1.46751 * 125.33608 * 359.41492 * 7 5 4 9 9 C 1.54165 * 106.58682 * 161.46278 * 8 7 5 10 10 H 1.08998 * 113.23056 * 151.13821 * 9 8 7 11 11 C 1.55510 * 110.00106 * 278.72510 * 9 8 7 12 12 N 1.46667 * 108.13998 * 126.67814 * 11 9 8 13 13 C 1.36930 * 125.33200 * 180.64684 * 12 11 9 14 14 H 1.08000 * 119.99526 * 180.02562 * 13 12 11 15 15 C 1.38815 * 120.00235 * 0.04835 * 13 12 11 16 16 N 1.31615 * 120.00004 * 359.97438 * 15 13 12 17 17 Si 1.86802 * 119.99876 * 179.97438 * 15 13 12 18 18 H 1.48493 * 109.47330 * 359.97438 * 17 15 13 19 19 H 1.48490 * 109.47240 * 119.99789 * 17 15 13 20 20 H 1.48506 * 109.46902 * 239.99659 * 17 15 13 21 21 C 1.46758 * 109.32668 * 0.68536 * 12 11 9 22 22 C 1.53976 * 106.68594 * 341.55802 * 21 12 11 23 23 H 1.08993 * 112.80235 * 151.33318 * 22 21 12 24 24 C 1.46656 * 125.33100 * 179.72799 * 7 5 4 25 25 C 1.54484 * 110.31880 * 121.97689 * 2 1 3 26 26 C 1.54635 * 101.76408 * 144.45518 * 25 2 1 27 27 C 1.51278 * 104.19673 * 335.20165 * 26 25 2 28 28 O 1.21274 * 124.94296 * 196.23335 * 27 26 25 29 29 N 1.34426 * 110.11549 * 16.25267 * 27 26 25 30 30 H 1.09000 * 109.46636 * 60.00322 * 1 2 3 31 31 H 1.09005 * 109.46789 * 179.97438 * 1 2 3 32 32 H 1.08992 * 109.46981 * 300.00364 * 1 2 3 33 33 H 1.09000 * 109.47849 * 179.52206 * 3 2 1 34 34 H 1.08998 * 109.47443 * 59.52073 * 3 2 1 35 35 H 1.09009 * 109.46730 * 59.99606 * 4 3 2 36 36 H 1.08998 * 109.46846 * 300.00150 * 4 3 2 37 37 H 1.08999 * 110.01861 * 280.88702 * 8 7 5 38 38 H 1.08996 * 110.01736 * 42.27670 * 8 7 5 39 39 H 1.08999 * 109.70126 * 6.98798 * 11 9 8 40 40 H 1.09002 * 109.67857 * 246.35669 * 11 9 8 41 41 H 0.96999 * 119.99971 * 180.02562 * 16 15 13 42 42 H 1.09005 * 110.01383 * 222.24761 * 21 12 11 43 43 H 1.08997 * 110.05290 * 100.89023 * 21 12 11 44 44 H 1.09004 * 109.76832 * 300.30835 * 24 7 5 45 45 H 1.09002 * 109.77028 * 61.04052 * 24 7 5 46 46 H 1.08998 * 110.96899 * 262.57506 * 25 2 1 47 47 H 1.08995 * 110.97116 * 26.33813 * 25 2 1 48 48 H 1.08998 * 110.48498 * 216.52351 * 26 25 2 49 49 H 1.08999 * 110.59742 * 93.94049 * 26 25 2 50 50 H 0.96996 * 124.34932 * 180.39026 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0588 1.4357 0.0000 4 6 1.5680 2.1599 -1.2552 5 6 2.0883 3.5743 -1.2550 6 8 2.7829 3.9647 -0.3406 7 7 1.7767 4.4070 -2.2678 8 6 0.9534 4.0576 -3.4313 9 6 0.4816 5.3876 -4.0520 10 1 0.3099 5.3236 -5.1265 11 6 -0.7470 5.9332 -3.2701 12 7 -0.4555 7.3128 -2.8666 13 6 -1.2945 8.1216 -2.1476 14 1 -0.9913 9.1275 -1.8972 15 6 -2.5343 7.6485 -1.7403 16 7 -2.9037 6.4227 -2.0455 17 14 -3.6785 8.7518 -0.7588 18 1 -3.0326 10.0722 -0.5479 19 1 -4.9493 8.9354 -1.5046 20 1 -3.9628 8.1245 0.5569 21 6 0.8759 7.6907 -3.3549 22 6 1.6172 6.3800 -3.6767 23 1 2.3587 6.4972 -4.4669 24 6 2.2127 5.8026 -2.3831 25 6 2.0664 -0.7672 1.2289 26 6 3.3310 -1.4438 0.6508 27 6 3.0536 -1.5424 -0.8331 28 8 3.6597 -2.2523 -1.6073 29 7 2.0379 -0.7283 -1.1686 30 1 -0.3632 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5139 0.8899 33 1 3.1487 1.4216 0.0086 34 1 1.6953 1.9568 0.8856 35 1 0.4780 2.1740 -1.2638 36 1 1.9315 1.6388 -2.1409 37 1 1.5466 3.4958 -4.1529 38 1 0.0927 3.4681 -3.1158 39 1 -0.9220 5.3197 -2.3863 40 1 -1.6280 5.9150 -3.9117 41 1 -3.7702 6.0923 -1.7612 42 1 1.4129 8.2436 -2.5842 43 1 0.7851 8.2987 -4.2550 44 1 1.8545 6.3727 -1.5258 45 1 3.3009 5.8465 -2.4263 46 1 2.3252 -0.0806 2.0349 47 1 1.3465 -1.5117 1.5687 48 1 3.4630 -2.4366 1.0810 49 1 4.2125 -0.8294 0.8342 50 1 1.6861 -0.6341 -2.0676 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754848005.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:26:08 Heat of formation + Delta-G solvation = -49.732154 kcal Electronic energy + Delta-G solvation = -30117.324488 eV Core-core repulsion = 26144.547300 eV Total energy + Delta-G solvation = -3972.777188 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -40.97564 -40.08049 -38.28602 -37.32697 -34.93838 -33.14447 -32.29110 -31.62725 -30.22308 -30.10300 -29.31874 -26.25179 -25.59289 -25.15872 -23.86258 -22.59632 -21.04544 -20.32971 -20.10005 -19.45524 -18.89837 -17.36875 -16.97280 -16.73580 -16.29704 -15.98598 -15.44764 -15.19399 -14.90055 -14.52332 -14.21792 -13.91228 -13.80805 -13.72347 -13.38371 -13.14882 -12.90176 -12.78055 -12.66882 -12.38925 -12.33860 -12.15645 -12.01220 -11.79515 -11.62289 -11.44646 -11.34218 -11.12150 -10.94913 -10.86540 -10.81302 -10.41961 -10.15408 -10.10485 -10.07168 -9.87817 -9.68847 -9.60596 -9.36118 -8.66172 -8.31142 -6.88143 -5.78129 -3.10748 2.39836 2.85063 3.09448 3.23902 3.36076 3.42331 3.44107 3.99541 4.15552 4.33906 4.45194 4.55682 4.67919 4.75725 4.84984 4.95208 5.02963 5.09871 5.22267 5.23667 5.28426 5.38900 5.42107 5.44135 5.47222 5.49910 5.61138 5.65225 5.69050 5.70400 5.76849 5.78452 5.92632 6.01414 6.05220 6.16835 6.18123 6.30562 6.49013 6.53017 6.59625 6.64961 6.79040 6.81286 7.49927 7.50698 7.74969 7.79842 8.04327 8.20777 8.39132 9.17223 9.77442 10.41025 11.33708 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.015129 B = 0.002885 C = 0.002637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1850.361769 B = 9704.091071 C =10614.528104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.155 3.845 3 C -0.106 4.106 4 C -0.137 4.137 5 C 0.527 3.473 6 O -0.550 6.550 7 N -0.605 5.605 8 C 0.113 3.887 9 C -0.127 4.127 10 H 0.093 0.907 11 C 0.189 3.811 12 N -0.602 5.602 13 C -0.226 4.226 14 H 0.079 0.921 15 C -0.008 4.008 16 N -0.922 5.922 17 Si 0.912 3.088 18 H -0.280 1.280 19 H -0.290 1.290 20 H -0.291 1.291 21 C 0.145 3.855 22 C -0.112 4.112 23 H 0.088 0.912 24 C 0.122 3.878 25 C -0.123 4.123 26 C -0.158 4.158 27 C 0.520 3.480 28 O -0.541 6.541 29 N -0.720 5.720 30 H 0.068 0.932 31 H 0.063 0.937 32 H 0.077 0.923 33 H 0.074 0.926 34 H 0.087 0.913 35 H 0.099 0.901 36 H 0.087 0.913 37 H 0.059 0.941 38 H 0.076 0.924 39 H 0.049 0.951 40 H 0.044 0.956 41 H 0.251 0.749 42 H 0.038 0.962 43 H 0.020 0.980 44 H 0.075 0.925 45 H 0.056 0.944 46 H 0.094 0.906 47 H 0.085 0.915 48 H 0.100 0.900 49 H 0.105 0.895 50 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.261 -13.727 1.633 16.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.069 3.931 3 C -0.145 4.145 4 C -0.177 4.177 5 C 0.316 3.684 6 O -0.428 6.428 7 N -0.338 5.338 8 C -0.010 4.010 9 C -0.147 4.147 10 H 0.111 0.889 11 C 0.064 3.936 12 N -0.328 5.328 13 C -0.355 4.355 14 H 0.097 0.903 15 C -0.204 4.204 16 N -0.570 5.570 17 Si 0.743 3.257 18 H -0.205 1.205 19 H -0.217 1.217 20 H -0.218 1.218 21 C 0.018 3.982 22 C -0.132 4.132 23 H 0.106 0.894 24 C 0.000 4.000 25 C -0.161 4.161 26 C -0.198 4.198 27 C 0.307 3.693 28 O -0.418 6.418 29 N -0.376 5.376 30 H 0.086 0.914 31 H 0.082 0.918 32 H 0.096 0.904 33 H 0.093 0.907 34 H 0.105 0.895 35 H 0.117 0.883 36 H 0.106 0.894 37 H 0.077 0.923 38 H 0.094 0.906 39 H 0.067 0.933 40 H 0.062 0.938 41 H 0.061 0.939 42 H 0.056 0.944 43 H 0.038 0.962 44 H 0.093 0.907 45 H 0.075 0.925 46 H 0.113 0.887 47 H 0.104 0.896 48 H 0.118 0.882 49 H 0.123 0.877 50 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges 8.803 -13.959 2.004 16.624 hybrid contribution -0.950 0.738 -0.045 1.203 sum 7.853 -13.221 1.958 15.502 Atomic orbital electron populations 1.22172 0.92879 1.02817 1.03827 1.21133 0.94883 0.91780 0.85354 1.21752 1.01897 0.92596 0.98283 1.21679 1.02978 0.92783 1.00282 1.20193 0.80383 0.87092 0.80694 1.90677 1.39317 1.77649 1.35172 1.48185 1.50882 1.12604 1.22115 1.21996 0.94087 0.97874 0.87083 1.23580 0.98062 0.92835 1.00200 0.88872 1.21344 0.90624 0.85410 0.96196 1.44181 1.13653 1.11545 1.63454 1.19095 0.95569 0.94832 1.25957 0.90340 1.24779 0.97778 0.96789 1.01024 1.69949 1.21108 1.15305 1.50665 0.86037 0.80732 0.79523 0.79444 1.20498 1.21745 1.21764 1.21231 0.87209 0.92987 0.96772 1.22859 0.97006 0.97345 0.95986 0.89417 1.21767 0.97861 0.81616 0.98756 1.22700 0.96629 0.99826 0.96898 1.22368 1.00132 1.03883 0.93391 1.20882 0.79013 0.78377 0.91048 1.90754 1.52227 1.41290 1.57566 1.46437 1.36112 1.43620 1.11415 0.91351 0.91800 0.90422 0.90683 0.89466 0.88305 0.89429 0.92292 0.90605 0.93252 0.93794 0.93859 0.94422 0.96235 0.90655 0.92538 0.88743 0.89645 0.88154 0.87710 0.75276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.10 8.46 37.16 0.31 -0.78 16 2 C 0.15 1.17 0.87 -130.90 -0.11 1.06 16 3 C -0.11 -1.05 3.68 -26.73 -0.10 -1.15 16 4 C -0.14 -1.53 4.26 -27.88 -0.12 -1.65 16 5 C 0.53 8.40 7.84 -10.98 -0.09 8.32 16 6 O -0.55 -10.57 16.29 5.55 0.09 -10.48 16 7 N -0.60 -9.72 3.31 -172.23 -0.57 -10.28 16 8 C 0.11 1.58 5.83 -3.30 -0.02 1.56 16 9 C -0.13 -2.08 4.16 -87.39 -0.36 -2.44 16 10 H 0.09 1.35 8.14 -51.93 -0.42 0.93 16 11 C 0.19 4.24 4.86 -2.62 -0.01 4.23 16 12 N -0.60 -14.68 3.38 -170.72 -0.58 -15.25 16 13 C -0.23 -6.14 10.25 -15.06 -0.15 -6.30 16 14 H 0.08 2.08 7.83 -52.49 -0.41 1.67 16 15 C -0.01 -0.21 5.48 -17.43 -0.10 -0.31 16 16 N -0.92 -26.00 10.25 55.49 0.57 -25.43 16 17 Si 0.91 21.73 29.55 -169.99 -5.02 16.71 16 18 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 19 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 20 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 21 C 0.14 2.84 6.40 -3.39 -0.02 2.82 16 22 C -0.11 -1.80 4.03 -88.48 -0.36 -2.16 16 23 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 24 C 0.12 2.08 6.23 -3.61 -0.02 2.06 16 25 C -0.12 -0.76 6.21 -25.09 -0.16 -0.91 16 26 C -0.16 -1.17 6.86 -26.74 -0.18 -1.35 16 27 C 0.52 5.62 8.43 -10.86 -0.09 5.52 16 28 O -0.54 -8.19 18.03 5.56 0.10 -8.09 16 29 N -0.72 -6.21 4.95 -46.61 -0.23 -6.44 16 30 H 0.07 0.49 6.52 -51.93 -0.34 0.15 16 31 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.07 0.82 8.10 -51.93 -0.42 0.40 16 34 H 0.09 0.92 8.10 -51.93 -0.42 0.50 16 35 H 0.10 1.04 6.23 -51.92 -0.32 0.71 16 36 H 0.09 0.84 7.47 -51.93 -0.39 0.45 16 37 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.08 1.03 7.32 -51.93 -0.38 0.65 16 39 H 0.05 1.24 6.80 -51.93 -0.35 0.89 16 40 H 0.04 1.10 7.45 -51.93 -0.39 0.72 16 41 H 0.25 6.89 8.31 -40.82 -0.34 6.55 16 42 H 0.04 0.74 7.79 -51.93 -0.40 0.33 16 43 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 44 H 0.08 1.53 7.48 -51.93 -0.39 1.14 16 45 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 46 H 0.09 0.50 7.89 -51.93 -0.41 0.10 16 47 H 0.08 0.44 7.91 -51.93 -0.41 0.02 16 48 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 49 H 0.10 0.73 8.14 -51.93 -0.42 0.30 16 50 H 0.41 3.22 8.68 -40.82 -0.35 2.86 16 LS Contribution 388.10 15.07 5.85 5.85 Total: -1.00 -34.36 388.10 -9.70 -44.06 By element: Atomic # 1 Polarization: 9.18 SS G_CDS: -8.33 Total: 0.85 kcal Atomic # 6 Polarization: 10.09 SS G_CDS: -1.58 Total: 8.51 kcal Atomic # 7 Polarization: -56.60 SS G_CDS: -0.81 Total: -57.41 kcal Atomic # 8 Polarization: -18.76 SS G_CDS: 0.19 Total: -18.57 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -34.36 -9.70 -44.06 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754848005.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.669 kcal (2) G-P(sol) polarization free energy of solvation -34.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.063 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds