Wall clock time and date at job start Tue Mar 31 2020 19:51:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.40196 * 120.37368 * 2 1 4 4 C 1.35350 * 119.94963 * 179.76679 * 3 2 1 5 5 N 1.35764 * 120.70161 * 0.51112 * 4 3 2 6 6 C 1.46499 * 119.62258 * 179.75751 * 5 4 3 7 7 C 1.50692 * 109.47445 * 269.72899 * 6 5 4 8 8 O 1.21285 * 120.00172 * 359.97438 * 7 6 5 9 9 N 1.34777 * 120.00099 * 180.02562 * 7 6 5 10 10 C 1.46504 * 119.99976 * 180.02562 * 9 7 6 11 11 H 1.08991 * 109.47119 * 34.99771 * 10 9 7 12 12 C 1.53000 * 109.47054 * 155.00344 * 10 9 7 13 13 N 1.46499 * 109.46840 * 304.99499 * 12 10 9 14 14 C 1.36936 * 120.00002 * 180.02562 * 13 12 10 15 15 H 1.08004 * 120.00140 * 0.02562 * 14 13 12 16 16 C 1.38811 * 120.00367 * 180.02562 * 14 13 12 17 17 N 1.31619 * 119.99972 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 120.00444 * 180.02562 * 16 14 13 19 19 H 1.48502 * 109.47261 * 59.99582 * 18 16 14 20 20 H 1.48502 * 109.47375 * 179.97438 * 18 16 14 21 21 H 1.48499 * 109.46897 * 300.00142 * 18 16 14 22 22 C 1.53006 * 109.46878 * 274.99815 * 10 9 7 23 23 C 1.53003 * 109.47177 * 300.00264 * 22 10 9 24 24 C 1.53000 * 109.46846 * 60.00402 * 22 10 9 25 25 C 1.52996 * 109.46968 * 180.02562 * 22 10 9 26 26 C 1.34654 * 120.75017 * 359.48916 * 5 4 3 27 27 O 1.22055 * 119.98555 * 180.27968 * 26 5 4 28 28 C 1.36400 * 120.36638 * 180.02562 * 2 1 3 29 29 H 1.08992 * 109.47436 * 269.98263 * 1 2 3 30 30 H 1.09006 * 109.46415 * 29.97824 * 1 2 3 31 31 H 1.08994 * 109.47157 * 149.97620 * 1 2 3 32 32 H 1.08002 * 120.02160 * 0.04506 * 3 2 1 33 33 H 1.08002 * 119.64600 * 180.27096 * 4 3 2 34 34 H 1.08999 * 109.46872 * 149.72619 * 6 5 4 35 35 H 1.09008 * 109.47201 * 29.73342 * 6 5 4 36 36 H 0.96996 * 119.99934 * 0.02562 * 9 7 6 37 37 H 1.09002 * 109.47398 * 64.99825 * 12 10 9 38 38 H 1.09001 * 109.47194 * 185.00006 * 12 10 9 39 39 H 0.97000 * 120.00420 * 0.02562 * 13 12 10 40 40 H 0.96996 * 120.00586 * 180.02562 * 17 16 14 41 41 H 1.09000 * 109.46966 * 60.00097 * 23 22 10 42 42 H 1.08998 * 109.46717 * 180.02562 * 23 22 10 43 43 H 1.09001 * 109.46640 * 300.00001 * 23 22 10 44 44 H 1.09001 * 109.47624 * 59.99715 * 24 22 10 45 45 H 1.09002 * 109.46642 * 179.97438 * 24 22 10 46 46 H 1.09002 * 109.47069 * 299.99434 * 24 22 10 47 47 H 1.09001 * 109.47336 * 59.99701 * 25 22 10 48 48 H 1.08998 * 109.47375 * 180.02562 * 25 22 10 49 49 H 1.09001 * 109.47456 * 299.99957 * 25 22 10 50 50 H 1.08008 * 120.34473 * 0.02562 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2159 1.2095 0.0000 4 6 3.5693 1.1995 0.0048 5 7 4.2539 0.0271 -0.0008 6 6 5.7187 0.0439 -0.0009 7 6 6.2211 0.0496 -1.4216 8 8 5.4330 0.0401 -2.3435 9 7 7.5461 0.0643 -1.6678 10 6 8.0344 0.0705 -3.0491 11 1 7.3555 0.6528 -3.6719 12 6 9.4303 0.6954 -3.0937 13 7 9.3892 2.0263 -2.4828 14 6 10.5291 2.7814 -2.4093 15 1 11.4585 2.3960 -2.8020 16 6 10.4904 4.0422 -1.8299 17 7 9.3578 4.5122 -1.3517 18 14 12.0453 5.0726 -1.7303 19 1 12.5620 5.3228 -3.0998 20 1 11.7392 6.3685 -1.0728 21 1 13.0708 4.3458 -0.9395 22 6 8.1016 -1.3657 -3.5726 23 6 9.0547 -2.1832 -2.6983 24 6 6.7058 -1.9906 -3.5280 25 6 8.6122 -1.3593 -5.0149 26 6 3.6017 -1.1509 -0.0009 27 8 4.2311 -2.1967 -0.0008 28 6 2.1965 -1.1769 -0.0005 29 1 -0.3634 -0.0003 1.0276 30 1 -0.3632 0.8903 -0.5135 31 1 -0.3633 -0.8897 -0.5142 32 1 1.6823 2.1486 0.0007 33 1 4.1105 2.1342 0.0092 34 1 6.0922 -0.8418 0.5130 35 1 6.0719 0.9380 0.5131 36 1 8.1763 0.0708 -0.9306 37 1 10.1286 0.0645 -2.5438 38 1 9.7569 0.7813 -4.1301 39 1 8.5545 2.3726 -2.1303 40 1 9.3306 5.3934 -0.9472 41 1 8.6913 -2.1877 -1.6707 42 1 9.1028 -3.2061 -3.0716 43 1 10.0490 -1.7379 -2.7302 44 1 6.0268 -1.4082 -4.1508 45 1 6.7536 -3.0135 -3.9014 46 1 6.3425 -1.9952 -2.5003 47 1 9.6067 -0.9141 -5.0463 48 1 8.6597 -2.3823 -5.3880 49 1 7.9336 -0.7768 -5.6380 50 1 1.6681 -2.1189 -0.0014 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755833684.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:51:19 Heat of formation + Delta-G solvation = -54.599709 kcal Electronic energy + Delta-G solvation = -30278.724080 eV Core-core repulsion = 26305.735820 eV Total energy + Delta-G solvation = -3972.988261 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -42.53856 -41.14567 -38.75079 -38.07671 -36.23601 -36.13812 -34.68570 -33.00652 -31.43656 -30.49069 -29.39379 -28.27881 -28.18942 -27.31549 -25.54668 -24.64957 -23.26669 -22.63947 -21.69930 -19.91939 -19.27449 -18.53040 -18.44767 -18.37560 -17.08053 -17.03151 -16.87362 -16.52011 -16.18148 -15.51767 -15.40881 -15.17307 -15.13857 -14.87836 -14.76570 -14.71416 -14.25196 -14.14663 -13.71326 -13.60981 -13.35264 -13.17247 -13.02990 -12.98238 -12.96430 -12.81089 -12.72704 -12.56502 -12.46106 -12.38888 -12.21967 -12.05098 -11.75373 -11.68708 -11.34130 -11.20416 -11.06593 -10.89958 -10.53015 -9.94949 -8.98491 -8.96200 -7.92093 -5.20285 -0.11526 0.92063 1.47396 1.50808 1.52223 1.55050 1.57993 2.21828 2.57807 2.71491 3.42170 3.57839 3.64530 3.65712 3.73614 3.83532 3.88588 3.99879 4.09529 4.16433 4.23502 4.32713 4.33403 4.39423 4.42315 4.60528 4.75089 4.78492 4.79271 4.84330 4.88012 4.91006 4.92919 5.02127 5.04439 5.11008 5.13630 5.19850 5.23776 5.27207 5.39566 5.47891 5.48431 5.54261 5.60336 5.65617 6.07461 6.29216 6.49780 6.97705 7.18480 7.37253 8.09436 8.34891 9.30554 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.011141 B = 0.003444 C = 0.002797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2512.652341 B = 8128.571632 C =10009.794339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.032 3.968 3 C -0.228 4.228 4 C 0.135 3.865 5 N -0.479 5.479 6 C 0.070 3.930 7 C 0.502 3.498 8 O -0.564 6.564 9 N -0.698 5.698 10 C 0.163 3.837 11 H 0.057 0.943 12 C 0.146 3.854 13 N -0.740 5.740 14 C -0.243 4.243 15 H 0.076 0.924 16 C -0.068 4.068 17 N -0.964 5.964 18 Si 0.968 3.032 19 H -0.283 1.283 20 H -0.297 1.297 21 H -0.278 1.278 22 C -0.070 4.070 23 C -0.137 4.137 24 C -0.116 4.116 25 C -0.138 4.138 26 C 0.504 3.496 27 O -0.607 6.607 28 C -0.287 4.287 29 H 0.099 0.901 30 H 0.092 0.908 31 H 0.075 0.925 32 H 0.179 0.821 33 H 0.187 0.813 34 H 0.129 0.871 35 H 0.156 0.844 36 H 0.411 0.589 37 H 0.045 0.955 38 H 0.037 0.963 39 H 0.375 0.625 40 H 0.250 0.750 41 H 0.050 0.950 42 H 0.065 0.935 43 H 0.065 0.935 44 H 0.037 0.963 45 H 0.055 0.945 46 H 0.034 0.966 47 H 0.065 0.935 48 H 0.072 0.928 49 H 0.047 0.953 50 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.238 -9.179 3.600 16.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.028 3.972 3 C -0.250 4.250 4 C 0.009 3.991 5 N -0.188 5.188 6 C -0.055 4.055 7 C 0.288 3.712 8 O -0.443 6.443 9 N -0.349 5.349 10 C 0.058 3.942 11 H 0.075 0.925 12 C 0.020 3.980 13 N -0.383 5.383 14 C -0.375 4.375 15 H 0.093 0.907 16 C -0.261 4.261 17 N -0.614 5.614 18 Si 0.798 3.202 19 H -0.210 1.210 20 H -0.224 1.224 21 H -0.204 1.204 22 C -0.072 4.072 23 C -0.194 4.194 24 C -0.174 4.174 25 C -0.196 4.196 26 C 0.310 3.690 27 O -0.495 6.495 28 C -0.308 4.308 29 H 0.117 0.883 30 H 0.110 0.890 31 H 0.094 0.906 32 H 0.196 0.804 33 H 0.204 0.796 34 H 0.147 0.853 35 H 0.173 0.827 36 H 0.247 0.753 37 H 0.062 0.938 38 H 0.054 0.946 39 H 0.208 0.792 40 H 0.059 0.941 41 H 0.069 0.931 42 H 0.084 0.916 43 H 0.084 0.916 44 H 0.056 0.944 45 H 0.074 0.926 46 H 0.053 0.947 47 H 0.084 0.916 48 H 0.090 0.910 49 H 0.066 0.934 50 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -13.176 -9.804 2.913 16.679 hybrid contribution 0.850 0.832 0.364 1.244 sum -12.326 -8.972 3.276 15.593 Atomic orbital electron populations 1.21026 0.87719 1.04577 1.04400 1.20626 0.98615 0.91879 0.86049 1.21017 0.92076 1.00049 1.11897 1.22575 0.94605 0.89644 0.92288 1.45031 1.07574 1.07496 1.58693 1.21932 0.79473 1.08970 0.95159 1.20910 0.82929 0.75718 0.91666 1.90711 1.56088 1.50799 1.46743 1.45767 1.06346 1.73508 1.09293 1.21050 0.94982 0.95780 0.82435 0.92514 1.21191 0.93851 0.86010 0.96984 1.42467 1.09118 1.15127 1.71596 1.19542 0.89713 0.97116 1.31147 0.90652 1.25440 0.99609 0.98981 1.02050 1.69779 1.26225 1.18824 1.46577 0.85298 0.79580 0.77832 0.77505 1.20990 1.22373 1.20367 1.20856 0.95912 0.93584 0.96827 1.21871 0.98829 0.99721 0.98978 1.21726 0.95514 0.99532 1.00608 1.21875 1.01235 1.02574 0.93927 1.17512 0.90325 0.82464 0.78721 1.90882 1.70189 1.31915 1.56495 1.21911 0.91399 1.00777 1.16759 0.88298 0.88960 0.90602 0.80359 0.79604 0.85335 0.82666 0.75331 0.93777 0.94565 0.79245 0.94080 0.93132 0.91633 0.91568 0.94380 0.92594 0.94696 0.91633 0.90953 0.93389 0.83728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.31 10.03 71.24 0.71 -0.59 16 2 C 0.03 0.61 5.89 -19.82 -0.12 0.49 16 3 C -0.23 -3.89 9.71 22.08 0.21 -3.68 16 4 C 0.14 2.77 10.28 83.42 0.86 3.63 16 5 N -0.48 -12.84 2.07 -655.08 -1.36 -14.20 16 6 C 0.07 1.77 5.81 85.63 0.50 2.27 16 7 C 0.50 16.07 6.25 87.65 0.55 16.62 16 8 O -0.56 -21.91 13.55 -3.04 -0.04 -21.95 16 9 N -0.70 -21.45 3.64 -442.53 -1.61 -23.06 16 10 C 0.16 5.38 1.69 44.99 0.08 5.46 16 11 H 0.06 2.23 7.58 -2.39 -0.02 2.21 16 12 C 0.15 5.36 5.10 86.38 0.44 5.80 16 13 N -0.74 -34.68 5.43 -343.45 -1.87 -36.55 16 14 C -0.24 -12.74 9.99 84.03 0.84 -11.90 16 15 H 0.08 3.79 7.83 -2.91 -0.02 3.76 16 16 C -0.07 -3.69 5.50 84.86 0.47 -3.22 16 17 N -0.96 -55.37 13.06 21.65 0.28 -55.09 16 18 Si 0.97 44.05 29.55 68.60 2.03 46.08 16 19 H -0.28 -12.64 7.11 99.48 0.71 -11.94 16 20 H -0.30 -13.72 7.11 99.48 0.71 -13.01 16 21 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 22 C -0.07 -1.98 0.62 -52.18 -0.03 -2.01 16 23 C -0.14 -3.38 7.97 71.98 0.57 -2.80 16 24 C -0.12 -3.67 7.00 71.98 0.50 -3.17 16 25 C -0.14 -3.49 8.12 71.98 0.58 -2.91 16 26 C 0.50 16.28 7.40 84.82 0.63 16.90 16 27 O -0.61 -24.15 16.64 -5.50 -0.09 -24.24 16 28 C -0.29 -7.47 9.65 22.40 0.22 -7.25 16 29 H 0.10 0.77 8.14 -2.39 -0.02 0.75 16 30 H 0.09 0.71 8.10 -2.38 -0.02 0.69 16 31 H 0.08 0.81 8.09 -2.39 -0.02 0.79 16 32 H 0.18 1.79 8.06 -2.91 -0.02 1.76 16 33 H 0.19 2.85 8.03 -2.91 -0.02 2.83 16 34 H 0.13 3.21 7.39 -2.39 -0.02 3.19 16 35 H 0.16 2.88 8.01 -2.38 -0.02 2.86 16 36 H 0.41 11.58 8.60 -92.71 -0.80 10.78 16 37 H 0.04 1.53 6.17 -2.39 -0.01 1.52 16 38 H 0.04 1.36 6.71 -2.39 -0.02 1.34 16 39 H 0.38 18.86 7.33 -92.71 -0.68 18.18 16 40 H 0.25 14.08 8.31 -92.71 -0.77 13.31 16 41 H 0.05 1.27 7.60 -2.39 -0.02 1.26 16 42 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 43 H 0.07 1.59 6.32 -2.39 -0.02 1.57 16 44 H 0.04 1.33 7.53 -2.39 -0.02 1.32 16 45 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 46 H 0.03 1.24 5.77 -2.39 -0.01 1.22 16 47 H 0.06 1.62 6.54 -2.39 -0.02 1.60 16 48 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 49 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 50 H 0.14 3.53 8.06 -2.91 -0.02 3.51 16 Total: -1.00 -75.39 399.04 3.83 -71.56 By element: Atomic # 1 Polarization: 44.33 SS G_CDS: -0.52 Total: 43.81 kcal Atomic # 6 Polarization: 6.62 SS G_CDS: 7.01 Total: 13.64 kcal Atomic # 7 Polarization: -124.34 SS G_CDS: -4.55 Total: -128.89 kcal Atomic # 8 Polarization: -46.06 SS G_CDS: -0.13 Total: -46.19 kcal Atomic # 14 Polarization: 44.05 SS G_CDS: 2.03 Total: 46.08 kcal Total: -75.39 3.83 -71.56 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755833684.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.962 kcal (2) G-P(sol) polarization free energy of solvation -75.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.561 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds