Wall clock time and date at job start Tue Mar 31 2020 19:51:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.40196 * 120.37368 * 2 1 4 4 C 1.35350 * 119.94963 * 179.76679 * 3 2 1 5 5 N 1.35764 * 120.70161 * 0.51112 * 4 3 2 6 6 C 1.46499 * 119.62258 * 179.75751 * 5 4 3 7 7 C 1.50692 * 109.47445 * 269.72899 * 6 5 4 8 8 O 1.21285 * 120.00172 * 359.97438 * 7 6 5 9 9 N 1.34777 * 120.00099 * 180.02562 * 7 6 5 10 10 C 1.46504 * 119.99976 * 180.02562 * 9 7 6 11 11 H 1.08991 * 109.47119 * 34.99771 * 10 9 7 12 12 C 1.53000 * 109.47054 * 155.00344 * 10 9 7 13 13 N 1.46499 * 109.46840 * 304.99499 * 12 10 9 14 14 C 1.36936 * 120.00002 * 180.02562 * 13 12 10 15 15 H 1.08004 * 120.00140 * 0.02562 * 14 13 12 16 16 C 1.38811 * 120.00367 * 180.02562 * 14 13 12 17 17 N 1.31619 * 119.99972 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 120.00444 * 180.02562 * 16 14 13 19 19 H 1.48502 * 109.47261 * 59.99582 * 18 16 14 20 20 H 1.48502 * 109.47375 * 179.97438 * 18 16 14 21 21 H 1.48499 * 109.46897 * 300.00142 * 18 16 14 22 22 C 1.53006 * 109.46878 * 274.99815 * 10 9 7 23 23 C 1.53003 * 109.47177 * 300.00264 * 22 10 9 24 24 C 1.53000 * 109.46846 * 60.00402 * 22 10 9 25 25 C 1.52996 * 109.46968 * 180.02562 * 22 10 9 26 26 C 1.34654 * 120.75017 * 359.48916 * 5 4 3 27 27 O 1.22055 * 119.98555 * 180.27968 * 26 5 4 28 28 C 1.36400 * 120.36638 * 180.02562 * 2 1 3 29 29 H 1.08992 * 109.47436 * 269.98263 * 1 2 3 30 30 H 1.09006 * 109.46415 * 29.97824 * 1 2 3 31 31 H 1.08994 * 109.47157 * 149.97620 * 1 2 3 32 32 H 1.08002 * 120.02160 * 0.04506 * 3 2 1 33 33 H 1.08002 * 119.64600 * 180.27096 * 4 3 2 34 34 H 1.08999 * 109.46872 * 149.72619 * 6 5 4 35 35 H 1.09008 * 109.47201 * 29.73342 * 6 5 4 36 36 H 0.96996 * 119.99934 * 0.02562 * 9 7 6 37 37 H 1.09002 * 109.47398 * 64.99825 * 12 10 9 38 38 H 1.09001 * 109.47194 * 185.00006 * 12 10 9 39 39 H 0.97000 * 120.00420 * 0.02562 * 13 12 10 40 40 H 0.96996 * 120.00586 * 180.02562 * 17 16 14 41 41 H 1.09000 * 109.46966 * 60.00097 * 23 22 10 42 42 H 1.08998 * 109.46717 * 180.02562 * 23 22 10 43 43 H 1.09001 * 109.46640 * 300.00001 * 23 22 10 44 44 H 1.09001 * 109.47624 * 59.99715 * 24 22 10 45 45 H 1.09002 * 109.46642 * 179.97438 * 24 22 10 46 46 H 1.09002 * 109.47069 * 299.99434 * 24 22 10 47 47 H 1.09001 * 109.47336 * 59.99701 * 25 22 10 48 48 H 1.08998 * 109.47375 * 180.02562 * 25 22 10 49 49 H 1.09001 * 109.47456 * 299.99957 * 25 22 10 50 50 H 1.08008 * 120.34473 * 0.02562 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2159 1.2095 0.0000 4 6 3.5693 1.1995 0.0048 5 7 4.2539 0.0271 -0.0008 6 6 5.7187 0.0439 -0.0009 7 6 6.2211 0.0496 -1.4216 8 8 5.4330 0.0401 -2.3435 9 7 7.5461 0.0643 -1.6678 10 6 8.0344 0.0705 -3.0491 11 1 7.3555 0.6528 -3.6719 12 6 9.4303 0.6954 -3.0937 13 7 9.3892 2.0263 -2.4828 14 6 10.5291 2.7814 -2.4093 15 1 11.4585 2.3960 -2.8020 16 6 10.4904 4.0422 -1.8299 17 7 9.3578 4.5122 -1.3517 18 14 12.0453 5.0726 -1.7303 19 1 12.5620 5.3228 -3.0998 20 1 11.7392 6.3685 -1.0728 21 1 13.0708 4.3458 -0.9395 22 6 8.1016 -1.3657 -3.5726 23 6 9.0547 -2.1832 -2.6983 24 6 6.7058 -1.9906 -3.5280 25 6 8.6122 -1.3593 -5.0149 26 6 3.6017 -1.1509 -0.0009 27 8 4.2311 -2.1967 -0.0008 28 6 2.1965 -1.1769 -0.0005 29 1 -0.3634 -0.0003 1.0276 30 1 -0.3632 0.8903 -0.5135 31 1 -0.3633 -0.8897 -0.5142 32 1 1.6823 2.1486 0.0007 33 1 4.1105 2.1342 0.0092 34 1 6.0922 -0.8418 0.5130 35 1 6.0719 0.9380 0.5131 36 1 8.1763 0.0708 -0.9306 37 1 10.1286 0.0645 -2.5438 38 1 9.7569 0.7813 -4.1301 39 1 8.5545 2.3726 -2.1303 40 1 9.3306 5.3934 -0.9472 41 1 8.6913 -2.1877 -1.6707 42 1 9.1028 -3.2061 -3.0716 43 1 10.0490 -1.7379 -2.7302 44 1 6.0268 -1.4082 -4.1508 45 1 6.7536 -3.0135 -3.9014 46 1 6.3425 -1.9952 -2.5003 47 1 9.6067 -0.9141 -5.0463 48 1 8.6597 -2.3823 -5.3880 49 1 7.9336 -0.7768 -5.6380 50 1 1.6681 -2.1189 -0.0014 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755833684.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:51:20 Heat of formation + Delta-G solvation = -32.945460 kcal Electronic energy + Delta-G solvation = -30277.785082 eV Core-core repulsion = 26305.735820 eV Total energy + Delta-G solvation = -3972.049262 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.50493 -39.88656 -37.46179 -37.01394 -35.22244 -34.46921 -33.29193 -31.19989 -30.50861 -29.49482 -27.93817 -27.20280 -27.09723 -26.10903 -23.76882 -23.73639 -21.92224 -21.43006 -20.50304 -18.62266 -17.70878 -17.54605 -17.36692 -16.90769 -16.06037 -15.70490 -15.58049 -15.16637 -14.68309 -14.30930 -14.19091 -14.06419 -13.90621 -13.71262 -13.53295 -13.34449 -13.15416 -12.87574 -12.73487 -12.44961 -12.22296 -12.16007 -11.87962 -11.77632 -11.77268 -11.69335 -11.33837 -11.22059 -11.08820 -10.84268 -10.75389 -10.48162 -10.28566 -10.15272 -9.97481 -9.92870 -9.79700 -9.46444 -8.94811 -8.63527 -7.98881 -7.01106 -5.85058 -3.13949 0.78430 1.86524 2.47089 2.78563 3.36284 3.38807 3.43660 3.43960 3.73579 4.47396 4.51049 4.53738 4.68858 4.81372 4.91792 4.96209 5.08745 5.09681 5.13915 5.20151 5.28975 5.31735 5.44625 5.48008 5.57323 5.61963 5.72509 5.80484 5.88767 5.91217 5.94524 6.00630 6.06068 6.09755 6.15834 6.20705 6.29276 6.34043 6.44872 6.46620 6.48406 6.51954 6.66647 6.74193 6.92565 7.05712 7.62040 7.74593 8.05541 8.33420 8.42438 9.45433 10.00987 10.36674 11.37427 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.011141 B = 0.003444 C = 0.002797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2512.652341 B = 8128.571632 C =10009.794339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.016 3.984 3 C -0.235 4.235 4 C 0.152 3.848 5 N -0.477 5.477 6 C 0.067 3.933 7 C 0.504 3.496 8 O -0.530 6.530 9 N -0.702 5.702 10 C 0.152 3.848 11 H 0.086 0.914 12 C 0.141 3.859 13 N -0.731 5.731 14 C -0.241 4.241 15 H 0.070 0.930 16 C -0.011 4.011 17 N -0.933 5.933 18 Si 0.907 3.093 19 H -0.286 1.286 20 H -0.291 1.291 21 H -0.286 1.286 22 C -0.076 4.076 23 C -0.141 4.141 24 C -0.129 4.129 25 C -0.140 4.140 26 C 0.522 3.478 27 O -0.555 6.555 28 C -0.253 4.253 29 H 0.079 0.921 30 H 0.073 0.927 31 H 0.072 0.928 32 H 0.144 0.856 33 H 0.164 0.836 34 H 0.126 0.874 35 H 0.125 0.875 36 H 0.405 0.595 37 H 0.030 0.970 38 H 0.036 0.964 39 H 0.384 0.616 40 H 0.255 0.745 41 H 0.052 0.948 42 H 0.049 0.951 43 H 0.062 0.938 44 H 0.058 0.942 45 H 0.040 0.960 46 H 0.055 0.945 47 H 0.062 0.938 48 H 0.052 0.948 49 H 0.054 0.946 50 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.204 -9.626 3.362 16.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.013 3.987 3 C -0.258 4.258 4 C 0.025 3.975 5 N -0.187 5.187 6 C -0.059 4.059 7 C 0.288 3.712 8 O -0.406 6.406 9 N -0.353 5.353 10 C 0.047 3.953 11 H 0.104 0.896 12 C 0.014 3.986 13 N -0.376 5.376 14 C -0.372 4.372 15 H 0.088 0.912 16 C -0.207 4.207 17 N -0.581 5.581 18 Si 0.738 3.262 19 H -0.213 1.213 20 H -0.217 1.217 21 H -0.213 1.213 22 C -0.078 4.078 23 C -0.198 4.198 24 C -0.186 4.186 25 C -0.198 4.198 26 C 0.325 3.675 27 O -0.438 6.438 28 C -0.275 4.275 29 H 0.098 0.902 30 H 0.092 0.908 31 H 0.091 0.909 32 H 0.162 0.838 33 H 0.181 0.819 34 H 0.144 0.856 35 H 0.143 0.857 36 H 0.239 0.761 37 H 0.048 0.952 38 H 0.054 0.946 39 H 0.218 0.782 40 H 0.065 0.935 41 H 0.071 0.929 42 H 0.068 0.932 43 H 0.081 0.919 44 H 0.077 0.923 45 H 0.059 0.941 46 H 0.074 0.926 47 H 0.081 0.919 48 H 0.071 0.929 49 H 0.074 0.926 50 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -13.155 -10.248 2.678 16.889 hybrid contribution 0.926 0.943 0.483 1.407 sum -12.229 -9.305 3.162 15.688 Atomic orbital electron populations 1.20914 0.90546 1.03474 1.02913 1.20187 0.96626 0.92733 0.89191 1.20499 0.92366 0.98847 1.14130 1.22002 0.93641 0.89735 0.92140 1.45017 1.07350 1.07193 1.59128 1.21858 0.79430 1.07415 0.97176 1.20409 0.83276 0.76788 0.90694 1.90733 1.55332 1.49214 1.45366 1.45823 1.06122 1.73783 1.09585 1.21282 0.97024 0.94943 0.82033 0.89606 1.21108 0.92308 0.87868 0.97352 1.42335 1.10224 1.13635 1.71370 1.19171 0.88769 0.96866 1.32403 0.91225 1.24719 0.96988 0.97646 1.01391 1.69639 1.24496 1.18771 1.45232 0.86269 0.82590 0.79670 0.77638 1.21284 1.21704 1.21271 1.20903 0.96152 0.95051 0.95671 1.21909 0.99357 0.99130 0.99435 1.21871 0.95345 0.99005 1.02375 1.21885 1.01489 1.01403 0.95037 1.17046 0.89285 0.82466 0.78682 1.90936 1.69192 1.30296 1.53383 1.21867 0.92345 0.99377 1.13890 0.90235 0.90791 0.90950 0.83795 0.81863 0.85572 0.85729 0.76052 0.95244 0.94647 0.78166 0.93486 0.92853 0.93177 0.91936 0.92314 0.94053 0.92639 0.91905 0.92879 0.92643 0.83823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.83 10.03 36.00 0.36 -0.46 16 2 C 0.02 0.17 5.89 -104.55 -0.62 -0.45 16 3 C -0.24 -2.27 9.71 -39.88 -0.39 -2.66 16 4 C 0.15 1.65 10.28 -16.84 -0.17 1.48 16 5 N -0.48 -6.33 2.07 -121.07 -0.25 -6.58 16 6 C 0.07 0.84 5.81 -5.20 -0.03 0.81 16 7 C 0.50 7.87 6.25 -10.99 -0.07 7.80 16 8 O -0.53 -9.90 13.55 5.55 0.08 -9.83 16 9 N -0.70 -10.67 3.64 -53.81 -0.20 -10.87 16 10 C 0.15 2.50 1.69 -67.92 -0.11 2.38 16 11 H 0.09 1.63 7.58 -51.93 -0.39 1.24 16 12 C 0.14 2.64 5.10 -4.04 -0.02 2.62 16 13 N -0.73 -17.22 5.43 -59.91 -0.33 -17.54 16 14 C -0.24 -6.39 9.99 -15.06 -0.15 -6.54 16 15 H 0.07 1.80 7.83 -52.48 -0.41 1.39 16 16 C -0.01 -0.31 5.50 -17.43 -0.10 -0.41 16 17 N -0.93 -26.75 13.06 55.49 0.72 -26.03 16 18 Si 0.91 21.62 29.55 -169.99 -5.02 16.59 16 19 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 20 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 21 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 22 C -0.08 -1.09 0.62 -154.51 -0.10 -1.19 16 23 C -0.14 -1.85 7.97 37.16 0.30 -1.56 16 24 C -0.13 -2.01 7.00 37.16 0.26 -1.75 16 25 C -0.14 -1.86 8.12 37.16 0.30 -1.56 16 26 C 0.52 8.09 7.40 -15.45 -0.11 7.97 16 27 O -0.56 -10.38 16.64 4.87 0.08 -10.30 16 28 C -0.25 -3.22 9.65 -39.38 -0.38 -3.60 16 29 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16 30 H 0.07 0.42 8.10 -51.93 -0.42 0.00 16 31 H 0.07 0.46 8.09 -51.93 -0.42 0.04 16 32 H 0.14 1.01 8.06 -52.49 -0.42 0.59 16 33 H 0.16 1.40 8.03 -52.49 -0.42 0.98 16 34 H 0.13 1.52 7.39 -51.93 -0.38 1.14 16 35 H 0.12 1.21 8.01 -51.92 -0.42 0.79 16 36 H 0.40 5.73 8.60 -40.82 -0.35 5.38 16 37 H 0.03 0.54 6.17 -51.93 -0.32 0.22 16 38 H 0.04 0.68 6.71 -51.93 -0.35 0.33 16 39 H 0.38 9.59 7.33 -40.82 -0.30 9.29 16 40 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 41 H 0.05 0.70 7.60 -51.93 -0.39 0.31 16 42 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 43 H 0.06 0.82 6.32 -51.93 -0.33 0.49 16 44 H 0.06 1.00 7.53 -51.93 -0.39 0.61 16 45 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 46 H 0.05 0.96 5.77 -51.93 -0.30 0.66 16 47 H 0.06 0.83 6.54 -51.93 -0.34 0.49 16 48 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 49 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 50 H 0.14 1.66 8.06 -52.48 -0.42 1.24 16 LS Contribution 399.04 15.07 6.01 6.01 Total: -1.00 -34.11 399.04 -7.96 -42.08 By element: Atomic # 1 Polarization: 21.61 SS G_CDS: -8.03 Total: 13.58 kcal Atomic # 6 Polarization: 3.91 SS G_CDS: -1.03 Total: 2.88 kcal Atomic # 7 Polarization: -60.97 SS G_CDS: -0.05 Total: -61.02 kcal Atomic # 8 Polarization: -20.29 SS G_CDS: 0.16 Total: -20.13 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -34.11 -7.96 -42.08 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755833684.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.132 kcal (2) G-P(sol) polarization free energy of solvation -34.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.077 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds