Wall clock time and date at job start Tue Mar 31 2020 19:51:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.40190 * 120.36638 * 2 1 4 4 C 1.35359 * 119.94505 * 179.76661 * 3 2 1 5 5 N 1.35759 * 120.69756 * 0.51552 * 4 3 2 6 6 C 1.46509 * 119.61981 * 179.75782 * 5 4 3 7 7 C 1.50698 * 109.47002 * 269.72353 * 6 5 4 8 8 O 1.21283 * 120.00472 * 0.02562 * 7 6 5 9 9 N 1.34777 * 119.99538 * 179.97438 * 7 6 5 10 10 C 1.46499 * 119.99665 * 179.72653 * 9 7 6 11 11 H 1.08999 * 109.47228 * 325.27715 * 10 9 7 12 12 C 1.53001 * 109.47193 * 205.27836 * 10 9 7 13 13 N 1.46508 * 109.47024 * 55.00011 * 12 10 9 14 14 C 1.36933 * 119.99920 * 179.97438 * 13 12 10 15 15 H 1.08010 * 119.99913 * 0.02562 * 14 13 12 16 16 C 1.38810 * 120.00299 * 179.97438 * 14 13 12 17 17 N 1.31621 * 119.99433 * 0.02562 * 16 14 13 18 18 Si 1.86795 * 120.00477 * 180.02562 * 16 14 13 19 19 H 1.48507 * 109.47161 * 0.02562 * 18 16 14 20 20 H 1.48497 * 109.47356 * 120.00133 * 18 16 14 21 21 H 1.48496 * 109.47569 * 240.00529 * 18 16 14 22 22 C 1.52999 * 109.47341 * 85.27876 * 10 9 7 23 23 C 1.53001 * 109.46992 * 59.99623 * 22 10 9 24 24 C 1.52997 * 109.47188 * 180.02562 * 22 10 9 25 25 C 1.53001 * 109.46944 * 300.00113 * 22 10 9 26 26 C 1.34659 * 120.75376 * 359.48183 * 5 4 3 27 27 O 1.22065 * 119.98471 * 180.27494 * 26 5 4 28 28 C 1.36400 * 120.36429 * 180.02562 * 2 1 3 29 29 H 1.08996 * 109.47043 * 269.97773 * 1 2 3 30 30 H 1.09003 * 109.46657 * 29.97753 * 1 2 3 31 31 H 1.08995 * 109.47509 * 149.97325 * 1 2 3 32 32 H 1.07999 * 120.03436 * 0.04589 * 3 2 1 33 33 H 1.07998 * 119.64955 * 180.27407 * 4 3 2 34 34 H 1.09003 * 109.46564 * 149.72781 * 6 5 4 35 35 H 1.08993 * 109.46901 * 29.73116 * 6 5 4 36 36 H 0.97001 * 120.00485 * 0.02562 * 9 7 6 37 37 H 1.09000 * 109.46944 * 174.99908 * 12 10 9 38 38 H 1.08997 * 109.47436 * 295.00057 * 12 10 9 39 39 H 0.96994 * 120.00145 * 0.02562 * 13 12 10 40 40 H 0.97005 * 119.99444 * 179.97438 * 17 16 14 41 41 H 1.09001 * 109.46951 * 60.00551 * 23 22 10 42 42 H 1.08995 * 109.46927 * 180.02562 * 23 22 10 43 43 H 1.08996 * 109.47314 * 300.00650 * 23 22 10 44 44 H 1.08993 * 109.47585 * 60.00233 * 24 22 10 45 45 H 1.09002 * 109.46693 * 180.02562 * 24 22 10 46 46 H 1.09007 * 109.46742 * 299.99475 * 24 22 10 47 47 H 1.08996 * 109.46985 * 59.99581 * 25 22 10 48 48 H 1.08995 * 109.47084 * 179.97438 * 25 22 10 49 49 H 1.08999 * 109.46935 * 299.99738 * 25 22 10 50 50 H 1.08002 * 120.34987 * 359.97438 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2158 1.2096 0.0000 4 6 3.5693 1.1996 0.0048 5 7 4.2538 0.0272 -0.0009 6 6 5.7188 0.0441 -0.0009 7 6 6.2210 0.0498 -1.4217 8 8 5.4330 0.0412 -2.3436 9 7 7.5460 0.0655 -1.6680 10 6 8.0344 0.0651 -3.0492 11 1 7.3667 -0.5319 -3.6704 12 6 9.4419 -0.5332 -3.0922 13 7 9.4263 -1.8631 -2.4777 14 6 10.5805 -2.5960 -2.4023 15 1 11.5025 -2.1935 -2.7955 16 6 10.5659 -3.8558 -1.8195 17 7 9.4425 -4.3460 -1.3399 18 14 12.1405 -4.8554 -1.7160 19 1 13.2565 -4.0853 -2.3219 20 1 12.4527 -5.1413 -0.2926 21 1 11.9646 -6.1338 -2.4506 22 6 8.0741 1.5007 -3.5766 23 6 9.0113 2.3386 -2.7045 24 6 8.5835 1.5001 -5.0193 25 6 6.6666 2.0990 -3.5335 26 6 3.6016 -1.1509 -0.0009 27 8 4.2312 -2.1967 -0.0010 28 6 2.1966 -1.1769 -0.0005 29 1 -0.3633 -0.0004 1.0276 30 1 -0.3633 0.8902 -0.5135 31 1 -0.3634 -0.8897 -0.5142 32 1 1.6823 2.1486 0.0007 33 1 4.1104 2.1342 0.0092 34 1 6.0922 -0.8418 0.5129 35 1 6.0718 0.9380 0.5130 36 1 8.1764 0.0728 -0.9307 37 1 9.7701 -0.6156 -4.1284 38 1 10.1281 0.1123 -2.5440 39 1 8.5983 -2.2246 -2.1249 40 1 9.4322 -5.2265 -0.9330 41 1 10.0140 1.9124 -2.7352 42 1 9.0392 3.3615 -3.0800 43 1 8.6480 2.3389 -1.6769 44 1 7.9156 0.9034 -5.6403 45 1 8.6122 2.5230 -5.3948 46 1 9.5863 1.0738 -5.0503 47 1 6.3033 2.0993 -2.5059 48 1 6.6949 3.1219 -3.9088 49 1 5.9989 1.5020 -4.1548 50 1 1.6682 -2.1189 -0.0005 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755833683.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:51:15 Heat of formation + Delta-G solvation = -56.337443 kcal Electronic energy + Delta-G solvation = -30281.989443 eV Core-core repulsion = 26308.925828 eV Total energy + Delta-G solvation = -3973.063614 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -42.53186 -41.13922 -38.73715 -38.10475 -36.24539 -36.14385 -34.67876 -33.04697 -31.41891 -30.50747 -29.39989 -28.22918 -28.12658 -27.31002 -25.58270 -24.63443 -23.27665 -22.63770 -21.69432 -19.89559 -19.28831 -18.54356 -18.43681 -18.35883 -17.11702 -16.95577 -16.90226 -16.51527 -16.20113 -15.51765 -15.42241 -15.17417 -15.11588 -14.87898 -14.73207 -14.71370 -14.24490 -14.15294 -13.72526 -13.59362 -13.34693 -13.10341 -13.05455 -12.99621 -12.93916 -12.83521 -12.77501 -12.51809 -12.45269 -12.35280 -12.14744 -12.02664 -11.76956 -11.63184 -11.30505 -11.19862 -11.08093 -10.95772 -10.52924 -9.94193 -9.02359 -8.96922 -7.95171 -5.26182 -0.09756 0.94198 1.45147 1.45604 1.46995 1.55695 1.56720 2.23770 2.54079 2.72592 3.38702 3.57502 3.62501 3.71372 3.74521 3.86900 3.89765 4.03213 4.09530 4.18768 4.23900 4.33375 4.35081 4.41788 4.43791 4.64413 4.79899 4.83195 4.84390 4.86116 4.88470 4.90708 4.96425 5.07047 5.09017 5.12018 5.15796 5.25029 5.25409 5.31874 5.43468 5.48834 5.49475 5.56434 5.63057 5.69814 6.08948 6.23768 6.50160 7.01460 7.18969 7.30605 8.05431 8.27691 9.27557 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.010773 B = 0.003578 C = 0.002825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2598.500628 B = 7823.669574 C = 9907.867286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.036 3.964 3 C -0.230 4.230 4 C 0.142 3.858 5 N -0.479 5.479 6 C 0.070 3.930 7 C 0.501 3.499 8 O -0.564 6.564 9 N -0.698 5.698 10 C 0.160 3.840 11 H 0.043 0.957 12 C 0.144 3.856 13 N -0.745 5.745 14 C -0.240 4.240 15 H 0.082 0.918 16 C -0.078 4.078 17 N -0.970 5.970 18 Si 0.974 3.026 19 H -0.260 1.260 20 H -0.293 1.293 21 H -0.300 1.300 22 C -0.069 4.069 23 C -0.136 4.136 24 C -0.141 4.141 25 C -0.118 4.118 26 C 0.496 3.504 27 O -0.617 6.617 28 C -0.296 4.296 29 H 0.099 0.901 30 H 0.098 0.902 31 H 0.069 0.931 32 H 0.188 0.812 33 H 0.206 0.794 34 H 0.108 0.892 35 H 0.178 0.822 36 H 0.411 0.589 37 H 0.034 0.966 38 H 0.051 0.949 39 H 0.370 0.630 40 H 0.248 0.752 41 H 0.057 0.943 42 H 0.072 0.928 43 H 0.060 0.940 44 H 0.041 0.959 45 H 0.078 0.922 46 H 0.058 0.942 47 H 0.049 0.951 48 H 0.066 0.934 49 H 0.031 0.969 50 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.367 23.894 3.692 27.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.032 3.968 3 C -0.252 4.252 4 C 0.016 3.984 5 N -0.188 5.188 6 C -0.055 4.055 7 C 0.287 3.713 8 O -0.443 6.443 9 N -0.348 5.348 10 C 0.055 3.945 11 H 0.062 0.938 12 C 0.018 3.982 13 N -0.388 5.388 14 C -0.372 4.372 15 H 0.100 0.900 16 C -0.270 4.270 17 N -0.621 5.621 18 Si 0.803 3.197 19 H -0.184 1.184 20 H -0.220 1.220 21 H -0.227 1.227 22 C -0.070 4.070 23 C -0.193 4.193 24 C -0.199 4.199 25 C -0.175 4.175 26 C 0.302 3.698 27 O -0.505 6.505 28 C -0.317 4.317 29 H 0.117 0.883 30 H 0.116 0.884 31 H 0.088 0.912 32 H 0.205 0.795 33 H 0.223 0.777 34 H 0.126 0.874 35 H 0.196 0.804 36 H 0.247 0.753 37 H 0.052 0.948 38 H 0.068 0.932 39 H 0.202 0.798 40 H 0.057 0.943 41 H 0.076 0.924 42 H 0.091 0.909 43 H 0.079 0.921 44 H 0.060 0.940 45 H 0.097 0.903 46 H 0.077 0.923 47 H 0.068 0.932 48 H 0.085 0.915 49 H 0.050 0.950 50 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -13.291 23.224 2.992 26.925 hybrid contribution 0.798 -2.001 0.306 2.176 sum -12.492 21.223 3.298 24.846 Atomic orbital electron populations 1.21036 0.87787 1.04557 1.04388 1.20652 0.98586 0.91944 0.85665 1.21069 0.92287 0.99712 1.12100 1.22754 0.94475 0.89500 0.91680 1.45047 1.07608 1.07553 1.58564 1.21960 0.79435 1.09045 0.95072 1.20942 0.82924 0.75737 0.91707 1.90712 1.56082 1.50768 1.46782 1.45763 1.06355 1.73502 1.09221 1.21081 0.94354 0.96636 0.82424 0.93837 1.21256 0.94261 0.85938 0.96786 1.42606 1.08727 1.16029 1.71433 1.19669 0.89405 0.97405 1.30717 0.90004 1.25623 0.99968 0.99259 1.02134 1.69888 1.27215 1.18364 1.46641 0.85062 0.79484 0.78280 0.76841 1.18430 1.22040 1.22744 1.20846 0.97023 0.92741 0.96405 1.21868 0.98508 0.99558 0.99350 1.21898 1.00907 1.02656 0.94415 1.21748 0.94500 0.99887 1.01357 1.17650 0.90497 0.82778 0.78871 1.90989 1.70372 1.32713 1.56378 1.21846 0.91288 1.00936 1.17656 0.88301 0.88351 0.91235 0.79480 0.77713 0.87382 0.80434 0.75332 0.94848 0.93179 0.79804 0.94320 0.92448 0.90937 0.92061 0.94022 0.90328 0.92268 0.93175 0.91476 0.94987 0.84769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.33 10.03 71.24 0.71 -0.61 16 2 C 0.04 0.67 5.89 -19.82 -0.12 0.56 16 3 C -0.23 -3.18 9.71 22.08 0.21 -2.96 16 4 C 0.14 2.27 10.28 83.42 0.86 3.12 16 5 N -0.48 -12.74 2.07 -655.05 -1.36 -14.10 16 6 C 0.07 1.75 5.82 85.63 0.50 2.25 16 7 C 0.50 15.98 6.26 87.66 0.55 16.53 16 8 O -0.56 -21.91 13.56 -3.04 -0.04 -21.95 16 9 N -0.70 -21.41 3.64 -442.54 -1.61 -23.02 16 10 C 0.16 5.36 1.69 44.99 0.08 5.43 16 11 H 0.04 1.83 7.57 -2.39 -0.02 1.81 16 12 C 0.14 5.50 5.10 86.38 0.44 5.94 16 13 N -0.75 -38.04 5.43 -343.43 -1.87 -39.91 16 14 C -0.24 -13.41 9.99 84.03 0.84 -12.57 16 15 H 0.08 4.30 7.83 -2.91 -0.02 4.28 16 16 C -0.08 -4.57 5.50 84.86 0.47 -4.10 16 17 N -0.97 -62.51 13.06 21.65 0.28 -62.22 16 18 Si 0.97 47.18 29.55 68.60 2.03 49.20 16 19 H -0.26 -11.57 7.11 99.48 0.71 -10.87 16 20 H -0.29 -14.15 7.11 99.48 0.71 -13.44 16 21 H -0.30 -14.80 7.11 99.48 0.71 -14.09 16 22 C -0.07 -1.69 0.62 -52.18 -0.03 -1.73 16 23 C -0.14 -2.65 7.97 71.98 0.57 -2.08 16 24 C -0.14 -3.32 8.12 71.98 0.58 -2.73 16 25 C -0.12 -2.85 7.00 71.98 0.50 -2.34 16 26 C 0.50 18.09 7.40 84.82 0.63 18.72 16 27 O -0.62 -30.03 16.64 -5.53 -0.09 -30.12 16 28 C -0.30 -8.63 9.65 22.40 0.22 -8.41 16 29 H 0.10 0.78 8.14 -2.39 -0.02 0.76 16 30 H 0.10 0.63 8.10 -2.39 -0.02 0.61 16 31 H 0.07 0.85 8.09 -2.39 -0.02 0.83 16 32 H 0.19 0.95 8.06 -2.91 -0.02 0.92 16 33 H 0.21 1.23 8.03 -2.91 -0.02 1.20 16 34 H 0.11 3.34 7.39 -2.39 -0.02 3.32 16 35 H 0.18 2.10 8.01 -2.39 -0.02 2.08 16 36 H 0.41 11.54 8.60 -92.71 -0.80 10.74 16 37 H 0.03 1.31 6.71 -2.39 -0.02 1.29 16 38 H 0.05 1.75 6.17 -2.39 -0.01 1.73 16 39 H 0.37 21.14 7.33 -92.71 -0.68 20.46 16 40 H 0.25 15.64 8.31 -92.70 -0.77 14.87 16 41 H 0.06 1.20 6.32 -2.39 -0.02 1.19 16 42 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 43 H 0.06 1.09 7.60 -2.39 -0.02 1.08 16 44 H 0.04 1.08 8.14 -2.39 -0.02 1.06 16 45 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 46 H 0.06 1.43 6.55 -2.38 -0.02 1.42 16 47 H 0.05 1.19 5.79 -2.39 -0.01 1.18 16 48 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 49 H 0.03 0.96 7.54 -2.39 -0.02 0.94 16 50 H 0.13 3.95 8.06 -2.91 -0.02 3.93 16 Total: -1.00 -89.82 399.08 3.83 -85.99 By element: Atomic # 1 Polarization: 41.63 SS G_CDS: -0.52 Total: 41.11 kcal Atomic # 6 Polarization: 8.00 SS G_CDS: 7.01 Total: 15.02 kcal Atomic # 7 Polarization: -134.70 SS G_CDS: -4.55 Total: -139.25 kcal Atomic # 8 Polarization: -51.94 SS G_CDS: -0.13 Total: -52.07 kcal Atomic # 14 Polarization: 47.18 SS G_CDS: 2.03 Total: 49.20 kcal Total: -89.82 3.83 -85.99 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755833683.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.652 kcal (2) G-P(sol) polarization free energy of solvation -89.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.989 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds