Wall clock time and date at job start Tue Mar 31 2020 18:57:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 112.90609 * 2 1 4 4 C 1.51513 * 113.69443 * 228.56252 * 2 1 3 5 5 O 1.21278 * 134.17144 * 65.57789 * 4 2 1 6 6 N 1.36120 * 91.53941 * 245.57832 * 4 2 1 7 7 C 1.46496 * 132.37539 * 179.97438 * 6 4 2 8 8 N 1.46900 * 109.47368 * 273.82816 * 7 6 4 9 9 C 1.46902 * 110.99913 * 209.15652 * 8 7 6 10 10 C 1.50700 * 109.46628 * 172.58320 * 9 8 7 11 11 H 1.07996 * 120.00346 * 4.52975 * 10 9 8 12 12 C 1.37879 * 119.99598 * 184.52168 * 10 9 8 13 13 N 1.31510 * 120.00182 * 0.02562 * 12 10 9 14 14 Si 1.86804 * 119.99947 * 180.02562 * 12 10 9 15 15 H 1.48498 * 109.47210 * 90.00024 * 14 12 10 16 16 H 1.48498 * 109.47005 * 210.00316 * 14 12 10 17 17 H 1.48502 * 109.47138 * 329.99917 * 14 12 10 18 18 C 1.46906 * 110.99777 * 85.20605 * 8 7 6 19 19 C 1.53001 * 109.46939 * 65.53251 * 18 8 7 20 20 C 1.47201 * 109.46938 * 184.85286 * 19 18 8 21 21 N 7.17128 * 100.76768 * 224.87079 * 2 1 3 22 22 C 1.47382 * 95.24281 * 359.94377 * 6 4 2 23 23 H 1.09005 * 113.70765 * 245.64998 * 22 6 4 24 24 C 1.53000 * 113.70976 * 114.45544 * 22 6 4 25 25 H 1.09004 * 109.82130 * 316.18685 * 24 22 6 26 26 C 1.54382 * 109.83429 * 195.20564 * 24 22 6 27 27 C 1.55305 * 102.25164 * 219.12977 * 26 24 22 28 28 C 1.54945 * 100.94419 * 34.13324 * 27 26 24 29 29 O 1.43242 * 109.83071 * 77.06951 * 24 22 6 30 30 H 1.09000 * 109.46970 * 58.29556 * 1 2 3 31 31 H 1.09000 * 109.47261 * 178.28946 * 1 2 3 32 32 H 1.09002 * 109.47593 * 298.29196 * 1 2 3 33 33 H 1.08997 * 109.47442 * 69.66789 * 3 2 1 34 34 H 1.09007 * 109.47385 * 189.66895 * 3 2 1 35 35 H 1.08999 * 109.47116 * 309.66481 * 3 2 1 36 36 H 1.09007 * 109.47052 * 33.82899 * 7 6 4 37 37 H 1.09001 * 109.47186 * 153.82762 * 7 6 4 38 38 H 1.08994 * 109.47171 * 292.58372 * 9 8 7 39 39 H 1.08997 * 109.46909 * 52.58867 * 9 8 7 40 40 H 0.97007 * 120.00074 * 179.97438 * 13 12 10 41 41 H 1.08994 * 109.46762 * 185.52905 * 18 8 7 42 42 H 1.09000 * 109.47165 * 305.53682 * 18 8 7 43 43 H 1.08992 * 109.47578 * 304.85399 * 19 18 8 44 44 H 1.09004 * 109.47176 * 64.86061 * 19 18 8 45 45 H 1.08994 * 110.84761 * 337.31751 * 26 24 22 46 46 H 1.08998 * 110.84729 * 100.93877 * 26 24 22 47 47 H 1.08998 * 111.12746 * 276.21224 * 27 26 24 48 48 H 1.09007 * 111.16057 * 152.06969 * 27 26 24 49 49 H 1.09000 * 110.30937 * 204.64197 * 28 27 26 50 50 H 1.09004 * 110.39156 * 82.51356 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1255 1.4093 0.0000 4 6 2.1388 -0.9182 -1.0401 5 8 2.1491 -0.9322 -2.2528 6 7 2.6687 -1.7196 -0.0758 7 6 3.4764 -2.9401 -0.1401 8 7 2.5917 -4.1072 -0.2545 9 6 3.2089 -5.2966 0.3477 10 6 2.2075 -6.4223 0.3757 11 1 1.2370 -6.2933 -0.0802 12 6 2.5303 -7.6172 0.9834 13 7 3.7119 -7.7742 1.5389 14 14 1.2893 -9.0130 1.0175 15 1 1.4672 -9.8631 -0.1870 16 1 1.5000 -9.8328 2.2376 17 1 -0.0858 -8.4525 1.0292 18 6 2.2268 -4.3559 -1.6556 19 6 3.4757 -4.7530 -2.4451 20 6 3.1327 -4.8888 -3.8702 21 7 2.8698 -4.9928 -4.9703 22 6 2.1477 -0.9315 1.0554 23 1 2.9254 -0.4592 1.6556 24 6 1.1120 -1.6772 1.8994 25 1 0.4088 -2.1962 1.2480 26 6 0.3546 -0.6791 2.8014 27 6 0.2071 -1.4777 4.1252 28 6 1.5291 -2.2858 4.1302 29 8 1.7694 -2.6202 2.7540 30 1 -0.3633 0.5401 -0.8743 31 1 -0.3634 -1.0272 -0.0307 32 1 -0.3634 0.4871 0.9049 33 1 1.9380 1.8830 0.9636 34 1 3.2001 1.3497 -0.1726 35 1 1.6627 1.9993 -0.7911 36 1 4.1334 -2.8956 -1.0088 37 1 4.0768 -3.0266 0.7655 38 1 4.0748 -5.5951 -0.2430 39 1 3.5250 -5.0661 1.3651 40 1 3.9390 -8.6147 1.9668 41 1 1.4953 -5.1625 -1.7028 42 1 1.7979 -3.4507 -2.0855 43 1 4.2399 -3.9849 -2.3270 44 1 3.8552 -5.7038 -2.0707 45 1 0.9421 0.2255 2.9576 46 1 -0.6225 -0.4408 2.3812 47 1 -0.6580 -2.1399 4.0903 48 1 0.1522 -0.8089 4.9842 49 1 1.4164 -3.1919 4.7255 50 1 2.3450 -1.6769 4.5197 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000811727238.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:57:57 Heat of formation + Delta-G solvation = -11.903895 kcal Electronic energy + Delta-G solvation = -31144.427977 eV Core-core repulsion = 27173.291146 eV Total energy + Delta-G solvation = -3971.136831 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.28796 -38.88229 -37.65686 -36.45515 -35.82478 -33.23541 -32.49911 -31.83159 -30.23726 -29.86165 -27.91335 -27.46094 -25.76877 -24.65236 -23.61814 -21.78644 -21.73080 -21.08401 -19.79983 -17.80354 -17.40822 -16.83626 -16.68431 -16.32790 -16.18003 -15.72834 -15.43024 -15.05030 -14.48706 -14.35606 -13.94922 -13.88986 -13.79059 -13.50109 -13.33648 -13.23740 -12.90722 -12.60580 -12.45829 -12.42644 -12.25160 -11.99670 -11.91968 -11.69850 -11.53143 -11.47817 -11.39574 -11.10763 -11.08909 -11.00103 -10.88564 -10.82828 -10.78020 -10.60562 -10.20164 -9.95822 -9.48835 -9.40399 -9.22394 -8.58563 -8.41358 -7.37148 -6.05453 -4.05814 2.65793 3.09051 3.20140 3.22486 3.31127 3.38093 3.42129 3.87064 3.92213 4.37957 4.43938 4.45567 4.50294 4.56149 4.84006 4.87535 4.92058 5.06404 5.18679 5.26535 5.28002 5.32621 5.36038 5.40114 5.52219 5.54699 5.58038 5.63301 5.66415 5.68954 5.72495 5.73928 5.78030 5.86217 5.92379 5.97798 6.00619 6.09500 6.24950 6.35124 6.64452 6.74276 6.89443 7.20367 7.21385 7.28818 7.74060 7.94710 8.03569 8.10851 8.40616 8.53108 9.00168 9.58466 11.05002 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.008900 B = 0.005124 C = 0.003578 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3145.229806 B = 5463.605280 C = 7823.031284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.117 4.117 3 C -0.125 4.125 4 C 0.532 3.468 5 O -0.508 6.508 6 N -0.605 5.605 7 C 0.282 3.718 8 N -0.532 5.532 9 C 0.196 3.804 10 C -0.503 4.503 11 H 0.062 0.938 12 C 0.060 3.940 13 N -0.896 5.896 14 Si 0.892 3.108 15 H -0.282 1.282 16 H -0.288 1.288 17 H -0.274 1.274 18 C 0.072 3.928 19 C -0.070 4.070 20 C 0.226 3.774 21 N -0.462 5.462 22 C 0.135 3.865 23 H 0.096 0.904 24 C 0.086 3.914 25 H 0.093 0.907 26 C -0.151 4.151 27 C -0.156 4.156 28 C 0.047 3.953 29 O -0.347 6.347 30 H 0.065 0.935 31 H 0.068 0.932 32 H 0.074 0.926 33 H 0.068 0.932 34 H 0.060 0.940 35 H 0.067 0.933 36 H 0.053 0.947 37 H 0.092 0.908 38 H -0.004 1.004 39 H 0.041 0.959 40 H 0.261 0.739 41 H 0.090 0.910 42 H 0.063 0.937 43 H 0.096 0.904 44 H 0.124 0.876 45 H 0.077 0.923 46 H 0.086 0.914 47 H 0.078 0.922 48 H 0.078 0.922 49 H 0.084 0.916 50 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.705 18.552 6.840 20.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.121 4.121 3 C -0.183 4.183 4 C 0.317 3.683 5 O -0.382 6.382 6 N -0.341 5.341 7 C 0.071 3.929 8 N -0.256 5.256 9 C 0.071 3.929 10 C -0.542 4.542 11 H 0.080 0.920 12 C -0.142 4.142 13 N -0.536 5.536 14 Si 0.720 3.280 15 H -0.208 1.208 16 H -0.213 1.213 17 H -0.199 1.199 18 C -0.058 4.058 19 C -0.112 4.112 20 C -0.091 4.091 21 N -0.140 5.140 22 C 0.031 3.969 23 H 0.114 0.886 24 C 0.027 3.973 25 H 0.111 0.889 26 C -0.189 4.189 27 C -0.194 4.194 28 C -0.030 4.030 29 O -0.265 6.265 30 H 0.084 0.916 31 H 0.087 0.913 32 H 0.093 0.907 33 H 0.087 0.913 34 H 0.079 0.921 35 H 0.086 0.914 36 H 0.071 0.929 37 H 0.110 0.890 38 H 0.013 0.987 39 H 0.059 0.941 40 H 0.070 0.930 41 H 0.109 0.891 42 H 0.081 0.919 43 H 0.114 0.886 44 H 0.142 0.858 45 H 0.096 0.904 46 H 0.105 0.895 47 H 0.097 0.903 48 H 0.097 0.903 49 H 0.102 0.898 50 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -4.130 17.972 4.826 19.061 hybrid contribution 0.231 -1.023 0.326 1.098 sum -3.899 16.949 5.151 18.139 Atomic orbital electron populations 1.21813 0.91308 1.03285 1.02963 1.22884 0.98149 0.96588 0.94494 1.21536 1.00925 0.93112 1.02723 1.22166 0.77243 0.82177 0.86728 1.90717 1.60748 1.74879 1.11826 1.51177 1.52156 1.24630 1.06148 1.21921 0.88516 0.81170 1.01246 1.62056 1.43882 1.05969 1.13715 1.19794 0.93540 0.84953 0.94601 1.21077 1.00652 0.96462 1.36022 0.91983 1.24902 0.95305 0.98566 0.95379 1.69936 1.20338 1.25676 1.37636 0.86586 0.81827 0.82165 0.77373 1.20836 1.21345 1.19863 1.22071 0.94888 1.01499 0.87358 1.20198 1.02585 1.05788 0.82637 1.29235 0.92744 0.92187 0.94961 1.81108 1.09653 1.10132 1.13075 1.22981 0.95249 0.88995 0.89701 0.88626 1.22919 0.92724 0.89456 0.92163 0.88940 1.23283 1.01459 0.98755 0.95373 1.23277 0.99228 0.99197 0.97682 1.23375 0.95181 0.99361 0.85047 1.88719 1.73575 1.49789 1.14437 0.91580 0.91342 0.90683 0.91337 0.92058 0.91395 0.92924 0.89018 0.98680 0.94108 0.92962 0.89145 0.91853 0.88616 0.85847 0.90449 0.89544 0.90305 0.90312 0.89765 0.92802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.24 7.59 37.16 0.28 -0.95 16 2 C -0.12 -1.23 1.37 -154.92 -0.21 -1.44 16 3 C -0.13 -1.01 9.13 37.16 0.34 -0.67 16 4 C 0.53 7.99 8.17 -10.10 -0.08 7.91 16 5 O -0.51 -9.48 17.41 5.56 0.10 -9.38 16 6 N -0.61 -8.80 3.38 -173.74 -0.59 -9.39 16 7 C 0.28 4.57 6.48 -63.32 -0.41 4.16 16 8 N -0.53 -10.10 4.82 -239.98 -1.16 -11.25 16 9 C 0.20 4.45 4.32 -4.97 -0.02 4.42 16 10 C -0.50 -12.92 8.61 -34.44 -0.30 -13.21 16 11 H 0.06 1.61 6.75 -52.49 -0.35 1.26 16 12 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 13 N -0.90 -24.96 13.29 55.43 0.74 -24.22 16 14 Si 0.89 20.94 29.54 -169.99 -5.02 15.92 16 15 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 16 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 17 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 18 C 0.07 1.32 5.03 -3.82 -0.02 1.30 16 19 C -0.07 -1.17 4.99 -29.52 -0.15 -1.32 16 20 C 0.23 4.10 15.43 -20.76 -0.32 3.78 16 21 N -0.46 -9.24 18.54 42.15 0.78 -8.46 16 22 C 0.13 1.54 3.72 -67.19 -0.25 1.29 16 23 H 0.10 0.97 8.01 -51.93 -0.42 0.55 16 24 C 0.09 1.04 2.94 -26.01 -0.08 0.96 16 25 H 0.09 1.31 6.72 -51.93 -0.35 0.97 16 26 C -0.15 -1.22 5.03 -24.78 -0.12 -1.35 16 27 C -0.16 -1.33 7.16 -24.48 -0.18 -1.51 16 28 C 0.05 0.53 7.78 38.18 0.30 0.83 16 29 O -0.35 -5.24 11.02 -35.23 -0.39 -5.63 16 30 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.07 0.72 6.62 -51.93 -0.34 0.38 16 32 H 0.07 0.49 5.67 -51.93 -0.29 0.20 16 33 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.06 0.52 8.08 -51.92 -0.42 0.10 16 35 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.05 0.82 5.74 -51.93 -0.30 0.52 16 37 H 0.09 1.49 7.62 -51.93 -0.40 1.10 16 38 H 0.00 -0.10 6.19 -51.93 -0.32 -0.42 16 39 H 0.04 1.03 7.86 -51.93 -0.41 0.62 16 40 H 0.26 6.97 8.31 -40.82 -0.34 6.64 16 41 H 0.09 1.80 6.65 -51.93 -0.35 1.45 16 42 H 0.06 1.19 6.98 -51.93 -0.36 0.82 16 43 H 0.10 1.43 6.06 -51.93 -0.31 1.11 16 44 H 0.12 2.17 6.58 -51.93 -0.34 1.83 16 45 H 0.08 0.51 7.85 -51.93 -0.41 0.10 16 46 H 0.09 0.59 6.38 -51.93 -0.33 0.26 16 47 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 48 H 0.08 0.51 8.14 -51.92 -0.42 0.09 16 49 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 50 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 LS Contribution 397.56 15.07 5.99 5.99 Total: -1.00 -31.81 397.56 -8.66 -40.47 By element: Atomic # 1 Polarization: 8.04 SS G_CDS: -7.80 Total: 0.24 kcal Atomic # 6 Polarization: 7.03 SS G_CDS: -1.31 Total: 5.71 kcal Atomic # 7 Polarization: -53.09 SS G_CDS: -0.23 Total: -53.32 kcal Atomic # 8 Polarization: -14.72 SS G_CDS: -0.29 Total: -15.02 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -31.81 -8.66 -40.47 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000811727238.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.563 kcal (2) G-P(sol) polarization free energy of solvation -31.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.660 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.467 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds