Wall clock time and date at job start Tue Mar 31 2020 19:26:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 110.21965 * 2 1 4 4 C 1.53004 * 109.47000 * 299.52288 * 3 2 1 5 5 C 1.50700 * 109.47208 * 179.97438 * 4 3 2 6 6 O 1.21283 * 119.99803 * 359.97438 * 5 4 3 7 7 N 1.34777 * 119.99675 * 180.27843 * 5 4 3 8 8 C 1.46751 * 125.33608 * 359.41492 * 7 5 4 9 9 C 1.54165 * 106.58682 * 161.46278 * 8 7 5 10 10 H 1.08998 * 113.23056 * 151.13821 * 9 8 7 11 11 C 1.55510 * 110.00106 * 278.72510 * 9 8 7 12 12 N 1.46667 * 108.13998 * 126.67814 * 11 9 8 13 13 C 1.36930 * 125.33200 * 180.64684 * 12 11 9 14 14 H 1.08000 * 119.99526 * 180.02562 * 13 12 11 15 15 C 1.38815 * 120.00235 * 0.04835 * 13 12 11 16 16 N 1.31615 * 120.00004 * 359.97438 * 15 13 12 17 17 Si 1.86802 * 119.99876 * 179.97438 * 15 13 12 18 18 H 1.48493 * 109.47330 * 359.97438 * 17 15 13 19 19 H 1.48490 * 109.47240 * 119.99789 * 17 15 13 20 20 H 1.48506 * 109.46902 * 239.99659 * 17 15 13 21 21 C 1.46758 * 109.32668 * 0.68536 * 12 11 9 22 22 C 1.53976 * 106.68594 * 341.55802 * 21 12 11 23 23 H 1.08993 * 112.80235 * 151.33318 * 22 21 12 24 24 C 1.46656 * 125.33100 * 179.72799 * 7 5 4 25 25 C 1.54484 * 110.31880 * 121.97689 * 2 1 3 26 26 C 1.54635 * 101.76408 * 144.45518 * 25 2 1 27 27 C 1.51278 * 104.19673 * 335.20165 * 26 25 2 28 28 O 1.21274 * 124.94296 * 196.23335 * 27 26 25 29 29 N 1.34426 * 110.11549 * 16.25267 * 27 26 25 30 30 H 1.09000 * 109.46636 * 60.00322 * 1 2 3 31 31 H 1.09005 * 109.46789 * 179.97438 * 1 2 3 32 32 H 1.08992 * 109.46981 * 300.00364 * 1 2 3 33 33 H 1.09000 * 109.47849 * 179.52206 * 3 2 1 34 34 H 1.08998 * 109.47443 * 59.52073 * 3 2 1 35 35 H 1.09009 * 109.46730 * 59.99606 * 4 3 2 36 36 H 1.08998 * 109.46846 * 300.00150 * 4 3 2 37 37 H 1.08999 * 110.01861 * 280.88702 * 8 7 5 38 38 H 1.08996 * 110.01736 * 42.27670 * 8 7 5 39 39 H 1.08999 * 109.70126 * 6.98798 * 11 9 8 40 40 H 1.09002 * 109.67857 * 246.35669 * 11 9 8 41 41 H 0.96999 * 119.99971 * 180.02562 * 16 15 13 42 42 H 1.09005 * 110.01383 * 222.24761 * 21 12 11 43 43 H 1.08997 * 110.05290 * 100.89023 * 21 12 11 44 44 H 1.09004 * 109.76832 * 300.30835 * 24 7 5 45 45 H 1.09002 * 109.77028 * 61.04052 * 24 7 5 46 46 H 1.08998 * 110.96899 * 262.57506 * 25 2 1 47 47 H 1.08995 * 110.97116 * 26.33813 * 25 2 1 48 48 H 1.08998 * 110.48498 * 216.52351 * 26 25 2 49 49 H 1.08999 * 110.59742 * 93.94049 * 26 25 2 50 50 H 0.96996 * 124.34932 * 180.39026 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0588 1.4357 0.0000 4 6 1.5680 2.1599 -1.2552 5 6 2.0883 3.5743 -1.2550 6 8 2.7829 3.9647 -0.3406 7 7 1.7767 4.4070 -2.2678 8 6 0.9534 4.0576 -3.4313 9 6 0.4816 5.3876 -4.0520 10 1 0.3099 5.3236 -5.1265 11 6 -0.7470 5.9332 -3.2701 12 7 -0.4555 7.3128 -2.8666 13 6 -1.2945 8.1216 -2.1476 14 1 -0.9913 9.1275 -1.8972 15 6 -2.5343 7.6485 -1.7403 16 7 -2.9037 6.4227 -2.0455 17 14 -3.6785 8.7518 -0.7588 18 1 -3.0326 10.0722 -0.5479 19 1 -4.9493 8.9354 -1.5046 20 1 -3.9628 8.1245 0.5569 21 6 0.8759 7.6907 -3.3549 22 6 1.6172 6.3800 -3.6767 23 1 2.3587 6.4972 -4.4669 24 6 2.2127 5.8026 -2.3831 25 6 2.0664 -0.7672 1.2289 26 6 3.3310 -1.4438 0.6508 27 6 3.0536 -1.5424 -0.8331 28 8 3.6597 -2.2523 -1.6073 29 7 2.0379 -0.7283 -1.1686 30 1 -0.3632 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5139 0.8899 33 1 3.1487 1.4216 0.0086 34 1 1.6953 1.9568 0.8856 35 1 0.4780 2.1740 -1.2638 36 1 1.9315 1.6388 -2.1409 37 1 1.5466 3.4958 -4.1529 38 1 0.0927 3.4681 -3.1158 39 1 -0.9220 5.3197 -2.3863 40 1 -1.6280 5.9150 -3.9117 41 1 -3.7702 6.0923 -1.7612 42 1 1.4129 8.2436 -2.5842 43 1 0.7851 8.2987 -4.2550 44 1 1.8545 6.3727 -1.5258 45 1 3.3009 5.8465 -2.4263 46 1 2.3252 -0.0806 2.0349 47 1 1.3465 -1.5117 1.5687 48 1 3.4630 -2.4366 1.0810 49 1 4.2125 -0.8294 0.8342 50 1 1.6861 -0.6341 -2.0676 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754848005.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:26:06 Heat of formation + Delta-G solvation = -73.276152 kcal Electronic energy + Delta-G solvation = -30118.345432 eV Core-core repulsion = 26144.547300 eV Total energy + Delta-G solvation = -3973.798132 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.79980 -41.31378 -39.62837 -38.25200 -36.55458 -34.26218 -33.84089 -32.26455 -31.62532 -31.44363 -30.44356 -27.58692 -27.18427 -26.20234 -24.95268 -23.82168 -21.82056 -21.74759 -21.06960 -20.85469 -20.06733 -18.86922 -18.30218 -17.80578 -17.49203 -16.87213 -16.73956 -16.35798 -16.24014 -15.83030 -15.53155 -15.08411 -14.82423 -14.65346 -14.54516 -14.40307 -14.02060 -13.88772 -13.62216 -13.55251 -13.44099 -13.32018 -13.20263 -13.03443 -12.93980 -12.74048 -12.69616 -12.44772 -12.19340 -11.97409 -11.88178 -11.83035 -11.76453 -11.57816 -11.48478 -11.27927 -10.93053 -10.92409 -10.68650 -10.13687 -9.60082 -8.85729 -7.85899 -5.19419 1.44283 1.44974 1.54633 1.58241 1.62415 2.06164 2.40591 2.48263 3.30619 3.33680 3.37720 3.49545 3.55367 3.71208 3.80392 3.93090 3.94457 3.99336 4.08393 4.23197 4.28911 4.34044 4.37529 4.48591 4.51704 4.59154 4.67558 4.75267 4.78633 4.84756 4.90834 4.93458 4.96011 5.00339 5.00682 5.07116 5.12479 5.16754 5.20425 5.30241 5.37020 5.41143 5.47540 5.69275 5.80176 5.89918 6.07552 6.22821 6.56994 7.13053 7.15111 7.27050 7.81011 8.41752 9.23811 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.015129 B = 0.002885 C = 0.002637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1850.361769 B = 9704.091071 C =10614.528104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.161 3.839 3 C -0.101 4.101 4 C -0.128 4.128 5 C 0.517 3.483 6 O -0.591 6.591 7 N -0.611 5.611 8 C 0.116 3.884 9 C -0.115 4.115 10 H 0.124 0.876 11 C 0.197 3.803 12 N -0.625 5.625 13 C -0.242 4.242 14 H 0.076 0.924 15 C -0.061 4.061 16 N -0.944 5.944 17 Si 0.972 3.028 18 H -0.270 1.270 19 H -0.290 1.290 20 H -0.294 1.294 21 C 0.137 3.863 22 C -0.095 4.095 23 H 0.133 0.867 24 C 0.123 3.877 25 C -0.117 4.117 26 C -0.154 4.154 27 C 0.512 3.488 28 O -0.592 6.592 29 N -0.712 5.712 30 H 0.065 0.935 31 H 0.073 0.927 32 H 0.080 0.920 33 H 0.063 0.937 34 H 0.078 0.922 35 H 0.108 0.892 36 H 0.109 0.891 37 H 0.103 0.897 38 H 0.079 0.921 39 H 0.012 0.988 40 H 0.008 0.992 41 H 0.246 0.754 42 H 0.031 0.969 43 H 0.031 0.969 44 H 0.031 0.969 45 H 0.071 0.929 46 H 0.105 0.895 47 H 0.102 0.898 48 H 0.113 0.887 49 H 0.110 0.890 50 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.782 -14.675 0.981 17.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.075 3.925 3 C -0.140 4.140 4 C -0.167 4.167 5 C 0.308 3.692 6 O -0.472 6.472 7 N -0.344 5.344 8 C -0.006 4.006 9 C -0.134 4.134 10 H 0.142 0.858 11 C 0.072 3.928 12 N -0.351 5.351 13 C -0.371 4.371 14 H 0.094 0.906 15 C -0.255 4.255 16 N -0.593 5.593 17 Si 0.801 3.199 18 H -0.195 1.195 19 H -0.216 1.216 20 H -0.221 1.221 21 C 0.011 3.989 22 C -0.114 4.114 23 H 0.151 0.849 24 C 0.000 4.000 25 C -0.154 4.154 26 C -0.194 4.194 27 C 0.300 3.700 28 O -0.473 6.473 29 N -0.365 5.365 30 H 0.084 0.916 31 H 0.092 0.908 32 H 0.099 0.901 33 H 0.082 0.918 34 H 0.097 0.903 35 H 0.126 0.874 36 H 0.127 0.873 37 H 0.121 0.879 38 H 0.097 0.903 39 H 0.031 0.969 40 H 0.026 0.974 41 H 0.056 0.944 42 H 0.049 0.951 43 H 0.049 0.951 44 H 0.049 0.951 45 H 0.089 0.911 46 H 0.124 0.876 47 H 0.121 0.879 48 H 0.131 0.869 49 H 0.128 0.872 50 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges 9.316 -14.878 1.333 17.604 hybrid contribution -1.117 1.140 0.166 1.604 sum 8.199 -13.738 1.499 16.069 Atomic orbital electron populations 1.22172 0.91986 1.03526 1.03903 1.21121 0.95356 0.90344 0.85667 1.21705 1.01186 0.93804 0.97347 1.21715 1.03279 0.89889 1.01866 1.21076 0.79681 0.88653 0.79836 1.90650 1.41249 1.78747 1.36587 1.48369 1.50916 1.12159 1.22923 1.22132 0.94689 0.96817 0.87009 1.23510 0.94889 0.93913 1.01108 0.85783 1.21098 0.92549 0.84416 0.94700 1.44486 1.15152 1.12199 1.63271 1.19414 0.96314 0.95299 1.26062 0.90580 1.25539 0.99291 0.98194 1.02462 1.70153 1.21050 1.16532 1.51586 0.85097 0.78756 0.78298 0.77723 1.19477 1.21645 1.22096 1.21436 0.85537 0.95239 0.96666 1.22858 0.97287 0.94764 0.96495 0.84925 1.21661 0.98639 0.82088 0.97604 1.22759 0.96237 1.00096 0.96343 1.22404 1.00945 1.04945 0.91073 1.21436 0.78677 0.77707 0.92150 1.90723 1.53995 1.43469 1.59119 1.46474 1.35346 1.42735 1.11994 0.91591 0.90768 0.90108 0.91795 0.90347 0.87425 0.87259 0.87874 0.90314 0.96937 0.97399 0.94443 0.95054 0.95127 0.95096 0.91071 0.87640 0.87919 0.86880 0.87215 0.74914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.83 8.46 71.98 0.61 -1.22 16 2 C 0.16 2.11 0.87 4.06 0.00 2.12 16 3 C -0.10 -1.87 3.68 30.59 0.11 -1.76 16 4 C -0.13 -2.64 4.26 29.85 0.13 -2.52 16 5 C 0.52 16.11 7.84 87.66 0.69 16.80 16 6 O -0.59 -22.98 16.29 -3.04 -0.05 -23.03 16 7 N -0.61 -18.81 3.31 -817.19 -2.70 -21.51 16 8 C 0.12 2.90 5.83 86.73 0.51 3.41 16 9 C -0.11 -3.48 4.16 -8.70 -0.04 -3.52 16 10 H 0.12 3.09 8.14 -2.39 -0.02 3.07 16 11 C 0.20 8.96 4.86 87.21 0.42 9.39 16 12 N -0.62 -31.01 3.38 -694.04 -2.34 -33.35 16 13 C -0.24 -13.44 10.25 84.04 0.86 -12.58 16 14 H 0.08 4.12 7.83 -2.91 -0.02 4.10 16 15 C -0.06 -3.45 5.48 84.86 0.47 -2.99 16 16 N -0.94 -54.85 10.25 21.65 0.22 -54.63 16 17 Si 0.97 45.50 29.55 68.60 2.03 47.53 16 18 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 19 H -0.29 -13.41 7.11 99.48 0.71 -12.71 16 20 H -0.29 -13.80 7.11 99.48 0.71 -13.09 16 21 C 0.14 5.28 6.40 86.66 0.55 5.84 16 22 C -0.09 -2.81 4.03 -9.41 -0.04 -2.85 16 23 H 0.13 2.88 8.14 -2.39 -0.02 2.86 16 24 C 0.12 4.08 6.23 86.58 0.54 4.62 16 25 C -0.12 -1.15 6.21 31.66 0.20 -0.95 16 26 C -0.15 -2.01 6.86 30.59 0.21 -1.80 16 27 C 0.51 10.48 8.43 87.90 0.74 11.22 16 28 O -0.59 -17.81 18.03 -3.01 -0.05 -17.86 16 29 N -0.71 -11.02 4.95 -419.98 -2.08 -13.10 16 30 H 0.07 0.81 6.52 -2.39 -0.02 0.79 16 31 H 0.07 0.74 8.14 -2.38 -0.02 0.72 16 32 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 33 H 0.06 1.34 8.10 -2.39 -0.02 1.32 16 34 H 0.08 1.61 8.10 -2.39 -0.02 1.59 16 35 H 0.11 2.08 6.23 -2.38 -0.01 2.07 16 36 H 0.11 1.79 7.47 -2.39 -0.02 1.77 16 37 H 0.10 1.81 8.14 -2.39 -0.02 1.79 16 38 H 0.08 1.96 7.32 -2.39 -0.02 1.95 16 39 H 0.01 0.65 6.80 -2.39 -0.02 0.63 16 40 H 0.01 0.40 7.45 -2.39 -0.02 0.39 16 41 H 0.25 13.91 8.31 -92.71 -0.77 13.14 16 42 H 0.03 1.24 7.79 -2.38 -0.02 1.22 16 43 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 44 H 0.03 1.29 7.48 -2.39 -0.02 1.27 16 45 H 0.07 2.13 8.14 -2.39 -0.02 2.12 16 46 H 0.11 0.87 7.89 -2.39 -0.02 0.85 16 47 H 0.10 0.72 7.91 -2.39 -0.02 0.70 16 48 H 0.11 1.21 8.14 -2.39 -0.02 1.19 16 49 H 0.11 1.35 8.14 -2.39 -0.02 1.33 16 50 H 0.41 5.71 8.68 -92.71 -0.81 4.90 16 Total: -1.00 -79.26 388.10 1.12 -78.15 By element: Atomic # 1 Polarization: 14.46 SS G_CDS: 0.13 Total: 14.60 kcal Atomic # 6 Polarization: 17.25 SS G_CDS: 5.96 Total: 23.21 kcal Atomic # 7 Polarization: -115.69 SS G_CDS: -6.90 Total: -122.59 kcal Atomic # 8 Polarization: -40.79 SS G_CDS: -0.10 Total: -40.89 kcal Atomic # 14 Polarization: 45.50 SS G_CDS: 2.03 Total: 47.53 kcal Total: -79.26 1.12 -78.15 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754848005.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.870 kcal (2) G-P(sol) polarization free energy of solvation -79.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.146 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds