Wall clock time and date at job start Tue Mar 31 2020 20:02:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.33689 * 126.27467 * 2 1 4 4 C 1.30619 * 108.99979 * 180.02562 * 3 2 1 5 5 C 1.50691 * 125.42615 * 179.97438 * 4 3 2 6 6 C 1.52999 * 109.47282 * 90.02743 * 5 4 3 7 7 C 1.53001 * 109.47540 * 185.00084 * 6 5 4 8 8 C 1.53001 * 109.47285 * 64.99530 * 6 5 4 9 9 O 1.33675 * 109.15100 * 0.22995 * 4 3 2 10 10 C 1.35339 * 107.68276 * 359.63262 * 9 4 3 11 11 C 1.46729 * 126.64389 * 180.15730 * 10 9 4 12 12 O 1.21680 * 120.00036 * 180.23980 * 11 10 9 13 13 N 1.34776 * 119.99706 * 0.24452 * 11 10 9 14 14 C 1.46502 * 119.99820 * 180.02562 * 13 11 10 15 15 C 1.53042 * 109.45560 * 275.06071 * 14 13 11 16 16 C 1.53187 * 109.31024 * 178.61391 * 15 14 13 17 17 N 1.46931 * 108.77749 * 54.63456 * 16 15 14 18 18 C 1.36939 * 120.63066 * 126.40934 * 17 16 15 19 19 H 1.07999 * 119.99877 * 332.61158 * 18 17 16 20 20 C 1.38805 * 119.99723 * 152.61179 * 18 17 16 21 21 N 1.31628 * 119.99848 * 159.34944 * 20 18 17 22 22 Si 1.86796 * 120.00446 * 339.34547 * 20 18 17 23 23 H 1.48496 * 109.47141 * 92.94030 * 22 20 18 24 24 H 1.48497 * 109.47447 * 212.94481 * 22 20 18 25 25 H 1.48505 * 109.46788 * 332.94615 * 22 20 18 26 26 C 1.46922 * 118.73992 * 306.39380 * 17 16 15 27 27 C 1.53036 * 109.45874 * 154.99523 * 14 13 11 28 28 H 1.08993 * 109.46911 * 89.97439 * 1 2 3 29 29 H 1.08997 * 109.46914 * 209.97201 * 1 2 3 30 30 H 1.09003 * 109.46953 * 329.97337 * 1 2 3 31 31 H 1.08998 * 109.47568 * 330.02732 * 5 4 3 32 32 H 1.09001 * 109.47599 * 210.02530 * 5 4 3 33 33 H 1.09006 * 109.46857 * 305.00191 * 6 5 4 34 34 H 1.08998 * 109.46545 * 300.00138 * 7 6 5 35 35 H 1.09002 * 109.46792 * 59.99649 * 7 6 5 36 36 H 1.09000 * 109.46879 * 179.97438 * 7 6 5 37 37 H 1.09006 * 109.46634 * 60.00524 * 8 6 5 38 38 H 1.08996 * 109.47370 * 179.97438 * 8 6 5 39 39 H 1.08993 * 109.47501 * 300.00907 * 8 6 5 40 40 H 0.97000 * 120.00031 * 359.97438 * 13 11 10 41 41 H 1.09000 * 109.45668 * 35.01775 * 14 13 11 42 42 H 1.08997 * 109.49954 * 298.56842 * 15 14 13 43 43 H 1.09003 * 109.49572 * 58.66953 * 15 14 13 44 44 H 1.09007 * 109.58894 * 294.85169 * 16 15 14 45 45 H 1.09003 * 109.70822 * 174.49346 * 16 15 14 46 46 H 0.96994 * 120.00109 * 180.02562 * 21 20 18 47 47 H 1.09004 * 109.58725 * 293.82010 * 26 17 16 48 48 H 1.08994 * 109.70804 * 173.45964 * 26 17 16 49 49 H 1.08997 * 109.50042 * 301.33405 * 27 14 13 50 50 H 1.09004 * 109.50085 * 61.39852 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2980 1.0778 0.0000 4 6 3.5453 0.6899 -0.0006 5 6 4.7440 1.6031 -0.0013 6 6 5.1508 1.9118 1.4409 7 6 6.2876 2.9358 1.4422 8 6 5.6215 0.6264 2.1244 9 8 3.5890 -0.6461 -0.0060 10 6 2.3137 -1.0992 -0.0006 11 6 1.8827 -2.5018 -0.0005 12 8 0.6967 -2.7738 0.0003 13 7 2.8005 -3.4888 -0.0010 14 6 2.3701 -4.8891 -0.0014 15 6 2.0991 -5.3395 1.4359 16 6 1.6162 -6.7933 1.4287 17 7 2.6023 -7.6156 0.7144 18 6 3.1376 -8.7307 1.3020 19 1 3.2111 -8.7917 2.3778 20 6 3.5856 -9.7827 0.5150 21 7 4.4460 -10.6505 1.0040 22 14 2.9674 -9.9668 -1.2381 23 1 3.9022 -9.2824 -2.1670 24 1 2.8898 -11.4082 -1.5868 25 1 1.6188 -9.3561 -1.3541 26 6 3.0029 -7.2190 -0.6423 27 6 3.4702 -5.7604 -0.6119 28 1 -0.3633 0.0005 -1.0276 29 1 -0.3633 -0.8902 0.5134 30 1 -0.3633 0.8898 0.5143 31 1 4.4934 2.5313 -0.5147 32 1 5.5720 1.1154 -0.5158 33 1 4.2953 2.3180 1.9807 34 1 7.1430 2.5296 0.9024 35 1 5.9522 3.8516 0.9553 36 1 6.5771 3.1561 2.4697 37 1 6.4770 0.2203 1.5846 38 1 5.9118 0.8464 3.1517 39 1 4.8117 -0.1031 2.1235 40 1 3.7459 -3.2719 -0.0019 41 1 1.4587 -4.9887 -0.5910 42 1 3.0162 -5.2636 2.0200 43 1 1.3319 -4.7036 1.8778 44 1 0.6529 -6.8559 0.9224 45 1 1.5146 -7.1519 2.4530 46 1 4.7593 -11.3854 0.4539 47 1 2.1527 -7.3163 -1.3175 48 1 3.8174 -7.8565 -0.9862 49 1 3.6791 -5.4241 -1.6274 50 1 4.3747 -5.6801 -0.0088 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000616162266.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:02:17 Heat of formation + Delta-G solvation = -34.076290 kcal Electronic energy + Delta-G solvation = -29440.988470 eV Core-core repulsion = 25468.890172 eV Total energy + Delta-G solvation = -3972.098298 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -44.59658 -41.05088 -39.22101 -37.52867 -36.66940 -35.98768 -34.13227 -32.99485 -32.03476 -31.84385 -29.59652 -28.50300 -28.02929 -26.67315 -24.65390 -23.94627 -23.26817 -22.73981 -21.69650 -21.24167 -21.07709 -19.45176 -18.64808 -18.12571 -17.65901 -17.15883 -16.91994 -16.04110 -15.93395 -15.86954 -15.63966 -15.41857 -15.37304 -14.93452 -14.75603 -14.53628 -14.33164 -14.29255 -14.17749 -13.83139 -13.63466 -13.49664 -13.21834 -13.12688 -12.84463 -12.62372 -12.59796 -12.43166 -12.31181 -12.06597 -12.03429 -11.94043 -11.84610 -11.83069 -11.64618 -11.59921 -11.43481 -11.24938 -10.72162 -10.32725 -9.86178 -8.98348 -8.16720 -5.49499 -0.34471 1.22368 1.25399 1.29438 1.43029 1.51541 1.90024 1.99769 2.41176 2.76938 3.04501 3.30690 3.54368 3.57796 3.72741 3.81404 3.90727 3.91993 4.05100 4.16529 4.27750 4.31277 4.34163 4.44793 4.52812 4.57771 4.62310 4.64399 4.66483 4.70340 4.79006 4.81594 4.85321 4.88960 4.90001 4.96313 4.98644 5.03924 5.07012 5.12702 5.19618 5.25836 5.31545 5.37805 5.38908 5.45056 5.85824 6.12080 6.22249 6.50111 6.89500 6.89664 7.60276 8.00391 9.03042 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.016759 B = 0.002556 C = 0.002359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1670.336317 B =10950.435598 C =11864.900070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.076 3.924 3 N -0.508 5.508 4 C 0.237 3.763 5 C -0.026 4.026 6 C -0.088 4.088 7 C -0.142 4.142 8 C -0.154 4.154 9 O -0.187 6.187 10 C -0.139 4.139 11 C 0.610 3.390 12 O -0.540 6.540 13 N -0.701 5.701 14 C 0.160 3.840 15 C -0.129 4.129 16 C 0.148 3.852 17 N -0.619 5.619 18 C -0.249 4.249 19 H 0.053 0.947 20 C -0.034 4.034 21 N -0.956 5.956 22 Si 0.944 3.056 23 H -0.269 1.269 24 H -0.312 1.312 25 H -0.263 1.263 26 C 0.122 3.878 27 C -0.128 4.128 28 H 0.090 0.910 29 H 0.085 0.915 30 H 0.090 0.910 31 H 0.127 0.873 32 H 0.119 0.881 33 H 0.067 0.933 34 H 0.069 0.931 35 H 0.068 0.932 36 H 0.062 0.938 37 H 0.070 0.930 38 H 0.063 0.937 39 H 0.031 0.969 40 H 0.413 0.587 41 H 0.081 0.919 42 H 0.061 0.939 43 H 0.069 0.931 44 H 0.034 0.966 45 H 0.059 0.941 46 H 0.262 0.738 47 H 0.036 0.964 48 H 0.059 0.941 49 H 0.090 0.910 50 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.665 30.385 -3.719 30.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.048 4.048 3 N -0.238 5.238 4 C 0.032 3.968 5 C -0.063 4.063 6 C -0.108 4.108 7 C -0.199 4.199 8 C -0.212 4.212 9 O -0.074 6.074 10 C -0.194 4.194 11 C 0.396 3.604 12 O -0.419 6.419 13 N -0.350 5.350 14 C 0.056 3.944 15 C -0.169 4.169 16 C 0.022 3.978 17 N -0.344 5.344 18 C -0.378 4.378 19 H 0.070 0.930 20 C -0.229 4.229 21 N -0.602 5.602 22 Si 0.773 3.227 23 H -0.195 1.195 24 H -0.241 1.241 25 H -0.187 1.187 26 C -0.004 4.004 27 C -0.168 4.168 28 H 0.108 0.892 29 H 0.103 0.897 30 H 0.109 0.891 31 H 0.146 0.854 32 H 0.137 0.863 33 H 0.085 0.915 34 H 0.088 0.912 35 H 0.087 0.913 36 H 0.081 0.919 37 H 0.089 0.911 38 H 0.082 0.918 39 H 0.050 0.950 40 H 0.249 0.751 41 H 0.099 0.901 42 H 0.079 0.921 43 H 0.087 0.913 44 H 0.052 0.948 45 H 0.078 0.922 46 H 0.071 0.929 47 H 0.054 0.946 48 H 0.077 0.923 49 H 0.108 0.892 50 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 0.777 30.624 -3.736 30.860 hybrid contribution 0.410 -1.538 -0.433 1.650 sum 1.187 29.085 -4.169 29.407 Atomic orbital electron populations 1.20412 0.84404 1.04481 1.04266 1.22417 0.99199 0.86557 0.96663 1.70386 1.01086 1.31009 1.21329 1.27368 0.96234 0.79216 0.93967 1.20732 0.89303 0.96214 1.00097 1.21115 0.99661 0.96919 0.93081 1.21788 0.97135 0.98042 1.02925 1.21947 1.01100 0.96628 1.01490 1.84462 1.28964 1.24340 1.69643 1.22732 0.82026 0.95876 1.18733 1.16410 0.85633 0.81747 0.76627 1.90843 1.16666 1.82323 1.52102 1.45966 1.10109 1.05672 1.73275 1.20834 0.98246 0.78420 0.96859 1.22223 1.01501 0.96858 0.96351 1.21011 0.90767 0.89473 0.96522 1.44516 1.47432 1.27644 1.14803 1.18851 1.33410 0.93588 0.91983 0.92965 1.25897 0.98810 0.96114 1.02058 1.69964 1.32746 1.18187 1.39314 0.85947 0.79949 0.75271 0.81516 1.19532 1.24101 1.18731 1.21375 0.97880 0.94675 0.86441 1.22175 0.98060 0.94711 1.01853 0.89170 0.89657 0.89145 0.85448 0.86318 0.91451 0.91242 0.91264 0.91900 0.91133 0.91779 0.95025 0.75108 0.90109 0.92060 0.91276 0.94788 0.92196 0.92906 0.94647 0.92290 0.89185 0.91013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.64 9.87 71.24 0.70 -0.93 16 2 C 0.08 1.86 7.16 41.84 0.30 2.15 16 3 N -0.51 -11.57 11.26 -291.05 -3.28 -14.85 16 4 C 0.24 4.44 6.73 88.29 0.59 5.04 16 5 C -0.03 -0.25 5.32 29.84 0.16 -0.09 16 6 C -0.09 -0.86 2.91 -10.79 -0.03 -0.89 16 7 C -0.14 -0.80 9.19 71.98 0.66 -0.14 16 8 C -0.15 -1.88 9.01 71.98 0.65 -1.24 16 9 O -0.19 -4.03 9.99 -7.13 -0.07 -4.10 16 10 C -0.14 -3.50 7.18 24.05 0.17 -3.33 16 11 C 0.61 16.94 7.75 86.46 0.67 17.61 16 12 O -0.54 -17.53 14.45 -4.29 -0.06 -17.59 16 13 N -0.70 -17.77 5.07 -446.33 -2.26 -20.03 16 14 C 0.16 4.77 2.42 45.02 0.11 4.88 16 15 C -0.13 -4.20 5.65 30.67 0.17 -4.03 16 16 C 0.15 5.75 6.52 86.36 0.56 6.32 16 17 N -0.62 -28.66 2.77 -699.08 -1.94 -30.60 16 18 C -0.25 -13.98 10.04 84.03 0.84 -13.14 16 19 H 0.05 3.22 8.06 -2.91 -0.02 3.19 16 20 C -0.03 -1.97 5.23 84.86 0.44 -1.52 16 21 N -0.96 -59.62 13.97 21.65 0.30 -59.32 16 22 Si 0.94 45.84 24.35 68.60 1.67 47.51 16 23 H -0.27 -12.08 6.62 99.48 0.66 -11.42 16 24 H -0.31 -15.52 7.11 99.48 0.71 -14.81 16 25 H -0.26 -12.31 6.63 99.48 0.66 -11.65 16 26 C 0.12 4.93 4.20 86.37 0.36 5.29 16 27 C -0.13 -3.97 5.55 30.67 0.17 -3.80 16 28 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 29 H 0.08 1.99 6.47 -2.39 -0.02 1.97 16 30 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 31 H 0.13 0.86 8.14 -2.39 -0.02 0.84 16 32 H 0.12 0.72 8.14 -2.39 -0.02 0.70 16 33 H 0.07 0.83 8.14 -2.38 -0.02 0.81 16 34 H 0.07 0.29 8.14 -2.39 -0.02 0.27 16 35 H 0.07 0.28 8.14 -2.39 -0.02 0.27 16 36 H 0.06 0.37 8.14 -2.39 -0.02 0.35 16 37 H 0.07 0.73 8.14 -2.38 -0.02 0.71 16 38 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 39 H 0.03 0.53 6.91 -2.39 -0.02 0.51 16 40 H 0.41 8.77 8.40 -92.71 -0.78 7.99 16 41 H 0.08 2.59 7.58 -2.39 -0.02 2.57 16 42 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 43 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 44 H 0.03 1.29 8.14 -2.38 -0.02 1.27 16 45 H 0.06 2.38 7.93 -2.39 -0.02 2.36 16 46 H 0.26 15.51 8.31 -92.71 -0.77 14.74 16 47 H 0.04 1.40 7.08 -2.39 -0.02 1.38 16 48 H 0.06 2.62 4.50 -2.39 -0.01 2.61 16 49 H 0.09 2.30 8.14 -2.39 -0.02 2.28 16 50 H 0.07 2.24 8.14 -2.38 -0.02 2.22 16 Total: -1.00 -70.52 394.29 0.97 -69.55 By element: Atomic # 1 Polarization: 17.18 SS G_CDS: 0.06 Total: 17.24 kcal Atomic # 6 Polarization: 5.64 SS G_CDS: 6.54 Total: 12.18 kcal Atomic # 7 Polarization: -117.63 SS G_CDS: -7.17 Total: -124.80 kcal Atomic # 8 Polarization: -21.55 SS G_CDS: -0.13 Total: -21.69 kcal Atomic # 14 Polarization: 45.84 SS G_CDS: 1.67 Total: 47.51 kcal Total: -70.52 0.97 -69.55 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000616162266.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.475 kcal (2) G-P(sol) polarization free energy of solvation -70.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.551 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds