Wall clock time and date at job start Tue Mar 31 2020 19:24:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.30182 * 126.80661 * 2 1 4 4 O 1.20915 * 111.60523 * 180.02562 * 3 2 1 5 5 C 1.34035 * 111.57076 * 359.75331 * 4 3 2 6 6 C 1.50698 * 126.78083 * 180.29011 * 5 4 3 7 7 C 1.35451 * 106.44590 * 0.38511 * 5 4 3 8 8 C 1.50700 * 128.01108 * 179.90922 * 7 5 4 9 9 C 1.53001 * 109.47164 * 276.52249 * 8 7 5 10 10 C 1.52999 * 109.47271 * 156.52069 * 8 7 5 11 11 C 1.50704 * 109.46928 * 36.51659 * 8 7 5 12 12 O 1.21277 * 120.00250 * 243.83339 * 11 8 7 13 13 N 1.34776 * 119.99618 * 63.83454 * 11 8 7 14 14 C 1.48214 * 119.97168 * 354.93207 * 13 11 8 15 15 C 1.47140 * 110.34430 * 102.46432 * 14 13 11 16 16 C 1.53235 * 111.81510 * 58.22659 * 15 14 13 17 17 N 1.43470 * 108.26285 * 281.67801 * 16 15 14 18 18 C 1.36930 * 118.93692 * 273.78195 * 17 16 15 19 19 H 1.08000 * 120.00499 * 27.66868 * 18 17 16 20 20 C 1.38816 * 119.99839 * 207.66837 * 18 17 16 21 21 N 1.31619 * 119.99815 * 25.98257 * 20 18 17 22 22 Si 1.86798 * 120.00092 * 205.97637 * 20 18 17 23 23 H 1.48505 * 109.47217 * 180.02562 * 22 20 18 24 24 H 1.48501 * 109.47238 * 60.00484 * 22 20 18 25 25 H 1.48496 * 109.47174 * 300.00007 * 22 20 18 26 26 C 1.48857 * 122.11727 * 93.50215 * 17 16 15 27 27 C 1.43627 * 119.96966 * 174.90679 * 13 11 8 28 28 H 1.09001 * 109.47228 * 266.05866 * 1 2 3 29 29 H 1.09000 * 109.46861 * 26.05002 * 1 2 3 30 30 H 1.08992 * 109.47532 * 146.04941 * 1 2 3 31 31 H 1.08997 * 109.47710 * 271.23906 * 6 5 4 32 32 H 1.09004 * 109.47196 * 31.24055 * 6 5 4 33 33 H 1.09007 * 109.47636 * 151.23664 * 6 5 4 34 34 H 1.08997 * 109.47174 * 184.70427 * 9 8 7 35 35 H 1.08999 * 109.46791 * 304.70611 * 9 8 7 36 36 H 1.09001 * 109.47385 * 64.70534 * 9 8 7 37 37 H 1.09000 * 109.46957 * 317.72607 * 10 8 7 38 38 H 1.08998 * 109.46806 * 77.73084 * 10 8 7 39 39 H 1.09002 * 109.46667 * 197.73100 * 10 8 7 40 40 H 1.09005 * 109.31750 * 222.72775 * 14 13 11 41 41 H 1.08992 * 109.32719 * 342.37132 * 14 13 11 42 42 H 1.09005 * 109.00670 * 178.90260 * 15 14 13 43 43 H 1.09004 * 109.00738 * 297.76426 * 15 14 13 44 44 H 1.09003 * 109.49491 * 162.04408 * 16 15 14 45 45 H 1.09003 * 109.74017 * 41.45527 * 16 15 14 46 46 H 0.96994 * 120.00376 * 5.80645 * 21 20 18 47 47 H 1.08995 * 109.48221 * 80.88521 * 26 17 16 48 48 H 1.09004 * 109.47703 * 200.91291 * 26 17 16 49 49 H 1.08998 * 108.87158 * 149.91221 * 27 13 11 50 50 H 1.09000 * 108.87091 * 31.47446 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2869 1.0423 0.0000 4 8 3.4537 0.7253 -0.0005 5 6 3.6024 -0.6068 0.0045 6 6 4.9021 -1.3696 0.0116 7 6 2.3539 -1.1321 -0.0004 8 6 1.9589 -2.5864 0.0003 9 6 1.9900 -3.1239 -1.4319 10 6 0.5459 -2.7308 0.5687 11 6 2.9254 -3.3690 0.8515 12 8 3.6253 -4.2212 0.3469 13 7 3.0118 -3.1217 2.1736 14 6 2.2399 -2.0060 2.7702 15 6 1.0515 -2.5217 3.4678 16 6 1.4257 -3.5209 4.5676 17 7 1.7195 -4.7815 3.9488 18 6 0.6920 -5.6500 3.6940 19 1 -0.3054 -5.2718 3.5249 20 6 0.9323 -7.0165 3.6530 21 7 1.9417 -7.5277 4.3256 22 14 -0.1769 -8.1301 2.6435 23 1 0.2887 -9.5350 2.7657 24 1 -0.1304 -7.7149 1.2185 25 1 -1.5709 -8.0259 3.1444 26 6 3.1046 -5.1730 3.5693 27 6 3.8515 -3.9401 3.0031 28 1 -0.3634 -0.0706 1.0252 29 1 -0.3633 0.9233 -0.4513 30 1 -0.3634 -0.8524 -0.5739 31 1 5.2304 -1.5378 -1.0140 32 1 5.6583 -0.7940 0.5454 33 1 4.7577 -2.3289 0.5088 34 1 1.6245 -4.1507 -1.4425 35 1 1.3546 -2.5055 -2.0659 36 1 3.0129 -3.0984 -1.8075 37 1 0.4363 -2.0833 1.4387 38 1 -0.1821 -2.4456 -0.1907 39 1 0.3769 -3.7666 0.8632 40 1 2.8705 -1.4701 3.4797 41 1 1.9241 -1.3235 1.9813 42 1 0.5115 -1.6865 3.9140 43 1 0.4033 -3.0179 2.7455 44 1 0.5882 -3.6347 5.2560 45 1 2.3019 -3.1626 5.1081 46 1 2.4660 -6.9643 4.9159 47 1 3.6310 -5.5449 4.4482 48 1 3.0664 -5.9548 2.8106 49 1 4.2197 -3.3386 3.8342 50 1 4.7023 -4.2828 2.4143 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000981804607.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:24:35 Heat of formation + Delta-G solvation = 51.292078 kcal Electronic energy + Delta-G solvation = -32963.580702 eV Core-core repulsion = 28995.184254 eV Total energy + Delta-G solvation = -3968.396448 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -46.05377 -41.94953 -38.94424 -37.73615 -36.20989 -34.81616 -34.20983 -33.53785 -32.66282 -30.07989 -29.44707 -28.68217 -28.03285 -26.89488 -25.93864 -24.70555 -24.01772 -22.28862 -21.37606 -21.29987 -19.65537 -19.26397 -18.69836 -18.23423 -17.70496 -17.36766 -16.68879 -16.18036 -16.04887 -15.59913 -15.49549 -15.31500 -14.82651 -14.80788 -14.38453 -14.37529 -14.25359 -14.06329 -13.90359 -13.84827 -13.64117 -13.44891 -13.27313 -13.03195 -12.90858 -12.78417 -12.63436 -12.45935 -12.33069 -12.27537 -12.07780 -12.02864 -11.92817 -11.91373 -11.59574 -11.19460 -10.94158 -10.62334 -10.38200 -10.03632 -9.62131 -8.85194 -8.17123 -5.34764 0.38397 1.12526 1.52858 1.54788 1.61293 1.77683 2.02802 2.11574 2.65487 3.10245 3.23033 3.27330 3.47525 3.59184 3.69663 3.80002 3.89975 3.99112 4.14224 4.17304 4.23264 4.32797 4.38770 4.44031 4.49819 4.51932 4.60220 4.64339 4.65585 4.67778 4.73287 4.76106 4.83777 4.84447 4.88376 4.93536 4.96686 5.03312 5.04005 5.10250 5.16981 5.17990 5.22807 5.36100 5.51463 5.71780 5.91613 6.41185 6.46045 7.16169 7.19522 7.23018 7.83852 8.27099 9.05505 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.015905 B = 0.004694 C = 0.004591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1759.983946 B = 5963.708858 C = 6097.632020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C 0.040 3.960 3 N -0.384 5.384 4 O 0.089 5.911 5 C -0.015 4.015 6 C -0.087 4.087 7 C -0.195 4.195 8 C 0.009 3.991 9 C -0.122 4.122 10 C -0.157 4.157 11 C 0.527 3.473 12 O -0.578 6.578 13 N -0.578 5.578 14 C 0.112 3.888 15 C -0.175 4.175 16 C 0.159 3.841 17 N -0.603 5.603 18 C -0.344 4.344 19 H 0.049 0.951 20 C -0.072 4.072 21 N -0.945 5.945 22 Si 1.097 2.903 23 H -0.296 1.296 24 H -0.289 1.289 25 H -0.271 1.271 26 C 0.153 3.847 27 C 0.108 3.892 28 H 0.095 0.905 29 H 0.085 0.915 30 H 0.101 0.899 31 H 0.101 0.899 32 H 0.103 0.897 33 H 0.079 0.921 34 H 0.053 0.947 35 H 0.086 0.914 36 H 0.057 0.943 37 H 0.091 0.909 38 H 0.098 0.902 39 H 0.042 0.958 40 H 0.080 0.920 41 H 0.097 0.903 42 H 0.090 0.910 43 H 0.071 0.929 44 H 0.035 0.965 45 H 0.045 0.955 46 H 0.255 0.745 47 H 0.015 0.985 48 H 0.020 0.980 49 H 0.087 0.913 50 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.003 18.153 -8.470 20.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.119 4.119 3 N -0.093 5.093 4 O 0.028 5.972 5 C -0.079 4.079 6 C -0.144 4.144 7 C -0.199 4.199 8 C 0.005 3.995 9 C -0.180 4.180 10 C -0.214 4.214 11 C 0.316 3.684 12 O -0.458 6.458 13 N -0.308 5.308 14 C -0.009 4.009 15 C -0.215 4.215 16 C 0.032 3.968 17 N -0.326 5.326 18 C -0.474 4.474 19 H 0.067 0.933 20 C -0.269 4.269 21 N -0.587 5.587 22 Si 0.923 3.077 23 H -0.223 1.223 24 H -0.216 1.216 25 H -0.196 1.196 26 C 0.027 3.973 27 C -0.018 4.018 28 H 0.114 0.886 29 H 0.104 0.896 30 H 0.119 0.881 31 H 0.119 0.881 32 H 0.122 0.878 33 H 0.097 0.903 34 H 0.072 0.928 35 H 0.105 0.895 36 H 0.076 0.924 37 H 0.109 0.891 38 H 0.117 0.883 39 H 0.061 0.939 40 H 0.099 0.901 41 H 0.115 0.885 42 H 0.108 0.892 43 H 0.090 0.910 44 H 0.054 0.946 45 H 0.063 0.937 46 H 0.065 0.935 47 H 0.033 0.967 48 H 0.039 0.961 49 H 0.106 0.894 50 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -0.044 17.508 -9.191 19.773 hybrid contribution 0.367 0.038 0.903 0.976 sum 0.323 17.546 -8.287 19.407 Atomic orbital electron populations 1.20668 0.83987 1.05059 1.04884 1.23719 1.00004 0.87139 1.01039 1.73847 0.89457 1.24323 1.21672 1.84790 1.21700 1.22352 1.68376 1.24458 0.98633 0.83599 1.01192 1.20634 0.90126 0.98373 1.05237 1.20434 0.92394 0.95359 1.11753 1.18954 0.95758 0.88104 0.96706 1.21671 1.02886 1.00929 0.92464 1.22656 0.93199 1.02546 1.02967 1.20669 0.82415 0.82643 0.82680 1.90659 1.45685 1.36026 1.73453 1.47373 1.45435 1.31417 1.06562 1.21209 0.93434 0.87694 0.98542 1.21970 0.98666 1.00338 1.00559 1.20321 0.97942 0.85432 0.93077 1.43816 1.02822 1.16693 1.69277 1.20021 0.91042 0.89457 1.46916 0.93281 1.26816 1.02171 0.97101 1.00780 1.70899 1.23329 1.38025 1.26481 0.83091 0.74749 0.74464 0.75374 1.22252 1.21589 1.19636 1.21761 0.85329 0.94799 0.95427 1.21511 0.92898 0.92784 0.94579 0.88628 0.89641 0.88107 0.88066 0.87805 0.90295 0.92826 0.89537 0.92392 0.89059 0.88322 0.93911 0.90148 0.88521 0.89185 0.91037 0.94642 0.93696 0.93469 0.96670 0.96114 0.89443 0.91069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.32 8.75 71.23 0.62 -0.70 16 2 C 0.04 0.86 6.47 43.58 0.28 1.14 16 3 N -0.38 -9.31 12.07 -49.55 -0.60 -9.91 16 4 O 0.09 2.12 11.20 71.69 0.80 2.92 16 5 C -0.02 -0.35 7.37 25.04 0.18 -0.17 16 6 C -0.09 -1.79 10.15 71.24 0.72 -1.06 16 7 C -0.20 -4.55 2.64 -19.73 -0.05 -4.60 16 8 C 0.01 0.23 0.70 -53.67 -0.04 0.19 16 9 C -0.12 -3.14 7.76 71.98 0.56 -2.58 16 10 C -0.16 -3.96 5.45 71.98 0.39 -3.57 16 11 C 0.53 18.01 3.74 87.66 0.33 18.34 16 12 O -0.58 -23.96 14.58 -3.02 -0.04 -24.01 16 13 N -0.58 -18.77 2.37 -831.21 -1.97 -20.74 16 14 C 0.11 2.96 4.81 84.23 0.41 3.37 16 15 C -0.18 -5.09 4.78 28.85 0.14 -4.95 16 16 C 0.16 5.92 5.59 87.02 0.49 6.40 16 17 N -0.60 -28.27 2.39 -699.18 -1.67 -29.94 16 18 C -0.34 -18.54 9.11 84.04 0.77 -17.78 16 19 H 0.05 2.64 7.95 -2.91 -0.02 2.62 16 20 C -0.07 -4.08 4.61 84.86 0.39 -3.69 16 21 N -0.94 -58.01 12.66 21.65 0.27 -57.74 16 22 Si 1.10 52.15 29.99 68.60 2.06 54.21 16 23 H -0.30 -14.52 7.11 99.48 0.71 -13.81 16 24 H -0.29 -13.35 7.11 99.48 0.71 -12.65 16 25 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 26 C 0.15 7.17 5.07 86.56 0.44 7.61 16 27 C 0.11 3.87 5.29 87.55 0.46 4.34 16 28 H 0.10 1.23 7.76 -2.39 -0.02 1.21 16 29 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 30 H 0.10 1.28 5.64 -2.39 -0.01 1.26 16 31 H 0.10 1.83 8.14 -2.39 -0.02 1.81 16 32 H 0.10 1.66 8.14 -2.39 -0.02 1.64 16 33 H 0.08 2.08 4.51 -2.38 -0.01 2.07 16 34 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 35 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 36 H 0.06 1.55 7.91 -2.39 -0.02 1.53 16 37 H 0.09 2.11 2.84 -2.39 -0.01 2.10 16 38 H 0.10 1.84 5.78 -2.39 -0.01 1.82 16 39 H 0.04 1.42 7.62 -2.39 -0.02 1.40 16 40 H 0.08 1.87 8.06 -2.38 -0.02 1.85 16 41 H 0.10 2.31 2.90 -2.39 -0.01 2.31 16 42 H 0.09 2.05 8.14 -2.38 -0.02 2.03 16 43 H 0.07 2.36 4.77 -2.38 -0.01 2.35 16 44 H 0.04 1.39 8.02 -2.39 -0.02 1.37 16 45 H 0.04 1.53 7.58 -2.39 -0.02 1.51 16 46 H 0.26 15.79 6.37 -92.71 -0.59 15.20 16 47 H 0.02 0.76 7.10 -2.39 -0.02 0.74 16 48 H 0.02 1.15 7.04 -2.38 -0.02 1.13 16 49 H 0.09 2.64 7.73 -2.39 -0.02 2.62 16 50 H 0.07 2.62 7.30 -2.39 -0.02 2.60 16 Total: -1.00 -71.02 364.60 6.09 -64.93 By element: Atomic # 1 Polarization: 16.85 SS G_CDS: 1.15 Total: 18.00 kcal Atomic # 6 Polarization: -3.81 SS G_CDS: 6.09 Total: 2.28 kcal Atomic # 7 Polarization: -114.37 SS G_CDS: -3.96 Total: -118.33 kcal Atomic # 8 Polarization: -21.84 SS G_CDS: 0.76 Total: -21.08 kcal Atomic # 14 Polarization: 52.15 SS G_CDS: 2.06 Total: 54.21 kcal Total: -71.02 6.09 -64.93 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981804607.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.218 kcal (2) G-P(sol) polarization free energy of solvation -71.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.926 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds