Wall clock time and date at job start Tue Mar 31 2020 19:01:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52995 * 110.26415 * 2 1 4 4 C 1.54319 * 110.29278 * 122.05971 * 2 1 3 5 5 N 1.48369 * 104.55977 * 144.28217 * 4 2 1 6 6 C 1.46904 * 110.99483 * 200.74411 * 5 4 2 7 7 C 1.50699 * 109.47413 * 293.10466 * 6 5 4 8 8 O 1.21285 * 119.99890 * 0.96105 * 7 6 5 9 9 N 1.34768 * 119.99809 * 180.95433 * 7 6 5 10 10 C 1.46506 * 119.99763 * 180.02562 * 9 7 6 11 11 C 1.50704 * 109.46818 * 90.00729 * 10 9 7 12 12 H 1.08003 * 119.99843 * 359.97438 * 11 10 9 13 13 C 1.37879 * 120.00038 * 180.02562 * 11 10 9 14 14 N 1.31513 * 119.99913 * 179.97438 * 13 11 10 15 15 Si 1.86798 * 119.99748 * 359.97438 * 13 11 10 16 16 H 1.48500 * 109.46930 * 90.00622 * 15 13 11 17 17 H 1.48499 * 109.47041 * 210.00113 * 15 13 11 18 18 H 1.48495 * 109.47343 * 330.00541 * 15 13 11 19 19 C 1.46500 * 120.00640 * 0.02562 * 9 7 6 20 20 C 1.52994 * 109.47080 * 89.99366 * 19 9 7 21 21 C 1.47207 * 109.47229 * 180.02562 * 20 19 9 22 22 N 8.90239 * 119.12642 * 160.60521 * 2 1 3 23 23 C 1.48438 * 104.86709 * 320.68413 * 5 4 2 24 24 H 1.09005 * 113.38954 * 273.87513 * 23 5 4 25 25 C 1.54139 * 108.30659 * 147.81046 * 23 5 4 26 26 O 1.43689 * 107.43646 * 246.51159 * 25 23 5 27 27 C 1.45352 * 107.46903 * 26.42323 * 26 25 23 28 28 C 1.53863 * 110.29548 * 237.83183 * 2 1 3 29 29 H 1.08994 * 112.83344 * 2.12164 * 28 2 1 30 30 H 1.09002 * 109.46815 * 299.39339 * 1 2 3 31 31 H 1.09003 * 109.46861 * 59.39360 * 1 2 3 32 32 H 1.09005 * 109.47248 * 179.39161 * 1 2 3 33 33 H 1.09005 * 109.47025 * 169.93560 * 3 2 1 34 34 H 1.08997 * 109.47134 * 289.93615 * 3 2 1 35 35 H 1.09000 * 109.46902 * 49.94099 * 3 2 1 36 36 H 1.08995 * 110.41514 * 263.05056 * 4 2 1 37 37 H 1.08999 * 110.41696 * 25.51513 * 4 2 1 38 38 H 1.09000 * 109.46920 * 53.11294 * 6 5 4 39 39 H 1.09003 * 109.46810 * 173.10762 * 6 5 4 40 40 H 1.09002 * 109.47057 * 210.00076 * 10 9 7 41 41 H 1.08999 * 109.47508 * 330.00484 * 10 9 7 42 42 H 0.96999 * 119.99475 * 179.97438 * 14 13 11 43 43 H 1.08998 * 109.47545 * 210.00016 * 19 9 7 44 44 H 1.09004 * 109.46658 * 329.99441 * 19 9 7 45 45 H 1.09005 * 109.47561 * 300.00284 * 20 19 9 46 46 H 1.09004 * 109.47313 * 60.00477 * 20 19 9 47 47 H 1.08990 * 109.85365 * 5.97532 * 25 23 5 48 48 H 1.08997 * 109.85410 * 127.04774 * 25 23 5 49 49 H 1.08999 * 111.29223 * 202.17624 * 27 26 25 50 50 H 1.08994 * 110.34126 * 78.93730 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0600 1.4353 0.0000 4 6 2.0653 -0.7683 1.2267 5 7 3.2882 -1.4498 0.7355 6 6 3.6410 -2.5848 1.5989 7 6 4.0568 -2.0745 2.9545 8 8 4.0423 -0.8839 3.1849 9 7 4.4446 -2.9413 3.9108 10 6 4.8483 -2.4453 5.2290 11 6 3.6432 -2.3793 6.1315 12 1 2.6735 -2.6767 5.7602 13 6 3.7783 -1.9384 7.4308 14 7 2.7265 -1.8803 8.2183 15 14 5.4552 -1.4233 8.0727 16 1 5.6571 0.0264 7.8224 17 1 5.5296 -1.6887 9.5319 18 1 6.5120 -2.1981 7.3741 19 6 4.4625 -4.3795 3.6325 20 6 5.8326 -4.7746 3.0781 21 6 5.8505 -6.2196 2.7978 22 7 5.8632 -7.3354 2.5824 23 6 2.9443 -1.9095 -0.6334 24 1 2.4505 -2.8811 -0.6524 25 6 4.2234 -1.8712 -1.4926 26 8 4.0385 -0.8587 -2.4953 27 6 3.0949 0.1121 -1.9662 28 6 2.0638 -0.7683 -1.2216 29 1 1.2689 -1.1334 -1.8719 30 1 -0.3633 0.5044 0.8954 31 1 -0.3633 0.5232 -0.8845 32 1 -0.3634 -1.0276 -0.0109 33 1 3.1351 1.4256 0.1796 34 1 1.8571 1.8975 -0.9661 35 1 1.5653 2.0051 0.7866 36 1 2.3131 -0.0755 2.0308 37 1 1.3325 -1.5002 1.5663 38 1 2.7777 -3.2414 1.7068 39 1 4.4655 -3.1395 1.1509 40 1 5.5884 -3.1196 5.6599 41 1 5.2800 -1.4498 5.1260 42 1 2.8217 -1.5704 9.1325 43 1 4.2705 -4.9303 4.5533 44 1 3.6916 -4.6173 2.8995 45 1 6.0246 -4.2239 2.1572 46 1 6.6036 -4.5368 3.8111 47 1 5.0813 -1.6217 -0.8684 48 1 4.3787 -2.8394 -1.9685 49 1 2.6129 0.6727 -2.7671 50 1 3.5952 0.7871 -1.2718 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000452103836.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:01:37 Heat of formation + Delta-G solvation = -29.946880 kcal Electronic energy + Delta-G solvation = -30527.815994 eV Core-core repulsion = 26555.896760 eV Total energy + Delta-G solvation = -3971.919234 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.00550 -39.29305 -37.08203 -36.78769 -35.38957 -34.66266 -32.82950 -31.06916 -30.44654 -29.09345 -28.50069 -27.35609 -27.04265 -24.36853 -24.00072 -22.71223 -22.09722 -20.60262 -19.11246 -18.57846 -17.80048 -16.89595 -16.83234 -16.73637 -16.08908 -15.67904 -15.20504 -14.97176 -14.77369 -14.49051 -14.29928 -14.10180 -13.84644 -13.70705 -13.57287 -13.40711 -13.22768 -12.76605 -12.62157 -12.53696 -12.46222 -12.20567 -11.99426 -11.92736 -11.72126 -11.67043 -11.62206 -11.46742 -11.11095 -11.02072 -10.84035 -10.69950 -10.67320 -10.58878 -10.40369 -10.24085 -9.63081 -9.61974 -9.15749 -8.65580 -8.48631 -7.93719 -6.15379 -4.15070 2.63599 2.72422 3.18758 3.23915 3.28894 3.31628 3.38340 3.78071 3.85139 4.05648 4.21726 4.33365 4.45290 4.64590 4.84287 4.90125 4.94065 4.95899 4.99110 5.03145 5.11892 5.18318 5.19056 5.24474 5.28558 5.40991 5.42797 5.51246 5.55299 5.60887 5.67429 5.68608 5.69853 5.76625 5.84661 5.87649 5.96784 5.98440 6.10320 6.26455 6.35162 6.53538 6.65350 6.79319 6.87713 6.91902 7.17354 7.48723 7.52551 8.05247 8.38365 8.82205 8.88647 9.44396 10.97849 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.010061 B = 0.003910 C = 0.003098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2782.412332 B = 7158.782777 C = 9036.103173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.062 4.062 3 C -0.139 4.139 4 C 0.043 3.957 5 N -0.481 5.481 6 C 0.021 3.979 7 C 0.513 3.487 8 O -0.513 6.513 9 N -0.594 5.594 10 C 0.216 3.784 11 C -0.531 4.531 12 H 0.074 0.926 13 C 0.074 3.926 14 N -0.896 5.896 15 Si 0.875 3.125 16 H -0.273 1.273 17 H -0.286 1.286 18 H -0.265 1.265 19 C 0.117 3.883 20 C -0.051 4.051 21 C 0.215 3.785 22 N -0.442 5.442 23 C 0.026 3.974 24 H 0.077 0.923 25 C 0.062 3.938 26 O -0.386 6.386 27 C 0.050 3.950 28 C -0.115 4.115 29 H 0.094 0.906 30 H 0.060 0.940 31 H 0.056 0.944 32 H 0.053 0.947 33 H 0.071 0.929 34 H 0.054 0.946 35 H 0.057 0.943 36 H 0.107 0.893 37 H 0.043 0.957 38 H 0.063 0.937 39 H 0.098 0.902 40 H 0.032 0.968 41 H 0.040 0.960 42 H 0.265 0.735 43 H 0.097 0.903 44 H 0.076 0.924 45 H 0.107 0.893 46 H 0.116 0.884 47 H 0.073 0.927 48 H 0.078 0.922 49 H 0.087 0.913 50 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.066 0.761 -18.828 18.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.063 4.063 3 C -0.196 4.196 4 C -0.084 4.084 5 N -0.205 5.205 6 C -0.111 4.111 7 C 0.299 3.701 8 O -0.388 6.388 9 N -0.326 5.326 10 C 0.096 3.904 11 C -0.570 4.570 12 H 0.092 0.908 13 C -0.129 4.129 14 N -0.534 5.534 15 Si 0.702 3.298 16 H -0.199 1.199 17 H -0.211 1.211 18 H -0.190 1.190 19 C -0.009 4.009 20 C -0.092 4.092 21 C -0.103 4.103 22 N -0.119 5.119 23 C -0.083 4.083 24 H 0.095 0.905 25 C -0.015 4.015 26 O -0.305 6.305 27 C -0.025 4.025 28 C -0.134 4.134 29 H 0.112 0.888 30 H 0.080 0.920 31 H 0.075 0.925 32 H 0.072 0.928 33 H 0.090 0.910 34 H 0.073 0.927 35 H 0.076 0.924 36 H 0.125 0.875 37 H 0.061 0.939 38 H 0.081 0.919 39 H 0.116 0.884 40 H 0.049 0.951 41 H 0.058 0.942 42 H 0.075 0.925 43 H 0.115 0.885 44 H 0.094 0.906 45 H 0.125 0.875 46 H 0.134 0.866 47 H 0.091 0.909 48 H 0.096 0.904 49 H 0.105 0.895 50 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 0.597 0.171 -19.005 19.015 hybrid contribution -0.097 -0.147 0.961 0.977 sum 0.501 0.023 -18.044 18.051 Atomic orbital electron populations 1.21894 0.93964 1.01733 1.02103 1.21195 0.95312 0.95986 0.93766 1.21988 1.02077 0.94248 1.01322 1.23384 0.89478 0.98027 0.97532 1.65213 1.33223 1.21962 1.00124 1.22335 1.01760 0.93585 0.93414 1.20090 0.78261 0.86763 0.85033 1.90674 1.51754 1.15519 1.80811 1.47875 1.66028 1.04648 1.14094 1.19709 0.96460 0.95560 0.78671 1.21290 0.95016 1.44984 0.95664 0.90789 1.24850 0.96594 0.94790 0.96660 1.69891 1.29257 1.46881 1.07382 0.86872 0.84718 0.79884 0.78325 1.19886 1.21139 1.18976 1.21321 0.93616 0.83481 1.02478 1.19904 1.02383 0.82509 1.04442 1.29083 0.93196 0.95028 0.92990 1.81239 1.08588 1.12719 1.09391 1.24071 0.95720 0.97774 0.90727 0.90498 1.23118 0.96959 0.91762 0.89657 1.88921 1.64838 1.36835 1.39932 1.24099 0.89012 0.91842 0.97588 1.23410 0.97831 0.95226 0.96954 0.88752 0.92044 0.92478 0.92757 0.91021 0.92745 0.92358 0.87502 0.93902 0.91881 0.88368 0.95052 0.94219 0.92509 0.88508 0.90557 0.87472 0.86597 0.90926 0.90416 0.89526 0.89844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.27 8.29 37.16 0.31 -0.96 16 2 C -0.06 -0.64 1.00 -153.37 -0.15 -0.79 16 3 C -0.14 -1.41 7.07 37.16 0.26 -1.15 16 4 C 0.04 0.57 4.77 -2.32 -0.01 0.56 16 5 N -0.48 -6.04 4.48 -222.34 -1.00 -7.03 16 6 C 0.02 0.25 3.84 -4.97 -0.02 0.23 16 7 C 0.51 8.75 7.46 -10.99 -0.08 8.67 16 8 O -0.51 -11.00 14.14 5.55 0.08 -10.92 16 9 N -0.59 -10.04 2.46 -175.06 -0.43 -10.47 16 10 C 0.22 4.63 4.23 -5.19 -0.02 4.61 16 11 C -0.53 -14.04 9.94 -34.44 -0.34 -14.38 16 12 H 0.07 2.16 8.06 -52.48 -0.42 1.74 16 13 C 0.07 2.03 5.47 -17.82 -0.10 1.93 16 14 N -0.90 -26.49 13.96 55.43 0.77 -25.71 16 15 Si 0.88 20.37 27.47 -169.99 -4.67 15.70 16 16 H -0.27 -6.45 7.11 56.52 0.40 -6.04 16 17 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 18 H -0.27 -5.68 6.54 56.52 0.37 -5.31 16 19 C 0.12 1.44 5.15 -4.05 -0.02 1.41 16 20 C -0.05 -0.47 6.02 -29.52 -0.18 -0.65 16 21 C 0.22 2.40 15.44 -20.74 -0.32 2.08 16 22 N -0.44 -6.17 18.54 42.17 0.78 -5.39 16 23 C 0.03 0.27 3.35 -64.84 -0.22 0.05 16 24 H 0.08 0.70 8.02 -51.93 -0.42 0.29 16 25 C 0.06 0.65 7.46 37.75 0.28 0.93 16 26 O -0.39 -4.63 11.53 -35.23 -0.41 -5.03 16 27 C 0.05 0.51 5.94 38.05 0.23 0.73 16 28 C -0.12 -1.11 3.70 -87.86 -0.32 -1.44 16 29 H 0.09 0.82 7.84 -51.93 -0.41 0.41 16 30 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 31 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.07 0.83 6.65 -51.93 -0.35 0.49 16 34 H 0.05 0.45 7.26 -51.93 -0.38 0.08 16 35 H 0.06 0.60 8.13 -51.93 -0.42 0.18 16 36 H 0.11 1.78 6.41 -51.93 -0.33 1.44 16 37 H 0.04 0.58 7.60 -51.93 -0.39 0.18 16 38 H 0.06 0.71 7.26 -51.93 -0.38 0.33 16 39 H 0.10 0.93 7.13 -51.93 -0.37 0.56 16 40 H 0.03 0.63 7.13 -51.93 -0.37 0.26 16 41 H 0.04 0.92 6.85 -51.93 -0.36 0.57 16 42 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 43 H 0.10 1.29 8.07 -51.93 -0.42 0.87 16 44 H 0.08 0.78 6.47 -51.93 -0.34 0.44 16 45 H 0.11 0.77 7.20 -51.93 -0.37 0.40 16 46 H 0.12 1.03 8.14 -51.93 -0.42 0.60 16 47 H 0.07 0.81 7.86 -51.93 -0.41 0.41 16 48 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 49 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 50 H 0.08 0.90 5.20 -51.93 -0.27 0.63 16 LS Contribution 392.75 15.07 5.92 5.92 Total: -1.00 -33.23 392.75 -7.76 -40.99 By element: Atomic # 1 Polarization: 8.22 SS G_CDS: -8.10 Total: 0.12 kcal Atomic # 6 Polarization: 2.56 SS G_CDS: -0.71 Total: 1.85 kcal Atomic # 7 Polarization: -48.74 SS G_CDS: 0.13 Total: -48.61 kcal Atomic # 8 Polarization: -15.63 SS G_CDS: -0.33 Total: -15.96 kcal Atomic # 14 Polarization: 20.37 SS G_CDS: -4.67 Total: 15.70 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -33.23 -7.76 -40.99 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000452103836.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.044 kcal (2) G-P(sol) polarization free energy of solvation -33.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.991 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds