Wall clock time and date at job start Tue Mar 31 2020 19:49:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35915 * 116.99935 * 2 1 4 4 C 1.38853 * 120.40665 * 0.02562 * 3 2 1 5 5 N 1.31886 * 120.99631 * 179.72743 * 4 3 2 6 6 C 1.31675 * 121.94596 * 0.26378 * 5 4 3 7 7 C 1.39530 * 120.69155 * 359.97438 * 6 5 4 8 8 C 1.47853 * 120.53217 * 179.97438 * 7 6 5 9 9 O 1.21551 * 120.00072 * 131.26423 * 8 7 6 10 10 N 1.34777 * 120.00145 * 311.26665 * 8 7 6 11 11 C 1.46504 * 119.99742 * 5.13469 * 10 8 7 12 12 C 1.46500 * 120.00109 * 185.13574 * 10 8 7 13 13 C 1.53002 * 109.46731 * 89.99950 * 12 10 8 14 14 C 1.53001 * 109.47210 * 299.99997 * 13 12 10 15 15 C 1.52993 * 109.47252 * 60.00112 * 13 12 10 16 16 C 1.53003 * 109.46754 * 180.02562 * 13 12 10 17 17 N 1.46507 * 109.46680 * 180.02562 * 16 13 12 18 18 C 1.36939 * 119.99299 * 180.02562 * 17 16 13 19 19 H 1.08001 * 120.00331 * 359.97438 * 18 17 16 20 20 C 1.38816 * 119.99483 * 179.97438 * 18 17 16 21 21 N 1.31620 * 120.00365 * 359.97438 * 20 18 17 22 22 Si 1.86802 * 119.99749 * 179.97438 * 20 18 17 23 23 H 1.48497 * 109.47454 * 0.02562 * 22 20 18 24 24 H 1.48504 * 109.47090 * 120.00070 * 22 20 18 25 25 H 1.48498 * 109.47073 * 239.99613 * 22 20 18 26 26 C 1.38850 * 120.40687 * 180.25491 * 3 2 1 27 27 C 1.50699 * 120.87672 * 359.97438 * 26 3 2 28 28 H 1.08992 * 109.47436 * 59.99387 * 1 2 3 29 29 H 1.09000 * 109.47265 * 180.02562 * 1 2 3 30 30 H 1.09007 * 109.46497 * 299.99829 * 1 2 3 31 31 H 1.07995 * 119.49904 * 359.97438 * 4 3 2 32 32 H 1.07999 * 119.65765 * 180.02562 * 6 5 4 33 33 H 1.09007 * 109.47066 * 84.68881 * 11 10 8 34 34 H 1.08998 * 109.47108 * 204.68535 * 11 10 8 35 35 H 1.08994 * 109.47307 * 324.69115 * 11 10 8 36 36 H 1.08992 * 109.47096 * 209.99581 * 12 10 8 37 37 H 1.08991 * 109.46926 * 330.00354 * 12 10 8 38 38 H 1.08996 * 109.47360 * 60.00055 * 14 13 12 39 39 H 1.09004 * 109.47362 * 180.02562 * 14 13 12 40 40 H 1.08999 * 109.46926 * 300.00156 * 14 13 12 41 41 H 1.09000 * 109.47747 * 59.99828 * 15 13 12 42 42 H 1.09003 * 109.47408 * 179.97438 * 15 13 12 43 43 H 1.09006 * 109.47365 * 299.99959 * 15 13 12 44 44 H 1.09000 * 109.46787 * 299.99280 * 16 13 12 45 45 H 1.08995 * 109.47556 * 60.00283 * 16 13 12 46 46 H 0.96998 * 120.00396 * 359.97438 * 17 16 13 47 47 H 0.96995 * 120.00324 * 179.97438 * 21 20 18 48 48 H 1.09004 * 109.46984 * 274.37443 * 27 26 3 49 49 H 1.08994 * 109.47377 * 34.37311 * 27 26 3 50 50 H 1.09001 * 109.47062 * 154.38134 * 27 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0461 1.2110 0.0000 4 6 1.2981 2.3809 0.0005 5 7 1.8847 3.5621 0.0059 6 6 3.1953 3.6891 0.0059 7 6 4.0200 2.5636 0.0006 8 6 5.4912 2.7104 -0.0001 9 8 6.1655 2.0766 0.7880 10 7 6.0846 3.5469 -0.8744 11 6 5.2680 4.3941 -1.7471 12 6 7.5463 3.6089 -0.9522 13 6 8.0458 2.5912 -1.9797 14 6 7.6169 1.1852 -1.5553 15 6 7.4480 2.9148 -3.3503 16 6 9.5724 2.6555 -2.0605 17 7 10.0507 1.6815 -3.0448 18 6 11.3924 1.5576 -3.2891 19 1 12.0979 2.1781 -2.7565 20 6 11.8457 0.6343 -4.2214 21 7 10.9860 -0.1223 -4.8701 22 14 13.6759 0.4658 -4.5552 23 1 14.4250 1.4229 -3.7020 24 1 14.1104 -0.9196 -4.2432 25 1 13.9473 0.7594 -5.9853 26 6 3.4321 1.2936 -0.0053 27 6 4.2810 0.0484 -0.0106 28 1 -0.3634 0.5139 -0.8898 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3632 0.5139 0.8901 31 1 0.2197 2.3226 0.0005 32 1 3.6367 4.6748 0.0108 33 1 4.9930 5.3051 -1.2153 34 1 5.8380 4.6525 -2.6396 35 1 4.3655 3.8554 -2.0357 36 1 7.8518 4.6104 -1.2546 37 1 7.9721 3.3783 0.0242 38 1 6.5294 1.1391 -1.4973 39 1 7.9732 0.4602 -2.2870 40 1 8.0428 0.9547 -0.5788 41 1 7.7536 3.9164 -3.6528 42 1 7.8043 2.1901 -4.0825 43 1 6.3605 2.8687 -3.2925 44 1 9.8783 3.6571 -2.3628 45 1 9.9980 2.4247 -1.0840 46 1 9.4171 1.1239 -3.5229 47 1 11.3027 -0.7671 -5.5217 48 1 4.4249 -0.2976 1.0130 49 1 3.7826 -0.7287 -0.5900 50 1 5.2496 0.2709 -0.4584 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755281471.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:49:20 Heat of formation + Delta-G solvation = -41.609570 kcal Electronic energy + Delta-G solvation = -30154.330936 eV Core-core repulsion = 26181.905970 eV Total energy + Delta-G solvation = -3972.424966 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -42.25126 -40.98026 -39.17470 -38.55376 -36.51453 -34.95864 -34.85467 -32.42961 -31.62097 -29.10815 -28.84043 -28.55132 -28.16737 -27.31339 -26.85679 -24.90324 -23.98080 -23.35365 -20.93039 -19.90345 -19.17012 -18.99429 -18.59888 -17.56095 -17.40044 -17.14817 -16.90002 -16.63411 -16.50943 -15.64771 -15.42778 -15.30767 -15.07457 -14.80468 -14.68722 -14.40650 -14.23112 -14.07017 -13.90528 -13.87202 -13.76905 -13.52458 -13.13745 -13.04882 -12.90342 -12.84340 -12.75399 -12.51622 -12.43280 -12.36278 -12.23902 -12.05039 -11.68321 -11.64128 -11.52721 -11.24911 -10.93512 -10.59288 -10.42487 -9.62908 -9.51057 -8.95626 -7.93478 -5.20895 -0.38430 0.09077 1.46629 1.47844 1.50006 1.57885 1.90038 2.26380 2.57258 2.60130 3.27267 3.39991 3.40873 3.49270 3.60585 3.82903 3.86780 3.94878 3.99992 4.15303 4.25785 4.31994 4.36105 4.40345 4.41309 4.47855 4.53888 4.58937 4.63625 4.65660 4.77291 4.79450 4.82340 4.90172 4.91613 4.93290 5.00597 5.08451 5.15119 5.17497 5.19831 5.32532 5.46098 5.50427 5.51862 5.55052 6.14945 6.29156 6.29950 6.73191 7.04953 7.35711 8.13214 8.36575 9.30516 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.019733 B = 0.002594 C = 0.002430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1418.601182 B =10790.905796 C =11519.142371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.012 3.988 2 O -0.322 6.322 3 C 0.071 3.929 4 C 0.041 3.959 5 N -0.463 5.463 6 C 0.100 3.900 7 C -0.153 4.153 8 C 0.563 3.437 9 O -0.557 6.557 10 N -0.596 5.596 11 C 0.061 3.939 12 C 0.135 3.865 13 C -0.077 4.077 14 C -0.114 4.114 15 C -0.127 4.127 16 C 0.163 3.837 17 N -0.739 5.739 18 C -0.240 4.240 19 H 0.075 0.925 20 C -0.078 4.078 21 N -0.970 5.970 22 Si 0.972 3.028 23 H -0.266 1.266 24 H -0.296 1.296 25 H -0.292 1.292 26 C -0.045 4.045 27 C -0.108 4.108 28 H 0.073 0.927 29 H 0.120 0.880 30 H 0.072 0.928 31 H 0.193 0.807 32 H 0.187 0.813 33 H 0.089 0.911 34 H 0.093 0.907 35 H 0.071 0.929 36 H 0.111 0.889 37 H 0.073 0.927 38 H 0.050 0.950 39 H 0.030 0.970 40 H 0.038 0.962 41 H 0.067 0.933 42 H 0.030 0.970 43 H 0.067 0.933 44 H 0.032 0.968 45 H 0.011 0.989 46 H 0.375 0.625 47 H 0.250 0.750 48 H 0.077 0.923 49 H 0.081 0.919 50 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.008 9.216 9.529 29.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 O -0.235 6.235 3 C 0.023 3.977 4 C -0.116 4.116 5 N -0.172 5.172 6 C -0.058 4.058 7 C -0.159 4.159 8 C 0.351 3.649 9 O -0.435 6.435 10 N -0.327 5.327 11 C -0.081 4.081 12 C 0.012 3.988 13 C -0.078 4.078 14 C -0.171 4.171 15 C -0.184 4.184 16 C 0.036 3.964 17 N -0.383 5.383 18 C -0.372 4.372 19 H 0.093 0.907 20 C -0.270 4.270 21 N -0.622 5.622 22 Si 0.802 3.198 23 H -0.191 1.191 24 H -0.224 1.224 25 H -0.219 1.219 26 C -0.053 4.053 27 C -0.165 4.165 28 H 0.092 0.908 29 H 0.139 0.861 30 H 0.091 0.909 31 H 0.210 0.790 32 H 0.204 0.796 33 H 0.107 0.893 34 H 0.111 0.889 35 H 0.090 0.910 36 H 0.129 0.871 37 H 0.091 0.909 38 H 0.069 0.931 39 H 0.049 0.951 40 H 0.057 0.943 41 H 0.086 0.914 42 H 0.050 0.950 43 H 0.086 0.914 44 H 0.049 0.951 45 H 0.029 0.971 46 H 0.209 0.791 47 H 0.059 0.941 48 H 0.095 0.905 49 H 0.099 0.901 50 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -25.923 9.495 9.971 29.353 hybrid contribution 1.376 -1.587 -0.515 2.162 sum -24.548 7.908 9.456 27.469 Atomic orbital electron populations 1.23504 0.75538 1.06246 1.02936 1.86107 1.24040 1.25109 1.88215 1.19752 0.91663 0.87053 0.99237 1.23522 1.02038 0.86238 0.99813 1.67641 1.11732 1.26396 1.11469 1.23223 0.88347 0.98487 0.95728 1.20680 0.94186 0.94503 1.06489 1.18203 0.86963 0.79131 0.80648 1.90810 1.65690 1.46744 1.40294 1.47700 1.06990 1.40456 1.37532 1.22398 0.95809 0.94683 0.95180 1.21455 0.78594 0.99799 0.98993 1.21013 0.94548 0.95645 0.96629 1.21643 0.99573 0.96275 0.99622 1.21793 1.00239 1.01518 0.94854 1.20738 0.91882 0.92395 0.91373 1.42591 1.04192 1.44457 1.47034 1.19685 0.85254 1.15480 1.16742 0.90715 1.25542 1.01820 0.99471 1.00151 1.69826 1.34293 1.27415 1.30631 0.85079 0.80329 0.77098 0.77304 1.19053 1.22365 1.21926 1.19836 0.91982 0.95386 0.98140 1.20698 0.98387 0.94203 1.03172 0.90847 0.86132 0.90909 0.79016 0.79629 0.89284 0.88853 0.91031 0.87137 0.90893 0.93073 0.95116 0.94279 0.91354 0.95050 0.91376 0.95052 0.97091 0.79105 0.94132 0.90476 0.90055 0.92144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.08 9.82 113.37 1.11 1.20 16 2 O -0.32 -5.52 9.75 -92.60 -0.90 -6.42 16 3 C 0.07 1.38 6.68 22.56 0.15 1.53 16 4 C 0.04 0.65 10.21 84.83 0.87 1.52 16 5 N -0.46 -8.45 10.34 -194.39 -2.01 -10.46 16 6 C 0.10 1.82 8.94 85.03 0.76 2.58 16 7 C -0.15 -3.53 4.92 -20.01 -0.10 -3.62 16 8 C 0.56 15.01 4.78 86.79 0.41 15.42 16 9 O -0.56 -19.11 13.87 -3.88 -0.05 -19.17 16 10 N -0.60 -13.09 2.40 -850.20 -2.04 -15.13 16 11 C 0.06 0.85 7.80 127.77 1.00 1.85 16 12 C 0.13 3.40 4.59 86.38 0.40 3.80 16 13 C -0.08 -2.49 0.60 -52.18 -0.03 -2.53 16 14 C -0.11 -4.22 7.05 71.98 0.51 -3.71 16 15 C -0.13 -3.81 7.07 71.98 0.51 -3.30 16 16 C 0.16 6.61 5.15 86.38 0.44 7.05 16 17 N -0.74 -38.24 5.00 -343.43 -1.72 -39.96 16 18 C -0.24 -13.65 9.99 84.03 0.84 -12.81 16 19 H 0.07 4.09 7.83 -2.91 -0.02 4.07 16 20 C -0.08 -4.57 5.50 84.86 0.47 -4.10 16 21 N -0.97 -60.59 13.06 21.65 0.28 -60.30 16 22 Si 0.97 47.14 29.55 68.60 2.03 49.17 16 23 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 24 H -0.30 -14.44 7.11 99.48 0.71 -13.73 16 25 H -0.29 -14.04 7.11 99.48 0.71 -13.33 16 26 C -0.04 -1.07 5.96 -19.30 -0.12 -1.18 16 27 C -0.11 -2.80 9.00 71.24 0.64 -2.16 16 28 H 0.07 0.32 7.67 -2.39 -0.02 0.30 16 29 H 0.12 0.47 8.14 -2.39 -0.02 0.45 16 30 H 0.07 0.32 7.67 -2.38 -0.02 0.30 16 31 H 0.19 1.66 6.30 -2.91 -0.02 1.64 16 32 H 0.19 2.37 6.27 -2.91 -0.02 2.36 16 33 H 0.09 0.76 7.08 -2.38 -0.02 0.74 16 34 H 0.09 1.19 6.29 -2.39 -0.02 1.17 16 35 H 0.07 1.01 6.24 -2.39 -0.01 0.99 16 36 H 0.11 2.15 8.07 -2.39 -0.02 2.13 16 37 H 0.07 2.11 7.36 -2.39 -0.02 2.09 16 38 H 0.05 1.74 4.32 -2.39 -0.01 1.73 16 39 H 0.03 1.30 6.86 -2.39 -0.02 1.29 16 40 H 0.04 1.55 7.85 -2.39 -0.02 1.54 16 41 H 0.07 1.80 8.07 -2.39 -0.02 1.78 16 42 H 0.03 1.17 6.86 -2.39 -0.02 1.15 16 43 H 0.07 1.71 6.07 -2.38 -0.01 1.70 16 44 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 45 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 46 H 0.38 20.72 5.36 -92.71 -0.50 20.22 16 47 H 0.25 15.09 8.31 -92.71 -0.77 14.32 16 48 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 49 H 0.08 1.91 7.75 -2.39 -0.02 1.89 16 50 H 0.06 1.81 4.72 -2.39 -0.01 1.80 16 Total: -1.00 -75.79 382.88 3.92 -71.87 By element: Atomic # 1 Polarization: 28.39 SS G_CDS: 0.47 Total: 28.86 kcal Atomic # 6 Polarization: -6.33 SS G_CDS: 7.86 Total: 1.53 kcal Atomic # 7 Polarization: -120.36 SS G_CDS: -5.48 Total: -125.84 kcal Atomic # 8 Polarization: -24.63 SS G_CDS: -0.96 Total: -25.58 kcal Atomic # 14 Polarization: 47.14 SS G_CDS: 2.03 Total: 49.17 kcal Total: -75.79 3.92 -71.87 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755281471.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.264 kcal (2) G-P(sol) polarization free energy of solvation -75.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.874 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds