Wall clock time and date at job start Tue Mar 31 2020 19:01:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52995 * 110.26415 * 2 1 4 4 C 1.54319 * 110.29278 * 122.05971 * 2 1 3 5 5 N 1.48369 * 104.55977 * 144.28217 * 4 2 1 6 6 C 1.46904 * 110.99483 * 200.74411 * 5 4 2 7 7 C 1.50699 * 109.47413 * 293.10466 * 6 5 4 8 8 O 1.21285 * 119.99890 * 0.96105 * 7 6 5 9 9 N 1.34768 * 119.99809 * 180.95433 * 7 6 5 10 10 C 1.46506 * 119.99763 * 180.02562 * 9 7 6 11 11 C 1.50704 * 109.46818 * 90.00729 * 10 9 7 12 12 H 1.08003 * 119.99843 * 359.97438 * 11 10 9 13 13 C 1.37879 * 120.00038 * 180.02562 * 11 10 9 14 14 N 1.31513 * 119.99913 * 179.97438 * 13 11 10 15 15 Si 1.86798 * 119.99748 * 359.97438 * 13 11 10 16 16 H 1.48500 * 109.46930 * 90.00622 * 15 13 11 17 17 H 1.48499 * 109.47041 * 210.00113 * 15 13 11 18 18 H 1.48495 * 109.47343 * 330.00541 * 15 13 11 19 19 C 1.46500 * 120.00640 * 0.02562 * 9 7 6 20 20 C 1.52994 * 109.47080 * 89.99366 * 19 9 7 21 21 C 1.47207 * 109.47229 * 180.02562 * 20 19 9 22 22 N 8.90239 * 119.12642 * 160.60521 * 2 1 3 23 23 C 1.48438 * 104.86709 * 320.68413 * 5 4 2 24 24 H 1.09005 * 113.38954 * 273.87513 * 23 5 4 25 25 C 1.54139 * 108.30659 * 147.81046 * 23 5 4 26 26 O 1.43689 * 107.43646 * 246.51159 * 25 23 5 27 27 C 1.45352 * 107.46903 * 26.42323 * 26 25 23 28 28 C 1.53863 * 110.29548 * 237.83183 * 2 1 3 29 29 H 1.08994 * 112.83344 * 2.12164 * 28 2 1 30 30 H 1.09002 * 109.46815 * 299.39339 * 1 2 3 31 31 H 1.09003 * 109.46861 * 59.39360 * 1 2 3 32 32 H 1.09005 * 109.47248 * 179.39161 * 1 2 3 33 33 H 1.09005 * 109.47025 * 169.93560 * 3 2 1 34 34 H 1.08997 * 109.47134 * 289.93615 * 3 2 1 35 35 H 1.09000 * 109.46902 * 49.94099 * 3 2 1 36 36 H 1.08995 * 110.41514 * 263.05056 * 4 2 1 37 37 H 1.08999 * 110.41696 * 25.51513 * 4 2 1 38 38 H 1.09000 * 109.46920 * 53.11294 * 6 5 4 39 39 H 1.09003 * 109.46810 * 173.10762 * 6 5 4 40 40 H 1.09002 * 109.47057 * 210.00076 * 10 9 7 41 41 H 1.08999 * 109.47508 * 330.00484 * 10 9 7 42 42 H 0.96999 * 119.99475 * 179.97438 * 14 13 11 43 43 H 1.08998 * 109.47545 * 210.00016 * 19 9 7 44 44 H 1.09004 * 109.46658 * 329.99441 * 19 9 7 45 45 H 1.09005 * 109.47561 * 300.00284 * 20 19 9 46 46 H 1.09004 * 109.47313 * 60.00477 * 20 19 9 47 47 H 1.08990 * 109.85365 * 5.97532 * 25 23 5 48 48 H 1.08997 * 109.85410 * 127.04774 * 25 23 5 49 49 H 1.08999 * 111.29223 * 202.17624 * 27 26 25 50 50 H 1.08994 * 110.34126 * 78.93730 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0600 1.4353 0.0000 4 6 2.0653 -0.7683 1.2267 5 7 3.2882 -1.4498 0.7355 6 6 3.6410 -2.5848 1.5989 7 6 4.0568 -2.0745 2.9545 8 8 4.0423 -0.8839 3.1849 9 7 4.4446 -2.9413 3.9108 10 6 4.8483 -2.4453 5.2290 11 6 3.6432 -2.3793 6.1315 12 1 2.6735 -2.6767 5.7602 13 6 3.7783 -1.9384 7.4308 14 7 2.7265 -1.8803 8.2183 15 14 5.4552 -1.4233 8.0727 16 1 5.6571 0.0264 7.8224 17 1 5.5296 -1.6887 9.5319 18 1 6.5120 -2.1981 7.3741 19 6 4.4625 -4.3795 3.6325 20 6 5.8326 -4.7746 3.0781 21 6 5.8505 -6.2196 2.7978 22 7 5.8632 -7.3354 2.5824 23 6 2.9443 -1.9095 -0.6334 24 1 2.4505 -2.8811 -0.6524 25 6 4.2234 -1.8712 -1.4926 26 8 4.0385 -0.8587 -2.4953 27 6 3.0949 0.1121 -1.9662 28 6 2.0638 -0.7683 -1.2216 29 1 1.2689 -1.1334 -1.8719 30 1 -0.3633 0.5044 0.8954 31 1 -0.3633 0.5232 -0.8845 32 1 -0.3634 -1.0276 -0.0109 33 1 3.1351 1.4256 0.1796 34 1 1.8571 1.8975 -0.9661 35 1 1.5653 2.0051 0.7866 36 1 2.3131 -0.0755 2.0308 37 1 1.3325 -1.5002 1.5663 38 1 2.7777 -3.2414 1.7068 39 1 4.4655 -3.1395 1.1509 40 1 5.5884 -3.1196 5.6599 41 1 5.2800 -1.4498 5.1260 42 1 2.8217 -1.5704 9.1325 43 1 4.2705 -4.9303 4.5533 44 1 3.6916 -4.6173 2.8995 45 1 6.0246 -4.2239 2.1572 46 1 6.6036 -4.5368 3.8111 47 1 5.0813 -1.6217 -0.8684 48 1 4.3787 -2.8394 -1.9685 49 1 2.6129 0.6727 -2.7671 50 1 3.5952 0.7871 -1.2718 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000452103836.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:01:36 Heat of formation + Delta-G solvation = -53.280967 kcal Electronic energy + Delta-G solvation = -30528.827836 eV Core-core repulsion = 26555.896760 eV Total energy + Delta-G solvation = -3972.931076 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.42 seconds Orbital eigenvalues (eV) -41.89940 -40.56495 -38.05794 -37.72149 -36.67477 -35.64025 -34.76252 -32.35067 -31.34991 -30.30274 -29.49826 -28.36104 -28.11177 -25.45645 -25.21733 -23.66510 -23.50264 -21.47902 -20.02383 -19.81244 -19.16650 -18.48156 -17.88230 -17.72821 -17.02722 -16.95105 -16.33588 -16.00337 -15.81304 -15.70942 -15.44297 -15.17766 -14.93120 -14.64957 -14.57060 -14.45847 -14.37261 -14.22838 -13.75426 -13.61935 -13.54628 -13.37028 -13.14916 -13.05075 -12.76850 -12.65914 -12.58477 -12.51592 -12.39206 -12.30744 -11.96965 -11.90951 -11.76584 -11.68636 -11.53746 -11.48892 -11.25928 -10.77159 -10.51838 -10.43473 -9.48125 -9.40771 -8.28127 -6.32234 1.38240 1.42349 1.49353 1.69358 1.85782 1.88701 2.20206 2.36182 2.91684 3.01546 3.07800 3.17004 3.31827 3.61121 3.75313 3.90760 4.02757 4.09676 4.14222 4.14846 4.18195 4.26089 4.36034 4.41060 4.43764 4.59038 4.63305 4.66779 4.77272 4.78533 4.82505 4.87502 4.89611 4.94938 4.95065 5.00414 5.03584 5.06330 5.10999 5.19044 5.26460 5.36980 5.47324 5.53277 5.64901 5.76698 5.92730 6.06099 6.30130 6.62277 6.70465 6.73691 7.28958 7.51527 8.88762 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.010061 B = 0.003910 C = 0.003098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2782.412332 B = 7158.782777 C = 9036.103173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.057 4.057 3 C -0.136 4.136 4 C 0.045 3.955 5 N -0.495 5.495 6 C 0.029 3.971 7 C 0.505 3.495 8 O -0.567 6.567 9 N -0.597 5.597 10 C 0.224 3.776 11 C -0.530 4.530 12 H 0.028 0.972 13 C 0.010 3.990 14 N -0.950 5.950 15 Si 0.942 3.058 16 H -0.280 1.280 17 H -0.284 1.284 18 H -0.228 1.228 19 C 0.112 3.888 20 C -0.037 4.037 21 C 0.245 3.755 22 N -0.491 5.491 23 C 0.028 3.972 24 H 0.098 0.902 25 C 0.062 3.938 26 O -0.403 6.403 27 C 0.049 3.951 28 C -0.109 4.109 29 H 0.114 0.886 30 H 0.048 0.952 31 H 0.076 0.924 32 H 0.058 0.942 33 H 0.051 0.949 34 H 0.077 0.923 35 H 0.047 0.953 36 H 0.062 0.938 37 H 0.035 0.965 38 H 0.079 0.921 39 H 0.137 0.863 40 H 0.058 0.942 41 H 0.023 0.977 42 H 0.265 0.735 43 H 0.083 0.917 44 H 0.100 0.900 45 H 0.139 0.861 46 H 0.128 0.872 47 H 0.061 0.939 48 H 0.100 0.900 49 H 0.105 0.895 50 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.492 -0.347 -21.465 21.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.058 4.058 3 C -0.193 4.193 4 C -0.083 4.083 5 N -0.220 5.220 6 C -0.102 4.102 7 C 0.294 3.706 8 O -0.445 6.445 9 N -0.328 5.328 10 C 0.102 3.898 11 C -0.569 4.569 12 H 0.047 0.953 13 C -0.188 4.188 14 N -0.590 5.590 15 Si 0.766 3.234 16 H -0.206 1.206 17 H -0.210 1.210 18 H -0.150 1.150 19 C -0.012 4.012 20 C -0.078 4.078 21 C -0.072 4.072 22 N -0.169 5.169 23 C -0.080 4.080 24 H 0.116 0.884 25 C -0.015 4.015 26 O -0.323 6.323 27 C -0.027 4.027 28 C -0.128 4.128 29 H 0.132 0.868 30 H 0.067 0.933 31 H 0.095 0.905 32 H 0.077 0.923 33 H 0.070 0.930 34 H 0.095 0.905 35 H 0.066 0.934 36 H 0.081 0.919 37 H 0.054 0.946 38 H 0.097 0.903 39 H 0.154 0.846 40 H 0.076 0.924 41 H 0.041 0.959 42 H 0.074 0.926 43 H 0.101 0.899 44 H 0.119 0.881 45 H 0.157 0.843 46 H 0.146 0.854 47 H 0.080 0.920 48 H 0.118 0.882 49 H 0.123 0.877 50 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 2.037 -0.993 -21.685 21.803 hybrid contribution -0.636 0.230 1.776 1.900 sum 1.401 -0.763 -19.909 19.973 Atomic orbital electron populations 1.21872 0.92808 1.02205 1.02475 1.21155 0.96142 0.95584 0.92898 1.21947 1.00636 0.94514 1.02174 1.23219 0.89840 0.97494 0.97737 1.65147 1.33000 1.22546 1.01310 1.22346 1.03561 0.93657 0.90587 1.21002 0.76929 0.86083 0.86616 1.90661 1.53780 1.17973 1.82040 1.47836 1.65780 1.06734 1.12466 1.19366 0.94536 0.95673 0.80212 1.21606 0.95126 1.43644 0.96493 0.95322 1.25824 1.00853 0.94983 0.97112 1.70060 1.32079 1.48970 1.07903 0.85796 0.80488 0.79326 0.77839 1.20555 1.20987 1.15013 1.21517 0.96452 0.80358 1.02900 1.19861 1.00467 0.81381 1.06100 1.29201 0.91715 0.94892 0.91436 1.81287 1.10092 1.14222 1.11277 1.24164 0.96102 0.98829 0.88905 0.88406 1.23190 0.96410 0.92411 0.89477 1.88908 1.65342 1.37449 1.40588 1.24161 0.88842 0.91661 0.98025 1.23433 0.98084 0.94779 0.96460 0.86778 0.93253 0.90502 0.92262 0.92978 0.90457 0.93381 0.91910 0.94636 0.90321 0.84553 0.92378 0.95874 0.92583 0.89882 0.88141 0.84333 0.85443 0.92047 0.88155 0.87656 0.91172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.29 8.29 71.98 0.60 -1.69 16 2 C -0.06 -1.13 1.00 -51.44 -0.05 -1.19 16 3 C -0.14 -2.76 7.07 71.98 0.51 -2.25 16 4 C 0.04 1.22 4.77 86.47 0.41 1.63 16 5 N -0.50 -11.82 4.48 -857.36 -3.84 -15.66 16 6 C 0.03 0.66 3.84 85.56 0.33 0.98 16 7 C 0.51 17.04 7.46 87.66 0.65 17.69 16 8 O -0.57 -25.17 14.14 -3.05 -0.04 -25.21 16 9 N -0.60 -19.53 2.46 -826.15 -2.03 -21.56 16 10 C 0.22 9.49 4.23 85.63 0.36 9.85 16 11 C -0.53 -28.87 9.94 25.60 0.25 -28.62 16 12 H 0.03 1.76 8.06 -2.91 -0.02 1.74 16 13 C 0.01 0.55 5.47 84.66 0.46 1.02 16 14 N -0.95 -58.44 13.96 21.45 0.30 -58.14 16 15 Si 0.94 42.10 27.47 68.60 1.88 43.99 16 16 H -0.28 -12.72 7.11 99.48 0.71 -12.02 16 17 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 18 H -0.23 -8.71 6.54 99.48 0.65 -8.06 16 19 C 0.11 2.47 5.15 86.38 0.45 2.92 16 20 C -0.04 -0.54 6.02 28.79 0.17 -0.37 16 21 C 0.24 4.69 15.44 89.44 1.38 6.08 16 22 N -0.49 -12.66 18.54 20.01 0.37 -12.29 16 23 C 0.03 0.49 3.35 45.93 0.15 0.65 16 24 H 0.10 1.36 8.02 -2.38 -0.02 1.34 16 25 C 0.06 1.10 7.46 72.37 0.54 1.64 16 26 O -0.40 -8.65 11.53 -148.98 -1.72 -10.37 16 27 C 0.05 0.88 5.94 72.56 0.43 1.31 16 28 C -0.11 -1.82 3.70 -9.00 -0.03 -1.85 16 29 H 0.11 1.52 7.84 -2.39 -0.02 1.50 16 30 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 31 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 32 H 0.06 0.94 8.14 -2.38 -0.02 0.92 16 33 H 0.05 1.26 6.65 -2.38 -0.02 1.25 16 34 H 0.08 1.18 7.26 -2.39 -0.02 1.17 16 35 H 0.05 1.05 8.13 -2.39 -0.02 1.03 16 36 H 0.06 2.26 6.41 -2.39 -0.02 2.25 16 37 H 0.04 0.97 7.60 -2.39 -0.02 0.96 16 38 H 0.08 1.55 7.26 -2.39 -0.02 1.53 16 39 H 0.14 1.97 7.13 -2.39 -0.02 1.95 16 40 H 0.06 2.17 7.13 -2.39 -0.02 2.15 16 41 H 0.02 1.07 6.85 -2.39 -0.02 1.05 16 42 H 0.27 15.32 8.31 -92.71 -0.77 14.55 16 43 H 0.08 2.09 8.07 -2.39 -0.02 2.07 16 44 H 0.10 1.73 6.47 -2.38 -0.02 1.72 16 45 H 0.14 1.26 7.20 -2.38 -0.02 1.24 16 46 H 0.13 1.71 8.14 -2.38 -0.02 1.69 16 47 H 0.06 1.23 7.86 -2.39 -0.02 1.21 16 48 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 49 H 0.11 1.47 8.14 -2.39 -0.02 1.45 16 50 H 0.07 1.46 5.20 -2.39 -0.01 1.44 16 Total: -1.00 -78.38 392.75 2.43 -75.95 By element: Atomic # 1 Polarization: 14.63 SS G_CDS: 0.88 Total: 15.50 kcal Atomic # 6 Polarization: 1.17 SS G_CDS: 6.62 Total: 7.79 kcal Atomic # 7 Polarization: -102.46 SS G_CDS: -5.20 Total: -107.66 kcal Atomic # 8 Polarization: -33.82 SS G_CDS: -1.76 Total: -35.58 kcal Atomic # 14 Polarization: 42.10 SS G_CDS: 1.88 Total: 43.99 kcal Total: -78.38 2.43 -75.95 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000452103836.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.671 kcal (2) G-P(sol) polarization free energy of solvation -78.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.952 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.43 seconds