Wall clock time and date at job start Tue Mar 31 2020 19:51:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.40190 * 120.36638 * 2 1 4 4 C 1.35359 * 119.94505 * 179.76661 * 3 2 1 5 5 N 1.35759 * 120.69756 * 0.51552 * 4 3 2 6 6 C 1.46509 * 119.61981 * 179.75782 * 5 4 3 7 7 C 1.50698 * 109.47002 * 269.72353 * 6 5 4 8 8 O 1.21283 * 120.00472 * 0.02562 * 7 6 5 9 9 N 1.34777 * 119.99538 * 179.97438 * 7 6 5 10 10 C 1.46499 * 119.99665 * 179.72653 * 9 7 6 11 11 H 1.08999 * 109.47228 * 325.27715 * 10 9 7 12 12 C 1.53001 * 109.47193 * 205.27836 * 10 9 7 13 13 N 1.46508 * 109.47024 * 55.00011 * 12 10 9 14 14 C 1.36933 * 119.99920 * 179.97438 * 13 12 10 15 15 H 1.08010 * 119.99913 * 0.02562 * 14 13 12 16 16 C 1.38810 * 120.00299 * 179.97438 * 14 13 12 17 17 N 1.31621 * 119.99433 * 0.02562 * 16 14 13 18 18 Si 1.86795 * 120.00477 * 180.02562 * 16 14 13 19 19 H 1.48507 * 109.47161 * 0.02562 * 18 16 14 20 20 H 1.48497 * 109.47356 * 120.00133 * 18 16 14 21 21 H 1.48496 * 109.47569 * 240.00529 * 18 16 14 22 22 C 1.52999 * 109.47341 * 85.27876 * 10 9 7 23 23 C 1.53001 * 109.46992 * 59.99623 * 22 10 9 24 24 C 1.52997 * 109.47188 * 180.02562 * 22 10 9 25 25 C 1.53001 * 109.46944 * 300.00113 * 22 10 9 26 26 C 1.34659 * 120.75376 * 359.48183 * 5 4 3 27 27 O 1.22065 * 119.98471 * 180.27494 * 26 5 4 28 28 C 1.36400 * 120.36429 * 180.02562 * 2 1 3 29 29 H 1.08996 * 109.47043 * 269.97773 * 1 2 3 30 30 H 1.09003 * 109.46657 * 29.97753 * 1 2 3 31 31 H 1.08995 * 109.47509 * 149.97325 * 1 2 3 32 32 H 1.07999 * 120.03436 * 0.04589 * 3 2 1 33 33 H 1.07998 * 119.64955 * 180.27407 * 4 3 2 34 34 H 1.09003 * 109.46564 * 149.72781 * 6 5 4 35 35 H 1.08993 * 109.46901 * 29.73116 * 6 5 4 36 36 H 0.97001 * 120.00485 * 0.02562 * 9 7 6 37 37 H 1.09000 * 109.46944 * 174.99908 * 12 10 9 38 38 H 1.08997 * 109.47436 * 295.00057 * 12 10 9 39 39 H 0.96994 * 120.00145 * 0.02562 * 13 12 10 40 40 H 0.97005 * 119.99444 * 179.97438 * 17 16 14 41 41 H 1.09001 * 109.46951 * 60.00551 * 23 22 10 42 42 H 1.08995 * 109.46927 * 180.02562 * 23 22 10 43 43 H 1.08996 * 109.47314 * 300.00650 * 23 22 10 44 44 H 1.08993 * 109.47585 * 60.00233 * 24 22 10 45 45 H 1.09002 * 109.46693 * 180.02562 * 24 22 10 46 46 H 1.09007 * 109.46742 * 299.99475 * 24 22 10 47 47 H 1.08996 * 109.46985 * 59.99581 * 25 22 10 48 48 H 1.08995 * 109.47084 * 179.97438 * 25 22 10 49 49 H 1.08999 * 109.46935 * 299.99738 * 25 22 10 50 50 H 1.08002 * 120.34987 * 359.97438 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2158 1.2096 0.0000 4 6 3.5693 1.1996 0.0048 5 7 4.2538 0.0272 -0.0009 6 6 5.7188 0.0441 -0.0009 7 6 6.2210 0.0498 -1.4217 8 8 5.4330 0.0412 -2.3436 9 7 7.5460 0.0655 -1.6680 10 6 8.0344 0.0651 -3.0492 11 1 7.3667 -0.5319 -3.6704 12 6 9.4419 -0.5332 -3.0922 13 7 9.4263 -1.8631 -2.4777 14 6 10.5805 -2.5960 -2.4023 15 1 11.5025 -2.1935 -2.7955 16 6 10.5659 -3.8558 -1.8195 17 7 9.4425 -4.3460 -1.3399 18 14 12.1405 -4.8554 -1.7160 19 1 13.2565 -4.0853 -2.3219 20 1 12.4527 -5.1413 -0.2926 21 1 11.9646 -6.1338 -2.4506 22 6 8.0741 1.5007 -3.5766 23 6 9.0113 2.3386 -2.7045 24 6 8.5835 1.5001 -5.0193 25 6 6.6666 2.0990 -3.5335 26 6 3.6016 -1.1509 -0.0009 27 8 4.2312 -2.1967 -0.0010 28 6 2.1966 -1.1769 -0.0005 29 1 -0.3633 -0.0004 1.0276 30 1 -0.3633 0.8902 -0.5135 31 1 -0.3634 -0.8897 -0.5142 32 1 1.6823 2.1486 0.0007 33 1 4.1104 2.1342 0.0092 34 1 6.0922 -0.8418 0.5129 35 1 6.0718 0.9380 0.5130 36 1 8.1764 0.0728 -0.9307 37 1 9.7701 -0.6156 -4.1284 38 1 10.1281 0.1123 -2.5440 39 1 8.5983 -2.2246 -2.1249 40 1 9.4322 -5.2265 -0.9330 41 1 10.0140 1.9124 -2.7352 42 1 9.0392 3.3615 -3.0800 43 1 8.6480 2.3389 -1.6769 44 1 7.9156 0.9034 -5.6403 45 1 8.6122 2.5230 -5.3948 46 1 9.5863 1.0738 -5.0503 47 1 6.3033 2.0993 -2.5059 48 1 6.6949 3.1219 -3.9088 49 1 5.9989 1.5020 -4.1548 50 1 1.6682 -2.1189 -0.0005 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755833683.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:51:16 Heat of formation + Delta-G solvation = -30.262602 kcal Electronic energy + Delta-G solvation = -30280.858753 eV Core-core repulsion = 26308.925828 eV Total energy + Delta-G solvation = -3971.932924 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.46979 -39.89601 -37.47758 -36.95647 -35.20473 -34.43459 -33.27817 -31.14905 -30.50103 -29.46942 -27.93331 -27.25162 -27.17884 -26.11984 -23.74453 -23.71035 -21.88777 -21.41157 -20.50040 -18.65915 -17.65717 -17.54456 -17.35331 -16.85185 -16.03378 -15.70922 -15.59360 -15.12515 -14.65742 -14.30548 -14.16461 -14.06520 -13.91987 -13.71873 -13.59481 -13.31657 -13.11364 -12.87458 -12.72269 -12.43006 -12.21591 -12.17634 -11.91451 -11.83470 -11.77773 -11.70362 -11.42405 -11.23058 -11.09463 -10.82078 -10.73944 -10.56802 -10.22927 -10.13667 -9.93230 -9.84274 -9.72834 -9.45771 -8.88524 -8.64026 -7.95056 -6.92901 -5.74095 -3.05232 0.79720 1.89159 2.48842 2.77859 3.38919 3.43964 3.48896 3.51931 3.77155 4.38762 4.52624 4.57362 4.64766 4.83044 4.89743 4.91462 5.02474 5.07111 5.13472 5.13863 5.32952 5.37354 5.44799 5.53874 5.56228 5.64380 5.67073 5.75289 5.84613 5.87944 5.89950 5.97654 6.02408 6.05699 6.08285 6.13194 6.26189 6.30237 6.42605 6.42977 6.46980 6.48516 6.59162 6.71038 6.92660 7.08882 7.70119 7.75156 8.15438 8.41866 8.43439 9.54104 10.10241 10.45028 11.47478 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.010773 B = 0.003578 C = 0.002825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2598.500628 B = 7823.669574 C = 9907.867286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.010 3.990 3 C -0.235 4.235 4 C 0.147 3.853 5 N -0.479 5.479 6 C 0.067 3.933 7 C 0.504 3.496 8 O -0.530 6.530 9 N -0.702 5.702 10 C 0.151 3.849 11 H 0.086 0.914 12 C 0.142 3.858 13 N -0.732 5.732 14 C -0.245 4.245 15 H 0.070 0.930 16 C -0.011 4.011 17 N -0.926 5.926 18 Si 0.906 3.094 19 H -0.281 1.281 20 H -0.292 1.292 21 H -0.292 1.292 22 C -0.076 4.076 23 C -0.141 4.141 24 C -0.141 4.141 25 C -0.127 4.127 26 C 0.518 3.482 27 O -0.537 6.537 28 C -0.244 4.244 29 H 0.078 0.922 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.142 0.858 33 H 0.158 0.842 34 H 0.133 0.867 35 H 0.117 0.883 36 H 0.404 0.596 37 H 0.034 0.966 38 H 0.028 0.972 39 H 0.386 0.614 40 H 0.256 0.744 41 H 0.063 0.937 42 H 0.049 0.951 43 H 0.051 0.949 44 H 0.055 0.945 45 H 0.052 0.948 46 H 0.063 0.937 47 H 0.048 0.952 48 H 0.041 0.959 49 H 0.060 0.940 50 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.463 19.178 3.299 23.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.007 3.993 3 C -0.258 4.258 4 C 0.020 3.980 5 N -0.190 5.190 6 C -0.058 4.058 7 C 0.288 3.712 8 O -0.406 6.406 9 N -0.353 5.353 10 C 0.046 3.954 11 H 0.104 0.896 12 C 0.015 3.985 13 N -0.377 5.377 14 C -0.376 4.376 15 H 0.088 0.912 16 C -0.207 4.207 17 N -0.573 5.573 18 Si 0.737 3.263 19 H -0.206 1.206 20 H -0.219 1.219 21 H -0.219 1.219 22 C -0.078 4.078 23 C -0.198 4.198 24 C -0.199 4.199 25 C -0.184 4.184 26 C 0.320 3.680 27 O -0.417 6.417 28 C -0.266 4.266 29 H 0.097 0.903 30 H 0.091 0.909 31 H 0.091 0.909 32 H 0.160 0.840 33 H 0.175 0.825 34 H 0.151 0.849 35 H 0.135 0.865 36 H 0.239 0.761 37 H 0.052 0.948 38 H 0.046 0.954 39 H 0.220 0.780 40 H 0.066 0.934 41 H 0.082 0.918 42 H 0.068 0.932 43 H 0.070 0.930 44 H 0.074 0.926 45 H 0.071 0.929 46 H 0.082 0.918 47 H 0.067 0.933 48 H 0.060 0.940 49 H 0.079 0.921 50 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -13.405 18.401 2.614 22.916 hybrid contribution 0.931 -0.711 0.497 1.272 sum -12.475 17.690 3.111 21.868 Atomic orbital electron populations 1.20902 0.90579 1.03419 1.02857 1.20150 0.96581 0.92703 0.89910 1.20438 0.92332 0.98721 1.14342 1.21831 0.93548 0.89497 0.93139 1.45047 1.07237 1.07167 1.59522 1.21841 0.79545 1.07337 0.97114 1.20428 0.83277 0.76766 0.90717 1.90727 1.55326 1.49181 1.45376 1.45823 1.06121 1.73792 1.09558 1.21291 0.97150 0.94880 0.82104 0.89605 1.21087 0.92011 0.88180 0.97271 1.42383 1.10075 1.14058 1.71157 1.19212 0.88356 0.97379 1.32677 0.91178 1.24774 0.96923 0.97704 1.01342 1.69694 1.24755 1.18279 1.44616 0.86147 0.82673 0.80278 0.77218 1.20608 1.21883 1.21871 1.20895 0.95975 0.95111 0.95776 1.21905 0.99716 0.98929 0.99225 1.21884 1.01671 1.01355 0.94963 1.21858 0.95590 0.99208 1.01762 1.17122 0.89333 0.82613 0.78978 1.91054 1.68913 1.30050 1.51731 1.21934 0.92358 0.99486 1.12839 0.90309 0.90934 0.90910 0.84028 0.82495 0.84927 0.86512 0.76069 0.94791 0.95399 0.77962 0.93445 0.91826 0.93212 0.92971 0.92574 0.92886 0.91836 0.93280 0.93977 0.92062 0.83687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.83 10.03 36.01 0.36 -0.47 16 2 C 0.01 0.10 5.89 -104.55 -0.62 -0.51 16 3 C -0.23 -2.08 9.71 -39.88 -0.39 -2.46 16 4 C 0.15 1.41 10.28 -16.84 -0.17 1.24 16 5 N -0.48 -6.39 2.07 -121.06 -0.25 -6.65 16 6 C 0.07 0.85 5.82 -5.19 -0.03 0.82 16 7 C 0.50 7.90 6.26 -10.99 -0.07 7.83 16 8 O -0.53 -9.92 13.56 5.55 0.08 -9.85 16 9 N -0.70 -10.70 3.64 -53.81 -0.20 -10.89 16 10 C 0.15 2.48 1.69 -67.93 -0.11 2.36 16 11 H 0.09 1.69 7.57 -51.93 -0.39 1.30 16 12 C 0.14 2.72 5.10 -4.04 -0.02 2.70 16 13 N -0.73 -18.23 5.43 -59.90 -0.33 -18.56 16 14 C -0.25 -6.80 9.99 -15.06 -0.15 -6.95 16 15 H 0.07 1.88 7.83 -52.48 -0.41 1.47 16 16 C -0.01 -0.31 5.50 -17.43 -0.10 -0.41 16 17 N -0.93 -28.63 13.06 55.49 0.72 -27.91 16 18 Si 0.91 22.57 29.55 -169.99 -5.02 17.55 16 19 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 20 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 21 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 22 C -0.08 -1.00 0.62 -154.51 -0.10 -1.09 16 23 C -0.14 -1.61 7.97 37.16 0.30 -1.31 16 24 C -0.14 -1.76 8.12 37.16 0.30 -1.46 16 25 C -0.13 -1.66 7.00 37.16 0.26 -1.40 16 26 C 0.52 8.74 7.40 -15.45 -0.11 8.62 16 27 O -0.54 -11.70 16.64 4.86 0.08 -11.62 16 28 C -0.24 -3.33 9.65 -39.38 -0.38 -3.71 16 29 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.07 0.39 8.10 -51.93 -0.42 -0.03 16 31 H 0.07 0.49 8.09 -51.93 -0.42 0.07 16 32 H 0.14 0.82 8.06 -52.49 -0.42 0.39 16 33 H 0.16 0.92 8.03 -52.49 -0.42 0.50 16 34 H 0.13 1.90 7.39 -51.93 -0.38 1.52 16 35 H 0.12 0.88 8.01 -51.93 -0.42 0.47 16 36 H 0.40 5.75 8.60 -40.82 -0.35 5.40 16 37 H 0.03 0.67 6.71 -51.93 -0.35 0.32 16 38 H 0.03 0.51 6.17 -51.93 -0.32 0.19 16 39 H 0.39 10.50 7.33 -40.82 -0.30 10.20 16 40 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 41 H 0.06 0.77 6.32 -51.93 -0.33 0.44 16 42 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 43 H 0.05 0.56 7.60 -51.93 -0.39 0.17 16 44 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 45 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 46 H 0.06 0.81 6.55 -51.92 -0.34 0.47 16 47 H 0.05 0.64 5.79 -51.93 -0.30 0.34 16 48 H 0.04 0.48 8.14 -51.93 -0.42 0.05 16 49 H 0.06 0.93 7.54 -51.93 -0.39 0.54 16 50 H 0.15 1.86 8.06 -52.49 -0.42 1.44 16 LS Contribution 399.08 15.07 6.01 6.01 Total: -1.00 -37.16 399.08 -7.96 -45.13 By element: Atomic # 1 Polarization: 21.02 SS G_CDS: -8.03 Total: 12.98 kcal Atomic # 6 Polarization: 4.83 SS G_CDS: -1.03 Total: 3.80 kcal Atomic # 7 Polarization: -63.96 SS G_CDS: -0.05 Total: -64.01 kcal Atomic # 8 Polarization: -21.62 SS G_CDS: 0.16 Total: -21.47 kcal Atomic # 14 Polarization: 22.57 SS G_CDS: -5.02 Total: 17.55 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -37.16 -7.96 -45.13 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755833683.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.864 kcal (2) G-P(sol) polarization free energy of solvation -37.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.127 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds