Wall clock time and date at job start Tue Mar 31 2020 19:24:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.30182 * 126.80661 * 2 1 4 4 O 1.20915 * 111.60523 * 180.02562 * 3 2 1 5 5 C 1.34035 * 111.57076 * 359.75331 * 4 3 2 6 6 C 1.50698 * 126.78083 * 180.29011 * 5 4 3 7 7 C 1.35451 * 106.44590 * 0.38511 * 5 4 3 8 8 C 1.50700 * 128.01108 * 179.90922 * 7 5 4 9 9 C 1.53001 * 109.47164 * 276.52249 * 8 7 5 10 10 C 1.52999 * 109.47271 * 156.52069 * 8 7 5 11 11 C 1.50704 * 109.46928 * 36.51659 * 8 7 5 12 12 O 1.21277 * 120.00250 * 243.83339 * 11 8 7 13 13 N 1.34776 * 119.99618 * 63.83454 * 11 8 7 14 14 C 1.48214 * 119.97168 * 354.93207 * 13 11 8 15 15 C 1.47140 * 110.34430 * 102.46432 * 14 13 11 16 16 C 1.53235 * 111.81510 * 58.22659 * 15 14 13 17 17 N 1.43470 * 108.26285 * 281.67801 * 16 15 14 18 18 C 1.36930 * 118.93692 * 273.78195 * 17 16 15 19 19 H 1.08000 * 120.00499 * 27.66868 * 18 17 16 20 20 C 1.38816 * 119.99839 * 207.66837 * 18 17 16 21 21 N 1.31619 * 119.99815 * 25.98257 * 20 18 17 22 22 Si 1.86798 * 120.00092 * 205.97637 * 20 18 17 23 23 H 1.48505 * 109.47217 * 180.02562 * 22 20 18 24 24 H 1.48501 * 109.47238 * 60.00484 * 22 20 18 25 25 H 1.48496 * 109.47174 * 300.00007 * 22 20 18 26 26 C 1.48857 * 122.11727 * 93.50215 * 17 16 15 27 27 C 1.43627 * 119.96966 * 174.90679 * 13 11 8 28 28 H 1.09001 * 109.47228 * 266.05866 * 1 2 3 29 29 H 1.09000 * 109.46861 * 26.05002 * 1 2 3 30 30 H 1.08992 * 109.47532 * 146.04941 * 1 2 3 31 31 H 1.08997 * 109.47710 * 271.23906 * 6 5 4 32 32 H 1.09004 * 109.47196 * 31.24055 * 6 5 4 33 33 H 1.09007 * 109.47636 * 151.23664 * 6 5 4 34 34 H 1.08997 * 109.47174 * 184.70427 * 9 8 7 35 35 H 1.08999 * 109.46791 * 304.70611 * 9 8 7 36 36 H 1.09001 * 109.47385 * 64.70534 * 9 8 7 37 37 H 1.09000 * 109.46957 * 317.72607 * 10 8 7 38 38 H 1.08998 * 109.46806 * 77.73084 * 10 8 7 39 39 H 1.09002 * 109.46667 * 197.73100 * 10 8 7 40 40 H 1.09005 * 109.31750 * 222.72775 * 14 13 11 41 41 H 1.08992 * 109.32719 * 342.37132 * 14 13 11 42 42 H 1.09005 * 109.00670 * 178.90260 * 15 14 13 43 43 H 1.09004 * 109.00738 * 297.76426 * 15 14 13 44 44 H 1.09003 * 109.49491 * 162.04408 * 16 15 14 45 45 H 1.09003 * 109.74017 * 41.45527 * 16 15 14 46 46 H 0.96994 * 120.00376 * 5.80645 * 21 20 18 47 47 H 1.08995 * 109.48221 * 80.88521 * 26 17 16 48 48 H 1.09004 * 109.47703 * 200.91291 * 26 17 16 49 49 H 1.08998 * 108.87158 * 149.91221 * 27 13 11 50 50 H 1.09000 * 108.87091 * 31.47446 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2869 1.0423 0.0000 4 8 3.4537 0.7253 -0.0005 5 6 3.6024 -0.6068 0.0045 6 6 4.9021 -1.3696 0.0116 7 6 2.3539 -1.1321 -0.0004 8 6 1.9589 -2.5864 0.0003 9 6 1.9900 -3.1239 -1.4319 10 6 0.5459 -2.7308 0.5687 11 6 2.9254 -3.3690 0.8515 12 8 3.6253 -4.2212 0.3469 13 7 3.0118 -3.1217 2.1736 14 6 2.2399 -2.0060 2.7702 15 6 1.0515 -2.5217 3.4678 16 6 1.4257 -3.5209 4.5676 17 7 1.7195 -4.7815 3.9488 18 6 0.6920 -5.6500 3.6940 19 1 -0.3054 -5.2718 3.5249 20 6 0.9323 -7.0165 3.6530 21 7 1.9417 -7.5277 4.3256 22 14 -0.1769 -8.1301 2.6435 23 1 0.2887 -9.5350 2.7657 24 1 -0.1304 -7.7149 1.2185 25 1 -1.5709 -8.0259 3.1444 26 6 3.1046 -5.1730 3.5693 27 6 3.8515 -3.9401 3.0031 28 1 -0.3634 -0.0706 1.0252 29 1 -0.3633 0.9233 -0.4513 30 1 -0.3634 -0.8524 -0.5739 31 1 5.2304 -1.5378 -1.0140 32 1 5.6583 -0.7940 0.5454 33 1 4.7577 -2.3289 0.5088 34 1 1.6245 -4.1507 -1.4425 35 1 1.3546 -2.5055 -2.0659 36 1 3.0129 -3.0984 -1.8075 37 1 0.4363 -2.0833 1.4387 38 1 -0.1821 -2.4456 -0.1907 39 1 0.3769 -3.7666 0.8632 40 1 2.8705 -1.4701 3.4797 41 1 1.9241 -1.3235 1.9813 42 1 0.5115 -1.6865 3.9140 43 1 0.4033 -3.0179 2.7455 44 1 0.5882 -3.6347 5.2560 45 1 2.3019 -3.1626 5.1081 46 1 2.4660 -6.9643 4.9159 47 1 3.6310 -5.5449 4.4482 48 1 3.0664 -5.9548 2.8106 49 1 4.2197 -3.3386 3.8342 50 1 4.7023 -4.2828 2.4143 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000981804607.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:24:36 Heat of formation + Delta-G solvation = 69.337056 kcal Electronic energy + Delta-G solvation = -32962.798213 eV Core-core repulsion = 28995.184254 eV Total energy + Delta-G solvation = -3967.613959 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -45.08196 -40.63472 -37.39172 -36.54621 -34.54073 -33.84801 -32.89184 -32.27122 -30.85918 -29.19432 -27.85258 -27.74166 -26.91944 -25.29384 -24.37864 -23.35950 -22.63963 -21.07597 -20.36402 -19.64044 -18.38106 -17.69168 -17.38840 -17.02532 -16.36534 -16.19226 -15.37609 -14.70627 -14.35317 -14.26590 -14.19225 -13.76083 -13.58947 -13.46289 -13.43228 -13.31407 -13.10905 -12.81316 -12.74607 -12.59666 -12.39785 -12.23852 -11.98497 -11.85558 -11.73278 -11.36604 -11.24951 -11.06184 -11.04791 -10.92422 -10.69847 -10.39936 -10.24909 -10.17390 -9.99077 -9.88187 -9.47837 -9.35369 -8.95268 -8.31527 -8.17374 -6.86985 -6.04781 -3.23780 1.35922 2.07729 2.85049 3.05972 3.39324 3.48335 3.54076 3.70218 4.03903 4.33375 4.48037 4.61040 4.72700 4.85705 5.03456 5.11062 5.15317 5.24185 5.26246 5.33171 5.35973 5.40502 5.48015 5.51652 5.54523 5.63503 5.65977 5.69513 5.76341 5.85184 5.88783 5.93606 5.95739 5.98658 6.00052 6.09905 6.20879 6.27343 6.29196 6.31632 6.42534 6.68943 6.70662 6.88374 7.10350 7.17140 7.76055 8.04267 8.18621 8.53421 8.59285 9.17088 9.85534 10.26769 11.21593 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.015905 B = 0.004694 C = 0.004591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1759.983946 B = 5963.708858 C = 6097.632020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.032 3.968 3 N -0.367 5.367 4 O 0.095 5.905 5 C -0.021 4.021 6 C -0.087 4.087 7 C -0.184 4.184 8 C 0.001 3.999 9 C -0.123 4.123 10 C -0.163 4.163 11 C 0.532 3.468 12 O -0.540 6.540 13 N -0.577 5.577 14 C 0.112 3.888 15 C -0.187 4.187 16 C 0.166 3.834 17 N -0.592 5.592 18 C -0.355 4.355 19 H 0.052 0.948 20 C -0.016 4.016 21 N -0.912 5.912 22 Si 1.055 2.945 23 H -0.285 1.285 24 H -0.293 1.293 25 H -0.293 1.293 26 C 0.142 3.858 27 C 0.095 3.905 28 H 0.083 0.917 29 H 0.073 0.927 30 H 0.090 0.910 31 H 0.089 0.911 32 H 0.082 0.918 33 H 0.102 0.898 34 H 0.070 0.930 35 H 0.058 0.942 36 H 0.063 0.937 37 H 0.083 0.917 38 H 0.067 0.933 39 H 0.080 0.920 40 H 0.060 0.940 41 H 0.081 0.919 42 H 0.055 0.945 43 H 0.087 0.913 44 H 0.046 0.954 45 H 0.029 0.971 46 H 0.268 0.732 47 H 0.032 0.968 48 H 0.070 0.930 49 H 0.058 0.942 50 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.170 15.158 -7.766 17.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.128 4.128 3 N -0.074 5.074 4 O 0.031 5.969 5 C -0.084 4.084 6 C -0.144 4.144 7 C -0.189 4.189 8 C -0.003 4.003 9 C -0.181 4.181 10 C -0.220 4.220 11 C 0.320 3.680 12 O -0.418 6.418 13 N -0.307 5.307 14 C -0.010 4.010 15 C -0.228 4.228 16 C 0.038 3.962 17 N -0.314 5.314 18 C -0.485 4.485 19 H 0.070 0.930 20 C -0.219 4.219 21 N -0.551 5.551 22 Si 0.885 3.115 23 H -0.211 1.211 24 H -0.221 1.221 25 H -0.220 1.220 26 C 0.016 3.984 27 C -0.030 4.030 28 H 0.102 0.898 29 H 0.092 0.908 30 H 0.108 0.892 31 H 0.107 0.893 32 H 0.101 0.899 33 H 0.120 0.880 34 H 0.089 0.911 35 H 0.077 0.923 36 H 0.082 0.918 37 H 0.101 0.899 38 H 0.086 0.914 39 H 0.098 0.902 40 H 0.078 0.922 41 H 0.099 0.901 42 H 0.073 0.927 43 H 0.105 0.895 44 H 0.064 0.936 45 H 0.047 0.953 46 H 0.080 0.920 47 H 0.050 0.950 48 H 0.089 0.911 49 H 0.077 0.923 50 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 1.138 14.447 -8.499 16.800 hybrid contribution -0.011 0.907 0.663 1.123 sum 1.128 15.354 -7.837 17.275 Atomic orbital electron populations 1.20489 0.85982 1.03917 1.03779 1.23345 0.98845 0.88017 1.02545 1.73834 0.89266 1.23788 1.20513 1.84789 1.21614 1.22400 1.68110 1.24239 0.98244 0.83586 1.02370 1.20620 0.89966 0.99437 1.04381 1.20595 0.91866 0.96147 1.10262 1.19058 0.96458 0.87620 0.97138 1.21663 1.02700 1.01398 0.92289 1.22693 0.92859 1.04785 1.01658 1.20044 0.82634 0.83002 0.82363 1.90682 1.44135 1.34293 1.72702 1.47262 1.45477 1.31333 1.06665 1.21046 0.93831 0.88288 0.97788 1.22161 0.98100 1.00406 1.02146 1.20111 0.97638 0.86398 0.92070 1.43661 1.03404 1.15834 1.68538 1.19821 0.90352 0.89056 1.49234 0.92994 1.25717 1.01237 0.95162 0.99792 1.70799 1.21648 1.38067 1.24606 0.83670 0.74974 0.76531 0.76290 1.21099 1.22078 1.22050 1.22031 0.85012 0.93937 0.97416 1.21791 0.93577 0.93998 0.93631 0.89846 0.90783 0.89174 0.89287 0.89942 0.88004 0.91076 0.92270 0.91783 0.89865 0.91413 0.90160 0.92154 0.90121 0.92695 0.89499 0.93551 0.95297 0.92045 0.95018 0.91128 0.92320 0.90726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.81 8.75 36.00 0.32 -0.49 16 2 C 0.03 0.39 6.47 -82.10 -0.53 -0.14 16 3 N -0.37 -5.02 12.07 33.42 0.40 -4.61 16 4 O 0.09 1.26 11.20 17.19 0.19 1.45 16 5 C -0.02 -0.27 7.37 -35.30 -0.26 -0.53 16 6 C -0.09 -0.98 10.15 36.00 0.37 -0.61 16 7 C -0.18 -2.40 2.64 -104.42 -0.28 -2.68 16 8 C 0.00 0.02 0.70 -156.81 -0.11 -0.09 16 9 C -0.12 -1.66 7.76 37.16 0.29 -1.37 16 10 C -0.16 -2.24 5.45 37.16 0.20 -2.03 16 11 C 0.53 9.21 3.74 -10.98 -0.04 9.17 16 12 O -0.54 -10.95 14.58 5.56 0.08 -10.86 16 13 N -0.58 -9.70 2.37 -176.66 -0.42 -10.12 16 14 C 0.11 1.66 4.81 -5.91 -0.03 1.63 16 15 C -0.19 -2.99 4.78 -29.42 -0.14 -3.13 16 16 C 0.17 3.22 5.59 -5.52 -0.03 3.19 16 17 N -0.59 -13.75 2.39 -172.35 -0.41 -14.16 16 18 C -0.36 -9.43 9.11 -15.06 -0.14 -9.57 16 19 H 0.05 1.39 7.95 -52.49 -0.42 0.98 16 20 C -0.02 -0.45 4.61 -17.43 -0.08 -0.53 16 21 N -0.91 -26.88 12.66 55.49 0.70 -26.18 16 22 Si 1.06 25.26 29.99 -169.99 -5.10 20.16 16 23 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 24 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 25 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 26 C 0.14 3.21 5.07 -1.75 -0.01 3.21 16 27 C 0.10 1.72 5.29 -4.58 -0.02 1.69 16 28 H 0.08 0.73 7.76 -51.93 -0.40 0.33 16 29 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.09 0.77 5.64 -51.93 -0.29 0.48 16 31 H 0.09 0.88 8.14 -51.93 -0.42 0.45 16 32 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 33 H 0.10 1.39 4.51 -51.93 -0.23 1.16 16 34 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 35 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 36 H 0.06 0.88 7.91 -51.93 -0.41 0.47 16 37 H 0.08 1.09 2.84 -51.93 -0.15 0.95 16 38 H 0.07 0.74 5.78 -51.93 -0.30 0.44 16 39 H 0.08 1.36 7.62 -51.93 -0.40 0.97 16 40 H 0.06 0.83 8.06 -51.93 -0.42 0.42 16 41 H 0.08 1.11 2.90 -51.93 -0.15 0.96 16 42 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 43 H 0.09 1.53 4.77 -51.93 -0.25 1.28 16 44 H 0.05 0.94 8.02 -51.93 -0.42 0.52 16 45 H 0.03 0.52 7.58 -51.93 -0.39 0.13 16 46 H 0.27 7.91 6.37 -40.82 -0.26 7.65 16 47 H 0.03 0.75 7.10 -51.93 -0.37 0.38 16 48 H 0.07 1.88 7.04 -51.93 -0.37 1.51 16 49 H 0.06 0.94 7.73 -51.93 -0.40 0.54 16 50 H 0.07 1.35 7.30 -51.93 -0.38 0.97 16 LS Contribution 364.60 15.07 5.49 5.49 Total: -1.00 -31.27 364.60 -6.89 -38.16 By element: Atomic # 1 Polarization: 10.29 SS G_CDS: -7.34 Total: 2.96 kcal Atomic # 6 Polarization: -1.79 SS G_CDS: -0.50 Total: -2.29 kcal Atomic # 7 Polarization: -55.35 SS G_CDS: 0.28 Total: -55.07 kcal Atomic # 8 Polarization: -9.69 SS G_CDS: 0.27 Total: -9.42 kcal Atomic # 14 Polarization: 25.26 SS G_CDS: -5.10 Total: 20.16 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -31.27 -6.89 -38.16 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981804607.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.498 kcal (2) G-P(sol) polarization free energy of solvation -31.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.161 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds