Wall clock time and date at job start Tue Mar 31 2020 18:57:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 113.40381 * 2 1 4 4 C 1.50567 * 114.56904 * 226.41934 * 2 1 3 5 5 O 1.21279 * 131.85058 * 66.82707 * 4 2 1 6 6 N 1.34608 * 96.30346 * 246.82029 * 4 2 1 7 7 C 1.46498 * 134.66510 * 180.02562 * 6 4 2 8 8 N 1.46899 * 109.47284 * 269.64407 * 7 6 4 9 9 C 1.46905 * 111.00227 * 204.99862 * 8 7 6 10 10 C 1.50708 * 109.46614 * 75.60680 * 9 8 7 11 11 H 1.07993 * 120.00152 * 355.13044 * 10 9 8 12 12 C 1.37878 * 119.99773 * 175.12628 * 10 9 8 13 13 N 1.31517 * 119.99561 * 0.02562 * 12 10 9 14 14 Si 1.86792 * 120.00003 * 180.02562 * 12 10 9 15 15 H 1.48500 * 109.47056 * 60.00534 * 14 12 10 16 16 H 1.48504 * 109.46949 * 180.02562 * 14 12 10 17 17 H 1.48496 * 109.47567 * 300.00083 * 14 12 10 18 18 C 1.46898 * 111.00200 * 81.04642 * 8 7 6 19 19 C 1.53003 * 109.47517 * 199.77022 * 18 8 7 20 20 C 1.47194 * 109.47257 * 174.86961 * 19 18 8 21 21 N 6.92722 * 75.28886 * 214.74181 * 2 1 3 22 22 C 1.46357 * 90.66657 * 359.76378 * 6 4 2 23 23 H 1.08998 * 113.05122 * 115.62341 * 22 6 4 24 24 C 1.52999 * 113.04791 * 244.77618 * 22 6 4 25 25 H 1.09008 * 109.82317 * 41.06669 * 24 22 6 26 26 C 1.54373 * 109.83415 * 280.08339 * 24 22 6 27 27 C 1.55304 * 102.25736 * 219.12980 * 26 24 22 28 28 C 1.54954 * 100.93873 * 34.13254 * 27 26 24 29 29 O 1.43238 * 109.83096 * 161.94433 * 24 22 6 30 30 H 1.08993 * 109.47079 * 286.36842 * 1 2 3 31 31 H 1.08996 * 109.47241 * 46.37253 * 1 2 3 32 32 H 1.09006 * 109.46949 * 166.37528 * 1 2 3 33 33 H 1.08996 * 109.46991 * 193.62485 * 3 2 1 34 34 H 1.08997 * 109.47220 * 313.62735 * 3 2 1 35 35 H 1.09005 * 109.46673 * 73.62837 * 3 2 1 36 36 H 1.08996 * 109.47402 * 149.64305 * 7 6 4 37 37 H 1.09007 * 109.47416 * 29.64285 * 7 6 4 38 38 H 1.09001 * 109.47244 * 315.61238 * 9 8 7 39 39 H 1.08998 * 109.47495 * 195.60647 * 9 8 7 40 40 H 0.96999 * 120.00470 * 359.97438 * 13 12 10 41 41 H 1.08998 * 109.46984 * 319.77436 * 18 8 7 42 42 H 1.09007 * 109.47447 * 79.77048 * 18 8 7 43 43 H 1.09005 * 109.46771 * 294.87074 * 19 18 8 44 44 H 1.08993 * 109.46552 * 54.86817 * 19 18 8 45 45 H 1.08999 * 110.84679 * 337.32320 * 26 24 22 46 46 H 1.09009 * 110.84877 * 100.93750 * 26 24 22 47 47 H 1.08998 * 111.12512 * 276.21586 * 27 26 24 48 48 H 1.08997 * 111.13117 * 152.04891 * 27 26 24 49 49 H 1.08999 * 110.30804 * 204.64610 * 28 27 26 50 50 H 1.09000 * 110.39407 * 82.51515 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1377 1.4041 0.0000 4 6 2.1560 -0.9440 -0.9920 5 8 2.1692 -0.9516 -2.2047 6 7 2.6965 -1.7767 -0.0828 7 6 3.4999 -2.9995 -0.1556 8 7 2.6111 -4.1688 -0.1795 9 6 3.2975 -5.3625 0.3324 10 6 3.3960 -5.2799 1.8340 11 1 3.0609 -4.3919 2.3492 12 6 3.9141 -6.3382 2.5500 13 7 4.3226 -7.4194 1.9225 14 14 4.0356 -6.2363 4.4112 15 1 2.6799 -6.0437 4.9860 16 1 4.6232 -7.4940 4.9385 17 1 4.9008 -5.0900 4.7888 18 6 2.0853 -4.4030 -1.5310 19 6 0.8280 -5.2707 -1.4460 20 6 0.2319 -5.4034 -2.7853 21 7 -0.2291 -5.5057 -3.8183 22 6 2.1610 -0.9608 1.0079 23 1 1.4235 -1.4880 1.6129 24 6 3.2521 -0.3061 1.8575 25 1 4.0509 0.0622 1.2137 26 6 3.8183 -1.3311 2.8634 27 6 4.0167 -0.4669 4.1384 28 6 2.8236 0.5143 4.0171 29 8 2.6964 0.7781 2.6108 30 1 -0.3633 0.2896 0.9859 31 1 -0.3633 0.7090 -0.7438 32 1 -0.3633 -0.9988 -0.2421 33 1 3.1986 1.3408 -0.2421 34 1 1.6314 2.0192 -0.7438 35 1 2.0162 1.8526 0.9861 36 1 4.1532 -3.0574 0.7150 37 1 4.1041 -2.9838 -1.0628 38 1 4.2987 -5.4172 -0.0949 39 1 2.7343 -6.2531 0.0537 40 1 4.2592 -7.4725 0.9561 41 1 1.8373 -3.4483 -1.9948 42 1 2.8391 -4.9133 -2.1308 43 1 1.0928 -6.2578 -1.0667 44 1 0.1092 -4.8036 -0.7730 45 1 3.1021 -2.1324 3.0455 46 1 4.7701 -1.7321 2.5146 47 1 4.9675 0.0652 4.1083 48 1 3.9364 -1.0733 5.0406 49 1 3.0360 1.4369 4.5573 50 1 1.9127 0.0538 4.3996 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000811727236.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:57:44 Heat of formation + Delta-G solvation = -38.096199 kcal Electronic energy + Delta-G solvation = -31049.884175 eV Core-core repulsion = 27077.611561 eV Total energy + Delta-G solvation = -3972.272615 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.68131 -39.97858 -39.04680 -37.71788 -37.50007 -35.01908 -34.20919 -32.90129 -32.23415 -30.75765 -29.09150 -28.30910 -27.45888 -25.43994 -24.86491 -23.54311 -22.52067 -22.04952 -21.90288 -19.07769 -18.85979 -18.62338 -18.11038 -17.77750 -17.23426 -16.97469 -16.58367 -16.38577 -16.27320 -15.59641 -15.47162 -15.09851 -14.97613 -14.68579 -14.62642 -14.30071 -14.15270 -13.85952 -13.73326 -13.67547 -13.62810 -13.46969 -13.17963 -13.08299 -12.98353 -12.70489 -12.65944 -12.45912 -12.43331 -12.30574 -12.17757 -12.02082 -11.94148 -11.87184 -11.64517 -11.41540 -10.77701 -10.63873 -10.60922 -10.45875 -9.89316 -9.26560 -8.52062 -6.24109 1.40253 1.59474 1.62197 1.65782 1.68410 1.79625 1.86044 2.62235 2.75355 2.78087 2.93894 3.27189 3.41256 3.50111 3.64699 3.73133 3.88972 3.90373 4.05045 4.07904 4.15035 4.16596 4.29249 4.33750 4.39036 4.43259 4.49246 4.69713 4.78113 4.84427 4.85950 4.87727 4.91566 4.93230 4.97165 4.99222 5.04200 5.06551 5.09539 5.11705 5.28254 5.31723 5.42987 5.50250 5.70013 5.86378 6.02376 6.11454 6.24153 6.42527 6.50019 6.70230 7.15638 7.54204 8.86827 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.007182 B = 0.006112 C = 0.003572 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3897.571279 B = 4580.361099 C = 7837.751922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.090 4.090 3 C -0.117 4.117 4 C 0.508 3.492 5 O -0.566 6.566 6 N -0.605 5.605 7 C 0.312 3.688 8 N -0.536 5.536 9 C 0.194 3.806 10 C -0.581 4.581 11 H 0.063 0.937 12 C -0.030 4.030 13 N -0.944 5.944 14 Si 1.106 2.894 15 H -0.270 1.270 16 H -0.297 1.297 17 H -0.265 1.265 18 C 0.062 3.938 19 C -0.010 4.010 20 C 0.239 3.761 21 N -0.487 5.487 22 C 0.127 3.873 23 H 0.099 0.901 24 C 0.092 3.908 25 H 0.080 0.920 26 C -0.154 4.154 27 C -0.151 4.151 28 C 0.046 3.954 29 O -0.370 6.370 30 H 0.095 0.905 31 H 0.075 0.925 32 H 0.049 0.951 33 H 0.047 0.953 34 H 0.070 0.930 35 H 0.103 0.897 36 H 0.102 0.898 37 H 0.043 0.957 38 H -0.035 1.035 39 H 0.022 0.978 40 H 0.256 0.744 41 H 0.065 0.935 42 H 0.032 0.968 43 H 0.116 0.884 44 H 0.132 0.868 45 H 0.072 0.928 46 H 0.073 0.927 47 H 0.084 0.916 48 H 0.090 0.910 49 H 0.104 0.896 50 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.578 17.843 6.872 19.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.093 4.093 3 C -0.174 4.174 4 C 0.296 3.704 5 O -0.444 6.444 6 N -0.340 5.340 7 C 0.102 3.898 8 N -0.262 5.262 9 C 0.068 3.932 10 C -0.619 4.619 11 H 0.082 0.918 12 C -0.228 4.228 13 N -0.582 5.582 14 Si 0.929 3.071 15 H -0.195 1.195 16 H -0.223 1.223 17 H -0.190 1.190 18 C -0.068 4.068 19 C -0.050 4.050 20 C -0.078 4.078 21 N -0.165 5.165 22 C 0.023 3.977 23 H 0.117 0.883 24 C 0.033 3.967 25 H 0.097 0.903 26 C -0.192 4.192 27 C -0.188 4.188 28 C -0.030 4.030 29 O -0.289 6.289 30 H 0.114 0.886 31 H 0.094 0.906 32 H 0.068 0.932 33 H 0.066 0.934 34 H 0.089 0.911 35 H 0.122 0.878 36 H 0.120 0.880 37 H 0.061 0.939 38 H -0.018 1.018 39 H 0.040 0.960 40 H 0.065 0.935 41 H 0.084 0.916 42 H 0.051 0.949 43 H 0.134 0.866 44 H 0.150 0.850 45 H 0.091 0.909 46 H 0.092 0.908 47 H 0.102 0.898 48 H 0.108 0.892 49 H 0.123 0.877 50 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -4.117 16.924 6.242 18.502 hybrid contribution 0.822 -0.467 -1.994 2.207 sum -3.295 16.456 4.248 17.312 Atomic orbital electron populations 1.21489 0.89111 1.02414 1.04513 1.22341 0.98976 0.96486 0.91544 1.21588 0.99534 0.91586 1.04723 1.23068 0.77351 0.83082 0.86913 1.90635 1.62373 1.76505 1.14836 1.50197 1.52109 1.23125 1.08587 1.21571 0.87977 0.78950 1.01275 1.61677 1.38739 1.05291 1.20509 1.19651 0.90389 0.87478 0.95674 1.22153 1.43679 1.04376 0.91715 0.91850 1.27011 0.93265 0.92154 1.10337 1.70932 1.46733 1.30057 1.10488 0.83056 0.77611 0.76150 0.70271 1.19545 1.22308 1.19029 1.21919 0.95264 0.99056 0.90545 1.19246 0.97121 1.03771 0.84856 1.29444 0.92193 0.91440 0.94749 1.81169 1.11353 1.10857 1.13165 1.22748 0.95154 0.89151 0.90647 0.88325 1.22657 0.93545 0.87215 0.93241 0.90260 1.23177 1.02065 0.98272 0.95672 1.23258 0.99820 0.97741 0.97993 1.23578 0.97507 0.99982 0.81954 1.88401 1.82146 1.40724 1.17622 0.88632 0.90646 0.93191 0.93406 0.91125 0.87842 0.87996 0.93884 1.01754 0.95975 0.93464 0.91601 0.94928 0.86564 0.85043 0.90924 0.90823 0.89782 0.89157 0.87748 0.91520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.23 9.25 71.98 0.67 -1.56 16 2 C -0.09 -2.04 1.52 -53.01 -0.08 -2.12 16 3 C -0.12 -2.24 8.03 71.98 0.58 -1.67 16 4 C 0.51 15.92 7.59 79.70 0.61 16.52 16 5 O -0.57 -22.12 17.38 -3.03 -0.05 -22.18 16 6 N -0.60 -17.99 3.35 -891.90 -2.98 -20.98 16 7 C 0.31 10.54 6.39 170.81 1.09 11.63 16 8 N -0.54 -19.25 4.45 -913.13 -4.07 -23.32 16 9 C 0.19 8.44 3.87 85.56 0.33 8.77 16 10 C -0.58 -27.45 8.51 25.60 0.22 -27.23 16 11 H 0.06 2.89 7.68 -2.91 -0.02 2.87 16 12 C -0.03 -1.49 5.46 84.65 0.46 -1.03 16 13 N -0.94 -52.65 13.65 21.45 0.29 -52.36 16 14 Si 1.11 44.39 29.90 68.60 2.05 46.44 16 15 H -0.27 -10.05 7.11 99.48 0.71 -9.35 16 16 H -0.30 -12.55 7.11 99.48 0.71 -11.84 16 17 H -0.27 -9.60 7.11 99.48 0.71 -8.89 16 18 C 0.06 2.04 4.78 86.30 0.41 2.45 16 19 C -0.01 -0.27 5.75 28.79 0.17 -0.11 16 20 C 0.24 7.44 15.43 89.44 1.38 8.82 16 21 N -0.49 -17.40 18.54 20.00 0.37 -17.03 16 22 C 0.13 3.04 3.48 37.03 0.13 3.17 16 23 H 0.10 2.41 7.89 -2.39 -0.02 2.39 16 24 C 0.09 1.96 2.71 31.06 0.08 2.04 16 25 H 0.08 1.77 7.32 -2.38 -0.02 1.75 16 26 C -0.15 -3.43 6.05 31.85 0.19 -3.24 16 27 C -0.15 -2.48 7.16 32.05 0.23 -2.25 16 28 C 0.05 0.67 7.78 72.65 0.57 1.23 16 29 O -0.37 -6.85 8.48 -148.98 -1.26 -8.11 16 30 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 31 H 0.07 1.30 8.12 -2.39 -0.02 1.28 16 32 H 0.05 1.07 8.04 -2.38 -0.02 1.05 16 33 H 0.05 0.99 7.26 -2.39 -0.02 0.98 16 34 H 0.07 1.23 8.12 -2.39 -0.02 1.22 16 35 H 0.10 1.76 5.95 -2.38 -0.01 1.75 16 36 H 0.10 3.56 6.48 -2.39 -0.02 3.54 16 37 H 0.04 1.51 7.92 -2.38 -0.02 1.49 16 38 H -0.04 -1.67 8.00 -2.39 -0.02 -1.69 16 39 H 0.02 1.01 6.24 -2.39 -0.01 0.99 16 40 H 0.26 14.37 7.19 -92.71 -0.67 13.71 16 41 H 0.07 2.31 6.56 -2.39 -0.02 2.30 16 42 H 0.03 1.10 8.00 -2.38 -0.02 1.08 16 43 H 0.12 3.27 6.90 -2.38 -0.02 3.25 16 44 H 0.13 3.32 8.14 -2.39 -0.02 3.30 16 45 H 0.07 1.88 7.65 -2.39 -0.02 1.86 16 46 H 0.07 1.79 7.90 -2.38 -0.02 1.77 16 47 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 48 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 49 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 50 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 Total: -1.00 -63.73 402.88 2.41 -61.32 By element: Atomic # 1 Polarization: 19.76 SS G_CDS: 1.03 Total: 20.79 kcal Atomic # 6 Polarization: 8.39 SS G_CDS: 7.03 Total: 15.42 kcal Atomic # 7 Polarization: -107.30 SS G_CDS: -6.39 Total: -113.69 kcal Atomic # 8 Polarization: -28.97 SS G_CDS: -1.32 Total: -30.29 kcal Atomic # 14 Polarization: 44.39 SS G_CDS: 2.05 Total: 46.44 kcal Total: -63.73 2.41 -61.32 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000811727236.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.223 kcal (2) G-P(sol) polarization free energy of solvation -63.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.319 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds