Wall clock time and date at job start Tue Mar 31 2020 18:57:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 113.40381 * 2 1 4 4 C 1.50567 * 114.56904 * 226.41934 * 2 1 3 5 5 O 1.21279 * 131.85058 * 66.82707 * 4 2 1 6 6 N 1.34608 * 96.30346 * 246.82029 * 4 2 1 7 7 C 1.46498 * 134.66510 * 180.02562 * 6 4 2 8 8 N 1.46899 * 109.47284 * 269.64407 * 7 6 4 9 9 C 1.46905 * 111.00227 * 204.99862 * 8 7 6 10 10 C 1.50708 * 109.46614 * 75.60680 * 9 8 7 11 11 H 1.07993 * 120.00152 * 355.13044 * 10 9 8 12 12 C 1.37878 * 119.99773 * 175.12628 * 10 9 8 13 13 N 1.31517 * 119.99561 * 0.02562 * 12 10 9 14 14 Si 1.86792 * 120.00003 * 180.02562 * 12 10 9 15 15 H 1.48500 * 109.47056 * 60.00534 * 14 12 10 16 16 H 1.48504 * 109.46949 * 180.02562 * 14 12 10 17 17 H 1.48496 * 109.47567 * 300.00083 * 14 12 10 18 18 C 1.46898 * 111.00200 * 81.04642 * 8 7 6 19 19 C 1.53003 * 109.47517 * 199.77022 * 18 8 7 20 20 C 1.47194 * 109.47257 * 174.86961 * 19 18 8 21 21 N 6.92722 * 75.28886 * 214.74181 * 2 1 3 22 22 C 1.46357 * 90.66657 * 359.76378 * 6 4 2 23 23 H 1.08998 * 113.05122 * 115.62341 * 22 6 4 24 24 C 1.52999 * 113.04791 * 244.77618 * 22 6 4 25 25 H 1.09008 * 109.82317 * 41.06669 * 24 22 6 26 26 C 1.54373 * 109.83415 * 280.08339 * 24 22 6 27 27 C 1.55304 * 102.25736 * 219.12980 * 26 24 22 28 28 C 1.54954 * 100.93873 * 34.13254 * 27 26 24 29 29 O 1.43238 * 109.83096 * 161.94433 * 24 22 6 30 30 H 1.08993 * 109.47079 * 286.36842 * 1 2 3 31 31 H 1.08996 * 109.47241 * 46.37253 * 1 2 3 32 32 H 1.09006 * 109.46949 * 166.37528 * 1 2 3 33 33 H 1.08996 * 109.46991 * 193.62485 * 3 2 1 34 34 H 1.08997 * 109.47220 * 313.62735 * 3 2 1 35 35 H 1.09005 * 109.46673 * 73.62837 * 3 2 1 36 36 H 1.08996 * 109.47402 * 149.64305 * 7 6 4 37 37 H 1.09007 * 109.47416 * 29.64285 * 7 6 4 38 38 H 1.09001 * 109.47244 * 315.61238 * 9 8 7 39 39 H 1.08998 * 109.47495 * 195.60647 * 9 8 7 40 40 H 0.96999 * 120.00470 * 359.97438 * 13 12 10 41 41 H 1.08998 * 109.46984 * 319.77436 * 18 8 7 42 42 H 1.09007 * 109.47447 * 79.77048 * 18 8 7 43 43 H 1.09005 * 109.46771 * 294.87074 * 19 18 8 44 44 H 1.08993 * 109.46552 * 54.86817 * 19 18 8 45 45 H 1.08999 * 110.84679 * 337.32320 * 26 24 22 46 46 H 1.09009 * 110.84877 * 100.93750 * 26 24 22 47 47 H 1.08998 * 111.12512 * 276.21586 * 27 26 24 48 48 H 1.08997 * 111.13117 * 152.04891 * 27 26 24 49 49 H 1.08999 * 110.30804 * 204.64610 * 28 27 26 50 50 H 1.09000 * 110.39407 * 82.51515 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1377 1.4041 0.0000 4 6 2.1560 -0.9440 -0.9920 5 8 2.1692 -0.9516 -2.2047 6 7 2.6965 -1.7767 -0.0828 7 6 3.4999 -2.9995 -0.1556 8 7 2.6111 -4.1688 -0.1795 9 6 3.2975 -5.3625 0.3324 10 6 3.3960 -5.2799 1.8340 11 1 3.0609 -4.3919 2.3492 12 6 3.9141 -6.3382 2.5500 13 7 4.3226 -7.4194 1.9225 14 14 4.0356 -6.2363 4.4112 15 1 2.6799 -6.0437 4.9860 16 1 4.6232 -7.4940 4.9385 17 1 4.9008 -5.0900 4.7888 18 6 2.0853 -4.4030 -1.5310 19 6 0.8280 -5.2707 -1.4460 20 6 0.2319 -5.4034 -2.7853 21 7 -0.2291 -5.5057 -3.8183 22 6 2.1610 -0.9608 1.0079 23 1 1.4235 -1.4880 1.6129 24 6 3.2521 -0.3061 1.8575 25 1 4.0509 0.0622 1.2137 26 6 3.8183 -1.3311 2.8634 27 6 4.0167 -0.4669 4.1384 28 6 2.8236 0.5143 4.0171 29 8 2.6964 0.7781 2.6108 30 1 -0.3633 0.2896 0.9859 31 1 -0.3633 0.7090 -0.7438 32 1 -0.3633 -0.9988 -0.2421 33 1 3.1986 1.3408 -0.2421 34 1 1.6314 2.0192 -0.7438 35 1 2.0162 1.8526 0.9861 36 1 4.1532 -3.0574 0.7150 37 1 4.1041 -2.9838 -1.0628 38 1 4.2987 -5.4172 -0.0949 39 1 2.7343 -6.2531 0.0537 40 1 4.2592 -7.4725 0.9561 41 1 1.8373 -3.4483 -1.9948 42 1 2.8391 -4.9133 -2.1308 43 1 1.0928 -6.2578 -1.0667 44 1 0.1092 -4.8036 -0.7730 45 1 3.1021 -2.1324 3.0455 46 1 4.7701 -1.7321 2.5146 47 1 4.9675 0.0652 4.1083 48 1 3.9364 -1.0733 5.0406 49 1 3.0360 1.4369 4.5573 50 1 1.9127 0.0538 4.3996 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000811727236.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:57:45 Heat of formation + Delta-G solvation = -20.940962 kcal Electronic energy + Delta-G solvation = -31049.140269 eV Core-core repulsion = 27077.611561 eV Total energy + Delta-G solvation = -3971.528708 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.55766 -39.05640 -37.58708 -36.39446 -36.13101 -33.32134 -32.95136 -32.01364 -30.87881 -29.85635 -27.60871 -27.40953 -25.96020 -24.41266 -23.14882 -22.27649 -21.70002 -21.04736 -20.47385 -17.83453 -17.40055 -17.13719 -16.99116 -16.59272 -16.16225 -15.90536 -15.51275 -14.99951 -14.90419 -14.31290 -13.99108 -13.91477 -13.80635 -13.56145 -13.27420 -13.19583 -12.87837 -12.79987 -12.55867 -12.40343 -12.32018 -12.23374 -11.98418 -11.84039 -11.66306 -11.58866 -11.45830 -11.27751 -11.25687 -11.06003 -11.00483 -10.84036 -10.77292 -10.53511 -10.38238 -10.20987 -9.74568 -9.40446 -8.94402 -8.65531 -8.53481 -7.70159 -6.51618 -4.23576 2.67334 2.91986 2.97365 2.99026 3.30883 3.33635 3.51830 3.82373 3.87544 4.08673 4.39029 4.44003 4.53273 4.67323 4.83446 4.87670 5.00378 5.03073 5.18779 5.21589 5.23164 5.26124 5.28498 5.32266 5.48234 5.60350 5.64570 5.68088 5.73470 5.77338 5.78577 5.79110 5.84534 5.90433 5.96620 6.02557 6.06138 6.11959 6.17477 6.19900 6.33453 6.53356 6.70727 6.79000 6.95946 7.00444 7.51472 7.65224 7.74646 8.04399 8.35872 8.44289 8.68711 9.46895 10.86721 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.007182 B = 0.006112 C = 0.003572 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3897.571279 B = 4580.361099 C = 7837.751922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.105 4.105 3 C -0.122 4.122 4 C 0.519 3.481 5 O -0.525 6.525 6 N -0.603 5.603 7 C 0.309 3.691 8 N -0.541 5.541 9 C 0.183 3.817 10 C -0.589 4.589 11 H 0.058 0.942 12 C 0.019 3.981 13 N -0.910 5.910 14 Si 1.066 2.934 15 H -0.287 1.287 16 H -0.283 1.283 17 H -0.288 1.288 18 C 0.057 3.943 19 C -0.022 4.022 20 C 0.217 3.783 21 N -0.453 5.453 22 C 0.126 3.874 23 H 0.099 0.901 24 C 0.082 3.918 25 H 0.083 0.917 26 C -0.151 4.151 27 C -0.156 4.156 28 C 0.048 3.952 29 O -0.368 6.368 30 H 0.072 0.928 31 H 0.065 0.935 32 H 0.061 0.939 33 H 0.054 0.946 34 H 0.060 0.940 35 H 0.090 0.910 36 H 0.108 0.892 37 H 0.050 0.950 38 H -0.015 1.015 39 H 0.030 0.970 40 H 0.268 0.732 41 H 0.073 0.927 42 H 0.037 0.963 43 H 0.112 0.888 44 H 0.114 0.886 45 H 0.090 0.910 46 H 0.085 0.915 47 H 0.075 0.925 48 H 0.083 0.917 49 H 0.082 0.918 50 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.625 15.689 4.785 16.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.109 4.109 3 C -0.179 4.179 4 C 0.305 3.695 5 O -0.399 6.399 6 N -0.340 5.340 7 C 0.099 3.901 8 N -0.267 5.267 9 C 0.058 3.942 10 C -0.627 4.627 11 H 0.076 0.924 12 C -0.186 4.186 13 N -0.546 5.546 14 Si 0.894 3.106 15 H -0.213 1.213 16 H -0.209 1.209 17 H -0.214 1.214 18 C -0.073 4.073 19 C -0.062 4.062 20 C -0.100 4.100 21 N -0.131 5.131 22 C 0.021 3.979 23 H 0.117 0.883 24 C 0.023 3.977 25 H 0.101 0.899 26 C -0.188 4.188 27 C -0.193 4.193 28 C -0.029 4.029 29 O -0.287 6.287 30 H 0.091 0.909 31 H 0.084 0.916 32 H 0.080 0.920 33 H 0.073 0.927 34 H 0.079 0.921 35 H 0.109 0.891 36 H 0.126 0.874 37 H 0.068 0.932 38 H 0.003 0.997 39 H 0.048 0.952 40 H 0.078 0.922 41 H 0.092 0.908 42 H 0.055 0.945 43 H 0.130 0.870 44 H 0.132 0.868 45 H 0.109 0.891 46 H 0.103 0.897 47 H 0.094 0.906 48 H 0.102 0.898 49 H 0.101 0.899 50 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -3.148 14.724 4.140 15.616 hybrid contribution 0.512 0.153 -1.318 1.423 sum -2.636 14.877 2.821 15.370 Atomic orbital electron populations 1.21434 0.90683 1.02694 1.02829 1.22252 0.97911 0.96449 0.94309 1.21581 1.00022 0.92648 1.03685 1.22252 0.77709 0.82476 0.87102 1.90666 1.60877 1.75415 1.12951 1.50154 1.52645 1.23811 1.07398 1.21732 0.87881 0.78583 1.01864 1.61711 1.39141 1.06205 1.19633 1.19916 0.91302 0.86380 0.96576 1.21881 1.45400 1.04777 0.90658 0.92384 1.25763 0.93630 0.92418 1.06768 1.70811 1.44091 1.28533 1.11122 0.83569 0.76516 0.76073 0.74430 1.21321 1.20851 1.21415 1.21978 0.94612 0.99150 0.91561 1.19288 0.97796 1.03840 0.85286 1.29369 0.93113 0.92551 0.95011 1.81147 1.10105 1.09639 1.12195 1.22610 0.94823 0.89505 0.90969 0.88308 1.22861 0.94230 0.87134 0.93429 0.89933 1.23226 1.03197 0.98309 0.94084 1.23252 0.98997 0.97954 0.99121 1.23410 0.97552 0.99002 0.82890 1.88417 1.82229 1.41392 1.16646 0.90938 0.91578 0.92040 0.92663 0.92102 0.89126 0.87395 0.93202 0.99735 0.95201 0.92184 0.90826 0.94479 0.87044 0.86784 0.89124 0.89679 0.90642 0.89804 0.89949 0.92091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.27 9.25 37.16 0.34 -0.92 16 2 C -0.11 -1.29 1.52 -155.79 -0.24 -1.53 16 3 C -0.12 -1.31 8.03 37.16 0.30 -1.01 16 4 C 0.52 8.22 7.59 -23.39 -0.18 8.04 16 5 O -0.52 -10.16 17.38 5.56 0.10 -10.06 16 6 N -0.60 -9.06 3.35 -195.81 -0.66 -9.72 16 7 C 0.31 5.15 6.39 -63.32 -0.40 4.74 16 8 N -0.54 -9.69 4.45 -239.97 -1.07 -10.76 16 9 C 0.18 3.93 3.87 -4.97 -0.02 3.91 16 10 C -0.59 -13.98 8.51 -34.44 -0.29 -14.27 16 11 H 0.06 1.35 7.68 -52.49 -0.40 0.95 16 12 C 0.02 0.48 5.46 -17.82 -0.10 0.38 16 13 N -0.91 -24.99 13.65 55.43 0.76 -24.24 16 14 Si 1.07 22.50 29.90 -169.99 -5.08 17.41 16 15 H -0.29 -5.81 7.11 56.52 0.40 -5.41 16 16 H -0.28 -6.19 7.11 56.52 0.40 -5.78 16 17 H -0.29 -5.68 7.11 56.52 0.40 -5.28 16 18 C 0.06 0.93 4.78 -3.82 -0.02 0.92 16 19 C -0.02 -0.31 5.75 -29.52 -0.17 -0.48 16 20 C 0.22 3.44 15.43 -20.77 -0.32 3.12 16 21 N -0.45 -8.15 18.54 42.15 0.78 -7.37 16 22 C 0.13 1.59 3.48 -80.34 -0.28 1.31 16 23 H 0.10 1.30 7.89 -51.93 -0.41 0.89 16 24 C 0.08 0.94 2.71 -26.01 -0.07 0.87 16 25 H 0.08 0.97 7.32 -51.92 -0.38 0.59 16 26 C -0.15 -1.78 6.05 -24.79 -0.15 -1.93 16 27 C -0.16 -1.48 7.16 -24.48 -0.18 -1.66 16 28 C 0.05 0.43 7.78 38.19 0.30 0.73 16 29 O -0.37 -3.95 8.48 -35.23 -0.30 -4.25 16 30 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.07 0.66 8.12 -51.93 -0.42 0.23 16 32 H 0.06 0.71 8.04 -51.93 -0.42 0.29 16 33 H 0.05 0.62 7.26 -51.93 -0.38 0.24 16 34 H 0.06 0.61 8.12 -51.93 -0.42 0.19 16 35 H 0.09 0.92 5.95 -51.93 -0.31 0.61 16 36 H 0.11 1.86 6.48 -51.93 -0.34 1.52 16 37 H 0.05 0.84 7.92 -51.93 -0.41 0.43 16 38 H -0.02 -0.34 8.00 -51.93 -0.42 -0.76 16 39 H 0.03 0.67 6.24 -51.93 -0.32 0.35 16 40 H 0.27 7.30 7.19 -40.82 -0.29 7.01 16 41 H 0.07 1.28 6.56 -51.93 -0.34 0.94 16 42 H 0.04 0.62 8.00 -51.93 -0.42 0.20 16 43 H 0.11 1.61 6.90 -51.93 -0.36 1.25 16 44 H 0.11 1.54 8.14 -51.93 -0.42 1.11 16 45 H 0.09 1.23 7.65 -51.93 -0.40 0.83 16 46 H 0.08 1.05 7.90 -51.92 -0.41 0.64 16 47 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 48 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 49 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 50 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 LS Contribution 402.88 15.07 6.07 6.07 Total: -1.00 -29.49 402.88 -9.05 -38.54 By element: Atomic # 1 Polarization: 10.33 SS G_CDS: -8.17 Total: 2.16 kcal Atomic # 6 Polarization: 3.69 SS G_CDS: -1.47 Total: 2.22 kcal Atomic # 7 Polarization: -51.90 SS G_CDS: -0.19 Total: -52.08 kcal Atomic # 8 Polarization: -14.11 SS G_CDS: -0.20 Total: -14.31 kcal Atomic # 14 Polarization: 22.50 SS G_CDS: -5.08 Total: 17.41 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -29.49 -9.05 -38.54 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000811727236.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.596 kcal (2) G-P(sol) polarization free energy of solvation -29.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.537 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds