Wall clock time and date at job start Tue Mar 31 2020 20:02:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.33689 * 126.27467 * 2 1 4 4 C 1.30619 * 108.99979 * 180.02562 * 3 2 1 5 5 C 1.50691 * 125.42615 * 179.97438 * 4 3 2 6 6 C 1.52999 * 109.47282 * 90.02743 * 5 4 3 7 7 C 1.53001 * 109.47540 * 185.00084 * 6 5 4 8 8 C 1.53001 * 109.47285 * 64.99530 * 6 5 4 9 9 O 1.33675 * 109.15100 * 0.22995 * 4 3 2 10 10 C 1.35339 * 107.68276 * 359.63262 * 9 4 3 11 11 C 1.46729 * 126.64389 * 180.15730 * 10 9 4 12 12 O 1.21680 * 120.00036 * 180.23980 * 11 10 9 13 13 N 1.34776 * 119.99706 * 0.24452 * 11 10 9 14 14 C 1.46502 * 119.99820 * 180.02562 * 13 11 10 15 15 C 1.53042 * 109.45560 * 275.06071 * 14 13 11 16 16 C 1.53187 * 109.31024 * 178.61391 * 15 14 13 17 17 N 1.46931 * 108.77749 * 54.63456 * 16 15 14 18 18 C 1.36939 * 120.63066 * 126.40934 * 17 16 15 19 19 H 1.07999 * 119.99877 * 332.61158 * 18 17 16 20 20 C 1.38805 * 119.99723 * 152.61179 * 18 17 16 21 21 N 1.31628 * 119.99848 * 159.34944 * 20 18 17 22 22 Si 1.86796 * 120.00446 * 339.34547 * 20 18 17 23 23 H 1.48496 * 109.47141 * 92.94030 * 22 20 18 24 24 H 1.48497 * 109.47447 * 212.94481 * 22 20 18 25 25 H 1.48505 * 109.46788 * 332.94615 * 22 20 18 26 26 C 1.46922 * 118.73992 * 306.39380 * 17 16 15 27 27 C 1.53036 * 109.45874 * 154.99523 * 14 13 11 28 28 H 1.08993 * 109.46911 * 89.97439 * 1 2 3 29 29 H 1.08997 * 109.46914 * 209.97201 * 1 2 3 30 30 H 1.09003 * 109.46953 * 329.97337 * 1 2 3 31 31 H 1.08998 * 109.47568 * 330.02732 * 5 4 3 32 32 H 1.09001 * 109.47599 * 210.02530 * 5 4 3 33 33 H 1.09006 * 109.46857 * 305.00191 * 6 5 4 34 34 H 1.08998 * 109.46545 * 300.00138 * 7 6 5 35 35 H 1.09002 * 109.46792 * 59.99649 * 7 6 5 36 36 H 1.09000 * 109.46879 * 179.97438 * 7 6 5 37 37 H 1.09006 * 109.46634 * 60.00524 * 8 6 5 38 38 H 1.08996 * 109.47370 * 179.97438 * 8 6 5 39 39 H 1.08993 * 109.47501 * 300.00907 * 8 6 5 40 40 H 0.97000 * 120.00031 * 359.97438 * 13 11 10 41 41 H 1.09000 * 109.45668 * 35.01775 * 14 13 11 42 42 H 1.08997 * 109.49954 * 298.56842 * 15 14 13 43 43 H 1.09003 * 109.49572 * 58.66953 * 15 14 13 44 44 H 1.09007 * 109.58894 * 294.85169 * 16 15 14 45 45 H 1.09003 * 109.70822 * 174.49346 * 16 15 14 46 46 H 0.96994 * 120.00109 * 180.02562 * 21 20 18 47 47 H 1.09004 * 109.58725 * 293.82010 * 26 17 16 48 48 H 1.08994 * 109.70804 * 173.45964 * 26 17 16 49 49 H 1.08997 * 109.50042 * 301.33405 * 27 14 13 50 50 H 1.09004 * 109.50085 * 61.39852 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2980 1.0778 0.0000 4 6 3.5453 0.6899 -0.0006 5 6 4.7440 1.6031 -0.0013 6 6 5.1508 1.9118 1.4409 7 6 6.2876 2.9358 1.4422 8 6 5.6215 0.6264 2.1244 9 8 3.5890 -0.6461 -0.0060 10 6 2.3137 -1.0992 -0.0006 11 6 1.8827 -2.5018 -0.0005 12 8 0.6967 -2.7738 0.0003 13 7 2.8005 -3.4888 -0.0010 14 6 2.3701 -4.8891 -0.0014 15 6 2.0991 -5.3395 1.4359 16 6 1.6162 -6.7933 1.4287 17 7 2.6023 -7.6156 0.7144 18 6 3.1376 -8.7307 1.3020 19 1 3.2111 -8.7917 2.3778 20 6 3.5856 -9.7827 0.5150 21 7 4.4460 -10.6505 1.0040 22 14 2.9674 -9.9668 -1.2381 23 1 3.9022 -9.2824 -2.1670 24 1 2.8898 -11.4082 -1.5868 25 1 1.6188 -9.3561 -1.3541 26 6 3.0029 -7.2190 -0.6423 27 6 3.4702 -5.7604 -0.6119 28 1 -0.3633 0.0005 -1.0276 29 1 -0.3633 -0.8902 0.5134 30 1 -0.3633 0.8898 0.5143 31 1 4.4934 2.5313 -0.5147 32 1 5.5720 1.1154 -0.5158 33 1 4.2953 2.3180 1.9807 34 1 7.1430 2.5296 0.9024 35 1 5.9522 3.8516 0.9553 36 1 6.5771 3.1561 2.4697 37 1 6.4770 0.2203 1.5846 38 1 5.9118 0.8464 3.1517 39 1 4.8117 -0.1031 2.1235 40 1 3.7459 -3.2719 -0.0019 41 1 1.4587 -4.9887 -0.5910 42 1 3.0162 -5.2636 2.0200 43 1 1.3319 -4.7036 1.8778 44 1 0.6529 -6.8559 0.9224 45 1 1.5146 -7.1519 2.4530 46 1 4.7593 -11.3854 0.4539 47 1 2.1527 -7.3163 -1.3175 48 1 3.8174 -7.8565 -0.9862 49 1 3.6791 -5.4241 -1.6274 50 1 4.3747 -5.6801 -0.0088 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000616162266.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:02:18 Heat of formation + Delta-G solvation = -11.284395 kcal Electronic energy + Delta-G solvation = -29440.000140 eV Core-core repulsion = 25468.890172 eV Total energy + Delta-G solvation = -3971.109968 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -43.70911 -39.83834 -37.72995 -37.01174 -35.66310 -34.60096 -32.39707 -31.98054 -30.51356 -30.22436 -28.89596 -27.64136 -27.45183 -24.98273 -23.12976 -22.69685 -22.24085 -21.52526 -20.67033 -20.51432 -19.74159 -18.22361 -17.23714 -16.87925 -16.38267 -16.23596 -15.26216 -15.11408 -14.89702 -14.87158 -14.35171 -14.20246 -14.18438 -13.83895 -13.48263 -13.41058 -13.13593 -12.99456 -12.95910 -12.77490 -12.45132 -12.43932 -12.36505 -12.03718 -11.84399 -11.77420 -11.45957 -11.22064 -11.13415 -11.10755 -11.03039 -10.87342 -10.62130 -10.35389 -10.29707 -10.07985 -9.79514 -9.50834 -9.17099 -8.84260 -8.66543 -7.02974 -5.97720 -3.33966 0.60038 2.12114 2.14970 2.97888 3.06909 3.28729 3.47015 3.49879 3.55442 4.27376 4.33117 4.42371 4.50039 4.54782 4.64606 4.90949 4.93882 5.02448 5.07153 5.16266 5.21773 5.25500 5.27388 5.30744 5.34562 5.42097 5.47261 5.48621 5.59357 5.61266 5.66068 5.74006 5.76273 5.80787 5.87503 5.97089 5.98391 6.10268 6.12293 6.24783 6.32988 6.53351 6.56972 6.60664 6.62907 6.86586 7.24042 7.47007 7.92662 7.99465 8.30104 8.90490 9.68719 10.05854 11.18193 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.016759 B = 0.002556 C = 0.002359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1670.336317 B =10950.435598 C =11864.900070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.079 3.921 3 N -0.488 5.488 4 C 0.223 3.777 5 C -0.025 4.025 6 C -0.094 4.094 7 C -0.146 4.146 8 C -0.154 4.154 9 O -0.186 6.186 10 C -0.117 4.117 11 C 0.607 3.393 12 O -0.514 6.514 13 N -0.710 5.710 14 C 0.150 3.850 15 C -0.142 4.142 16 C 0.151 3.849 17 N -0.606 5.606 18 C -0.260 4.260 19 H 0.086 0.914 20 C 0.023 3.977 21 N -0.908 5.908 22 Si 0.881 3.119 23 H -0.289 1.289 24 H -0.303 1.303 25 H -0.270 1.270 26 C 0.130 3.870 27 C -0.141 4.141 28 H 0.081 0.919 29 H 0.096 0.904 30 H 0.075 0.925 31 H 0.109 0.891 32 H 0.097 0.903 33 H 0.079 0.921 34 H 0.059 0.941 35 H 0.059 0.941 36 H 0.061 0.939 37 H 0.061 0.939 38 H 0.061 0.939 39 H 0.054 0.946 40 H 0.402 0.598 41 H 0.087 0.913 42 H 0.064 0.936 43 H 0.060 0.940 44 H 0.026 0.974 45 H 0.067 0.933 46 H 0.263 0.737 47 H 0.028 0.972 48 H 0.078 0.922 49 H 0.060 0.940 50 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.215 27.460 -2.069 27.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.045 4.045 3 N -0.217 5.217 4 C 0.018 3.982 5 C -0.063 4.063 6 C -0.113 4.113 7 C -0.203 4.203 8 C -0.211 4.211 9 O -0.073 6.073 10 C -0.172 4.172 11 C 0.391 3.609 12 O -0.392 6.392 13 N -0.359 5.359 14 C 0.047 3.953 15 C -0.182 4.182 16 C 0.025 3.975 17 N -0.330 5.330 18 C -0.388 4.388 19 H 0.104 0.896 20 C -0.176 4.176 21 N -0.551 5.551 22 Si 0.712 3.288 23 H -0.216 1.216 24 H -0.231 1.231 25 H -0.194 1.194 26 C 0.003 3.997 27 C -0.181 4.181 28 H 0.100 0.900 29 H 0.115 0.885 30 H 0.094 0.906 31 H 0.128 0.872 32 H 0.116 0.884 33 H 0.098 0.902 34 H 0.078 0.922 35 H 0.078 0.922 36 H 0.080 0.920 37 H 0.080 0.920 38 H 0.080 0.920 39 H 0.073 0.927 40 H 0.236 0.764 41 H 0.105 0.895 42 H 0.083 0.917 43 H 0.079 0.921 44 H 0.044 0.956 45 H 0.086 0.914 46 H 0.073 0.927 47 H 0.046 0.954 48 H 0.096 0.904 49 H 0.079 0.921 50 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 0.328 27.635 -2.075 27.715 hybrid contribution 0.534 -0.761 -1.058 1.408 sum 0.862 26.874 -3.132 27.069 Atomic orbital electron populations 1.20391 0.85271 1.04394 1.03704 1.22067 0.98348 0.86385 0.97743 1.70334 1.00357 1.31130 1.19927 1.26449 0.95531 0.79377 0.96855 1.20396 0.90231 0.96158 0.99465 1.21162 0.99417 0.97013 0.93704 1.21816 0.97678 0.98286 1.02539 1.21932 1.01630 0.96645 1.00894 1.84462 1.29732 1.23688 1.69397 1.23056 0.81251 0.96476 1.16390 1.16336 0.85998 0.81209 0.77313 1.90858 1.15666 1.81745 1.50936 1.46226 1.09542 1.06770 1.73391 1.21120 0.98752 0.77394 0.98014 1.22400 1.01573 0.98886 0.95341 1.20897 0.91100 0.88342 0.97200 1.44408 1.46473 1.28306 1.13790 1.18925 1.34602 0.92144 0.93138 0.89606 1.25289 0.98375 0.96113 0.97830 1.69837 1.30776 1.17016 1.37445 0.86975 0.80058 0.75930 0.85875 1.21636 1.23071 1.19447 1.21308 0.98257 0.92273 0.87839 1.22362 0.98198 0.97603 0.99911 0.90044 0.88503 0.90563 0.87235 0.88421 0.90220 0.92171 0.92212 0.91951 0.92021 0.92026 0.92737 0.76411 0.89460 0.91708 0.92113 0.95573 0.91445 0.92740 0.95374 0.90407 0.92136 0.91015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.88 9.87 36.01 0.36 -0.52 16 2 C 0.08 1.01 7.16 -82.46 -0.59 0.42 16 3 N -0.49 -5.95 11.26 -7.07 -0.08 -6.03 16 4 C 0.22 2.31 6.73 -12.80 -0.09 2.23 16 5 C -0.02 -0.16 5.32 -27.89 -0.15 -0.30 16 6 C -0.09 -0.56 2.91 -90.62 -0.26 -0.82 16 7 C -0.15 -0.62 9.19 37.16 0.34 -0.28 16 8 C -0.15 -1.07 9.01 37.16 0.33 -0.73 16 9 O -0.19 -2.17 9.99 4.41 0.04 -2.12 16 10 C -0.12 -1.55 7.18 -36.83 -0.26 -1.81 16 11 C 0.61 8.84 7.75 -12.83 -0.10 8.74 16 12 O -0.51 -8.61 14.45 5.21 0.08 -8.53 16 13 N -0.71 -9.71 5.07 -55.06 -0.28 -9.99 16 14 C 0.15 2.39 2.42 -67.89 -0.16 2.22 16 15 C -0.14 -2.39 5.65 -26.61 -0.15 -2.54 16 16 C 0.15 2.98 6.52 -3.71 -0.02 2.96 16 17 N -0.61 -14.15 2.77 -172.32 -0.48 -14.62 16 18 C -0.26 -7.16 10.04 -15.06 -0.15 -7.31 16 19 H 0.09 2.52 8.06 -52.49 -0.42 2.10 16 20 C 0.02 0.65 5.23 -17.43 -0.09 0.56 16 21 N -0.91 -27.55 13.97 55.49 0.78 -26.78 16 22 Si 0.88 22.09 24.35 -169.99 -4.14 17.95 16 23 H -0.29 -6.92 6.62 56.52 0.37 -6.54 16 24 H -0.30 -7.75 7.11 56.52 0.40 -7.35 16 25 H -0.27 -6.66 6.63 56.52 0.38 -6.29 16 26 C 0.13 2.74 4.20 -3.71 -0.02 2.72 16 27 C -0.14 -2.35 5.55 -26.61 -0.15 -2.50 16 28 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.10 1.15 6.47 -51.93 -0.34 0.82 16 30 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.11 0.56 8.14 -51.93 -0.42 0.13 16 32 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 34 H 0.06 0.23 8.14 -51.93 -0.42 -0.20 16 35 H 0.06 0.22 8.14 -51.93 -0.42 -0.21 16 36 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 37 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 38 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 39 H 0.05 0.48 6.91 -51.93 -0.36 0.12 16 40 H 0.40 4.73 8.40 -40.82 -0.34 4.39 16 41 H 0.09 1.50 7.58 -51.93 -0.39 1.10 16 42 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 43 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 44 H 0.03 0.51 8.14 -51.92 -0.42 0.09 16 45 H 0.07 1.32 7.93 -51.93 -0.41 0.91 16 46 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 47 H 0.03 0.59 7.08 -51.93 -0.37 0.23 16 48 H 0.08 1.80 4.50 -51.93 -0.23 1.56 16 49 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 50 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 LS Contribution 394.29 15.07 5.94 5.94 Total: -1.00 -32.21 394.29 -7.70 -39.91 By element: Atomic # 1 Polarization: 9.63 SS G_CDS: -8.40 Total: 1.24 kcal Atomic # 6 Polarization: 4.20 SS G_CDS: -1.16 Total: 3.03 kcal Atomic # 7 Polarization: -57.36 SS G_CDS: -0.06 Total: -57.42 kcal Atomic # 8 Polarization: -10.77 SS G_CDS: 0.12 Total: -10.65 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -4.14 Total: 17.95 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -32.21 -7.70 -39.91 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000616162266.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.626 kcal (2) G-P(sol) polarization free energy of solvation -32.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.910 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds