Wall clock time and date at job start Tue Mar 31 2020 19:49:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35915 * 116.99935 * 2 1 4 4 C 1.38853 * 120.40665 * 0.02562 * 3 2 1 5 5 N 1.31886 * 120.99631 * 179.72743 * 4 3 2 6 6 C 1.31675 * 121.94596 * 0.26378 * 5 4 3 7 7 C 1.39530 * 120.69155 * 359.97438 * 6 5 4 8 8 C 1.47853 * 120.53217 * 179.97438 * 7 6 5 9 9 O 1.21551 * 120.00072 * 131.26423 * 8 7 6 10 10 N 1.34777 * 120.00145 * 311.26665 * 8 7 6 11 11 C 1.46504 * 119.99742 * 5.13469 * 10 8 7 12 12 C 1.46500 * 120.00109 * 185.13574 * 10 8 7 13 13 C 1.53002 * 109.46731 * 89.99950 * 12 10 8 14 14 C 1.53001 * 109.47210 * 299.99997 * 13 12 10 15 15 C 1.52993 * 109.47252 * 60.00112 * 13 12 10 16 16 C 1.53003 * 109.46754 * 180.02562 * 13 12 10 17 17 N 1.46507 * 109.46680 * 180.02562 * 16 13 12 18 18 C 1.36939 * 119.99299 * 180.02562 * 17 16 13 19 19 H 1.08001 * 120.00331 * 359.97438 * 18 17 16 20 20 C 1.38816 * 119.99483 * 179.97438 * 18 17 16 21 21 N 1.31620 * 120.00365 * 359.97438 * 20 18 17 22 22 Si 1.86802 * 119.99749 * 179.97438 * 20 18 17 23 23 H 1.48497 * 109.47454 * 0.02562 * 22 20 18 24 24 H 1.48504 * 109.47090 * 120.00070 * 22 20 18 25 25 H 1.48498 * 109.47073 * 239.99613 * 22 20 18 26 26 C 1.38850 * 120.40687 * 180.25491 * 3 2 1 27 27 C 1.50699 * 120.87672 * 359.97438 * 26 3 2 28 28 H 1.08992 * 109.47436 * 59.99387 * 1 2 3 29 29 H 1.09000 * 109.47265 * 180.02562 * 1 2 3 30 30 H 1.09007 * 109.46497 * 299.99829 * 1 2 3 31 31 H 1.07995 * 119.49904 * 359.97438 * 4 3 2 32 32 H 1.07999 * 119.65765 * 180.02562 * 6 5 4 33 33 H 1.09007 * 109.47066 * 84.68881 * 11 10 8 34 34 H 1.08998 * 109.47108 * 204.68535 * 11 10 8 35 35 H 1.08994 * 109.47307 * 324.69115 * 11 10 8 36 36 H 1.08992 * 109.47096 * 209.99581 * 12 10 8 37 37 H 1.08991 * 109.46926 * 330.00354 * 12 10 8 38 38 H 1.08996 * 109.47360 * 60.00055 * 14 13 12 39 39 H 1.09004 * 109.47362 * 180.02562 * 14 13 12 40 40 H 1.08999 * 109.46926 * 300.00156 * 14 13 12 41 41 H 1.09000 * 109.47747 * 59.99828 * 15 13 12 42 42 H 1.09003 * 109.47408 * 179.97438 * 15 13 12 43 43 H 1.09006 * 109.47365 * 299.99959 * 15 13 12 44 44 H 1.09000 * 109.46787 * 299.99280 * 16 13 12 45 45 H 1.08995 * 109.47556 * 60.00283 * 16 13 12 46 46 H 0.96998 * 120.00396 * 359.97438 * 17 16 13 47 47 H 0.96995 * 120.00324 * 179.97438 * 21 20 18 48 48 H 1.09004 * 109.46984 * 274.37443 * 27 26 3 49 49 H 1.08994 * 109.47377 * 34.37311 * 27 26 3 50 50 H 1.09001 * 109.47062 * 154.38134 * 27 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0461 1.2110 0.0000 4 6 1.2981 2.3809 0.0005 5 7 1.8847 3.5621 0.0059 6 6 3.1953 3.6891 0.0059 7 6 4.0200 2.5636 0.0006 8 6 5.4912 2.7104 -0.0001 9 8 6.1655 2.0766 0.7880 10 7 6.0846 3.5469 -0.8744 11 6 5.2680 4.3941 -1.7471 12 6 7.5463 3.6089 -0.9522 13 6 8.0458 2.5912 -1.9797 14 6 7.6169 1.1852 -1.5553 15 6 7.4480 2.9148 -3.3503 16 6 9.5724 2.6555 -2.0605 17 7 10.0507 1.6815 -3.0448 18 6 11.3924 1.5576 -3.2891 19 1 12.0979 2.1781 -2.7565 20 6 11.8457 0.6343 -4.2214 21 7 10.9860 -0.1223 -4.8701 22 14 13.6759 0.4658 -4.5552 23 1 14.4250 1.4229 -3.7020 24 1 14.1104 -0.9196 -4.2432 25 1 13.9473 0.7594 -5.9853 26 6 3.4321 1.2936 -0.0053 27 6 4.2810 0.0484 -0.0106 28 1 -0.3634 0.5139 -0.8898 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3632 0.5139 0.8901 31 1 0.2197 2.3226 0.0005 32 1 3.6367 4.6748 0.0108 33 1 4.9930 5.3051 -1.2153 34 1 5.8380 4.6525 -2.6396 35 1 4.3655 3.8554 -2.0357 36 1 7.8518 4.6104 -1.2546 37 1 7.9721 3.3783 0.0242 38 1 6.5294 1.1391 -1.4973 39 1 7.9732 0.4602 -2.2870 40 1 8.0428 0.9547 -0.5788 41 1 7.7536 3.9164 -3.6528 42 1 7.8043 2.1901 -4.0825 43 1 6.3605 2.8687 -3.2925 44 1 9.8783 3.6571 -2.3628 45 1 9.9980 2.4247 -1.0840 46 1 9.4171 1.1239 -3.5229 47 1 11.3027 -0.7671 -5.5217 48 1 4.4249 -0.2976 1.0130 49 1 3.7826 -0.7287 -0.5900 50 1 5.2496 0.2709 -0.4584 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755281471.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:49:21 Heat of formation + Delta-G solvation = -18.969100 kcal Electronic energy + Delta-G solvation = -30153.349171 eV Core-core repulsion = 26181.905970 eV Total energy + Delta-G solvation = -3971.443201 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.41383 -40.03944 -38.36211 -37.29166 -35.21900 -34.02688 -33.15422 -31.14068 -30.09820 -28.21746 -28.00478 -27.88136 -26.85065 -25.99030 -25.36323 -23.69380 -22.74557 -22.24482 -19.95639 -18.48075 -18.19751 -17.81201 -17.22019 -16.76586 -16.53137 -16.29157 -16.03978 -15.53968 -14.65856 -14.54068 -14.28919 -14.10000 -13.94278 -13.65871 -13.50470 -13.22517 -13.09405 -13.04181 -12.75405 -12.66741 -12.52134 -12.38668 -12.30007 -12.07674 -11.96282 -11.83565 -11.23019 -11.13556 -10.95119 -10.81098 -10.71521 -10.46451 -10.25024 -10.16130 -9.87931 -9.71702 -9.65180 -9.51245 -8.83270 -8.79384 -8.60434 -6.85511 -5.72520 -2.99867 0.42815 0.88738 2.43601 2.74483 2.99593 3.40188 3.45870 3.51664 3.53760 4.00859 4.16061 4.26817 4.43370 4.55854 4.63456 4.69537 4.79160 4.95116 4.96845 5.07622 5.09980 5.16168 5.26439 5.31537 5.41547 5.46742 5.54661 5.58151 5.59781 5.72497 5.84013 5.90168 5.94094 5.96309 6.10252 6.12132 6.23166 6.30414 6.41856 6.51265 6.62200 6.75476 6.76861 6.78303 6.95451 6.98123 7.25420 7.49746 7.74795 8.04696 8.47009 9.58250 10.17381 10.52079 11.50672 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.019733 B = 0.002594 C = 0.002430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1418.601182 B =10790.905796 C =11519.142371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.305 6.305 3 C 0.071 3.929 4 C 0.033 3.967 5 N -0.455 5.455 6 C 0.095 3.905 7 C -0.142 4.142 8 C 0.565 3.435 9 O -0.515 6.515 10 N -0.600 5.600 11 C 0.069 3.931 12 C 0.126 3.874 13 C -0.086 4.086 14 C -0.128 4.128 15 C -0.136 4.136 16 C 0.166 3.834 17 N -0.728 5.728 18 C -0.234 4.234 19 H 0.070 0.930 20 C -0.016 4.016 21 N -0.934 5.934 22 Si 0.906 3.094 23 H -0.281 1.281 24 H -0.292 1.292 25 H -0.293 1.293 26 C -0.020 4.020 27 C -0.116 4.116 28 H 0.058 0.942 29 H 0.105 0.895 30 H 0.058 0.942 31 H 0.161 0.839 32 H 0.165 0.835 33 H 0.058 0.942 34 H 0.084 0.916 35 H 0.068 0.932 36 H 0.079 0.921 37 H 0.088 0.912 38 H 0.038 0.962 39 H 0.062 0.938 40 H 0.057 0.943 41 H 0.049 0.951 42 H 0.067 0.933 43 H 0.044 0.956 44 H 0.018 0.982 45 H 0.020 0.980 46 H 0.385 0.615 47 H 0.254 0.746 48 H 0.084 0.916 49 H 0.075 0.925 50 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.132 6.945 9.374 26.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.217 6.217 3 C 0.023 3.977 4 C -0.124 4.124 5 N -0.165 5.165 6 C -0.064 4.064 7 C -0.147 4.147 8 C 0.351 3.649 9 O -0.391 6.391 10 N -0.333 5.333 11 C -0.074 4.074 12 C 0.004 3.996 13 C -0.087 4.087 14 C -0.185 4.185 15 C -0.194 4.194 16 C 0.037 3.963 17 N -0.373 5.373 18 C -0.366 4.366 19 H 0.088 0.912 20 C -0.211 4.211 21 N -0.583 5.583 22 Si 0.737 3.263 23 H -0.206 1.206 24 H -0.220 1.220 25 H -0.220 1.220 26 C -0.029 4.029 27 C -0.172 4.172 28 H 0.077 0.923 29 H 0.123 0.877 30 H 0.076 0.924 31 H 0.178 0.822 32 H 0.182 0.818 33 H 0.077 0.923 34 H 0.103 0.897 35 H 0.087 0.913 36 H 0.098 0.902 37 H 0.106 0.894 38 H 0.057 0.943 39 H 0.081 0.919 40 H 0.076 0.924 41 H 0.069 0.931 42 H 0.086 0.914 43 H 0.063 0.937 44 H 0.036 0.964 45 H 0.038 0.962 46 H 0.220 0.780 47 H 0.063 0.937 48 H 0.102 0.898 49 H 0.094 0.906 50 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -24.025 7.170 9.807 26.922 hybrid contribution 0.927 -0.861 -0.522 1.369 sum -23.098 6.309 9.285 25.681 Atomic orbital electron populations 1.23157 0.77879 1.04601 1.01552 1.86118 1.21597 1.25486 1.88453 1.19736 0.92232 0.86103 0.99631 1.23029 1.00641 0.87087 1.01665 1.67539 1.11786 1.25953 1.11177 1.22949 0.88502 0.98239 0.96725 1.20779 0.95137 0.93840 1.04975 1.17891 0.86281 0.79656 0.81028 1.90831 1.64662 1.45104 1.38488 1.47667 1.07469 1.40542 1.37601 1.22126 0.96133 0.94147 0.95038 1.21637 0.77515 0.99535 1.00910 1.21109 0.97055 0.95671 0.94885 1.21801 0.99030 0.95822 1.01839 1.21884 0.98982 1.01756 0.96747 1.20581 0.89207 0.93247 0.93239 1.42395 1.05081 1.43587 1.46231 1.19284 0.83833 1.16051 1.17419 0.91215 1.24719 0.97530 0.99210 0.99690 1.69665 1.32425 1.26507 1.29749 0.86129 0.85268 0.77344 0.77539 1.20610 1.21956 1.21981 1.19744 0.90900 0.95636 0.96645 1.20840 0.99276 0.93321 1.03732 0.92302 0.87694 0.92359 0.82178 0.81815 0.92334 0.89696 0.91313 0.90233 0.89408 0.94325 0.91897 0.92434 0.93147 0.91421 0.93657 0.96421 0.96212 0.78015 0.93659 0.89788 0.90614 0.89879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.11 9.82 101.05 0.99 1.10 16 2 O -0.30 -2.82 9.75 -19.47 -0.19 -3.01 16 3 C 0.07 0.74 6.68 -39.13 -0.26 0.47 16 4 C 0.03 0.31 10.21 -17.30 -0.18 0.13 16 5 N -0.46 -4.80 10.34 -12.80 -0.13 -4.93 16 6 C 0.09 0.97 8.94 -17.14 -0.15 0.82 16 7 C -0.14 -1.70 4.92 -104.84 -0.52 -2.22 16 8 C 0.57 7.64 4.78 -12.33 -0.06 7.58 16 9 O -0.52 -8.58 13.87 5.32 0.07 -8.50 16 10 N -0.60 -7.10 2.40 -182.70 -0.44 -7.54 16 11 C 0.07 0.59 7.80 59.85 0.47 1.06 16 12 C 0.13 1.68 4.59 -4.04 -0.02 1.67 16 13 C -0.09 -1.39 0.60 -154.51 -0.09 -1.49 16 14 C -0.13 -2.25 7.05 37.16 0.26 -1.99 16 15 C -0.14 -2.11 7.07 37.15 0.26 -1.84 16 16 C 0.17 3.34 5.15 -4.04 -0.02 3.32 16 17 N -0.73 -18.39 5.00 -59.90 -0.30 -18.69 16 18 C -0.23 -6.61 9.99 -15.06 -0.15 -6.76 16 19 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 20 C -0.02 -0.46 5.50 -17.43 -0.10 -0.56 16 21 N -0.93 -28.43 13.06 55.49 0.72 -27.71 16 22 Si 0.91 22.68 29.55 -169.99 -5.02 17.66 16 23 H -0.28 -6.82 7.11 56.52 0.40 -6.41 16 24 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 25 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 26 C -0.02 -0.25 5.96 -103.76 -0.62 -0.86 16 27 C -0.12 -1.42 9.00 36.01 0.32 -1.10 16 28 H 0.06 0.22 7.67 -51.93 -0.40 -0.18 16 29 H 0.10 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.06 0.22 7.67 -51.93 -0.40 -0.18 16 31 H 0.16 1.00 6.30 -52.49 -0.33 0.67 16 32 H 0.16 1.33 6.27 -52.49 -0.33 1.00 16 33 H 0.06 0.38 7.08 -51.93 -0.37 0.01 16 34 H 0.08 0.71 6.29 -51.93 -0.33 0.38 16 35 H 0.07 0.59 6.24 -51.93 -0.32 0.27 16 36 H 0.08 0.90 8.07 -51.93 -0.42 0.48 16 37 H 0.09 1.28 7.36 -51.93 -0.38 0.90 16 38 H 0.04 0.63 4.32 -51.93 -0.22 0.40 16 39 H 0.06 1.26 6.86 -51.93 -0.36 0.91 16 40 H 0.06 1.08 7.85 -51.93 -0.41 0.67 16 41 H 0.05 0.72 8.07 -51.93 -0.42 0.30 16 42 H 0.07 1.26 6.86 -51.93 -0.36 0.90 16 43 H 0.04 0.61 6.07 -51.93 -0.32 0.29 16 44 H 0.02 0.36 8.14 -51.93 -0.42 -0.07 16 45 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 46 H 0.38 10.19 5.36 -40.82 -0.22 9.97 16 47 H 0.25 7.46 8.31 -40.82 -0.34 7.12 16 48 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 49 H 0.08 0.85 7.75 -51.93 -0.40 0.45 16 50 H 0.08 1.16 4.72 -51.93 -0.25 0.92 16 LS Contribution 382.88 15.07 5.77 5.77 Total: -1.00 -33.90 382.88 -6.83 -40.73 By element: Atomic # 1 Polarization: 14.35 SS G_CDS: -7.46 Total: 6.89 kcal Atomic # 6 Polarization: -0.81 SS G_CDS: 0.14 Total: -0.67 kcal Atomic # 7 Polarization: -58.72 SS G_CDS: -0.15 Total: -58.86 kcal Atomic # 8 Polarization: -11.40 SS G_CDS: -0.12 Total: -11.51 kcal Atomic # 14 Polarization: 22.68 SS G_CDS: -5.02 Total: 17.66 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -33.90 -6.83 -40.73 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755281471.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.758 kcal (2) G-P(sol) polarization free energy of solvation -33.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.727 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds