Wall clock time and date at job start Tue Mar 31 2020 18:57:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 112.90609 * 2 1 4 4 C 1.51513 * 113.69443 * 228.56252 * 2 1 3 5 5 O 1.21278 * 134.17144 * 65.57789 * 4 2 1 6 6 N 1.36120 * 91.53941 * 245.57832 * 4 2 1 7 7 C 1.46496 * 132.37539 * 179.97438 * 6 4 2 8 8 N 1.46900 * 109.47368 * 273.82816 * 7 6 4 9 9 C 1.46902 * 110.99913 * 209.15652 * 8 7 6 10 10 C 1.50700 * 109.46628 * 172.58320 * 9 8 7 11 11 H 1.07996 * 120.00346 * 4.52975 * 10 9 8 12 12 C 1.37879 * 119.99598 * 184.52168 * 10 9 8 13 13 N 1.31510 * 120.00182 * 0.02562 * 12 10 9 14 14 Si 1.86804 * 119.99947 * 180.02562 * 12 10 9 15 15 H 1.48498 * 109.47210 * 90.00024 * 14 12 10 16 16 H 1.48498 * 109.47005 * 210.00316 * 14 12 10 17 17 H 1.48502 * 109.47138 * 329.99917 * 14 12 10 18 18 C 1.46906 * 110.99777 * 85.20605 * 8 7 6 19 19 C 1.53001 * 109.46939 * 65.53251 * 18 8 7 20 20 C 1.47201 * 109.46938 * 184.85286 * 19 18 8 21 21 N 7.17128 * 100.76768 * 224.87079 * 2 1 3 22 22 C 1.47382 * 95.24281 * 359.94377 * 6 4 2 23 23 H 1.09005 * 113.70765 * 245.64998 * 22 6 4 24 24 C 1.53000 * 113.70976 * 114.45544 * 22 6 4 25 25 H 1.09004 * 109.82130 * 316.18685 * 24 22 6 26 26 C 1.54382 * 109.83429 * 195.20564 * 24 22 6 27 27 C 1.55305 * 102.25164 * 219.12977 * 26 24 22 28 28 C 1.54945 * 100.94419 * 34.13324 * 27 26 24 29 29 O 1.43242 * 109.83071 * 77.06951 * 24 22 6 30 30 H 1.09000 * 109.46970 * 58.29556 * 1 2 3 31 31 H 1.09000 * 109.47261 * 178.28946 * 1 2 3 32 32 H 1.09002 * 109.47593 * 298.29196 * 1 2 3 33 33 H 1.08997 * 109.47442 * 69.66789 * 3 2 1 34 34 H 1.09007 * 109.47385 * 189.66895 * 3 2 1 35 35 H 1.08999 * 109.47116 * 309.66481 * 3 2 1 36 36 H 1.09007 * 109.47052 * 33.82899 * 7 6 4 37 37 H 1.09001 * 109.47186 * 153.82762 * 7 6 4 38 38 H 1.08994 * 109.47171 * 292.58372 * 9 8 7 39 39 H 1.08997 * 109.46909 * 52.58867 * 9 8 7 40 40 H 0.97007 * 120.00074 * 179.97438 * 13 12 10 41 41 H 1.08994 * 109.46762 * 185.52905 * 18 8 7 42 42 H 1.09000 * 109.47165 * 305.53682 * 18 8 7 43 43 H 1.08992 * 109.47578 * 304.85399 * 19 18 8 44 44 H 1.09004 * 109.47176 * 64.86061 * 19 18 8 45 45 H 1.08994 * 110.84761 * 337.31751 * 26 24 22 46 46 H 1.08998 * 110.84729 * 100.93877 * 26 24 22 47 47 H 1.08998 * 111.12746 * 276.21224 * 27 26 24 48 48 H 1.09007 * 111.16057 * 152.06969 * 27 26 24 49 49 H 1.09000 * 110.30937 * 204.64197 * 28 27 26 50 50 H 1.09004 * 110.39156 * 82.51356 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1255 1.4093 0.0000 4 6 2.1388 -0.9182 -1.0401 5 8 2.1491 -0.9322 -2.2528 6 7 2.6687 -1.7196 -0.0758 7 6 3.4764 -2.9401 -0.1401 8 7 2.5917 -4.1072 -0.2545 9 6 3.2089 -5.2966 0.3477 10 6 2.2075 -6.4223 0.3757 11 1 1.2370 -6.2933 -0.0802 12 6 2.5303 -7.6172 0.9834 13 7 3.7119 -7.7742 1.5389 14 14 1.2893 -9.0130 1.0175 15 1 1.4672 -9.8631 -0.1870 16 1 1.5000 -9.8328 2.2376 17 1 -0.0858 -8.4525 1.0292 18 6 2.2268 -4.3559 -1.6556 19 6 3.4757 -4.7530 -2.4451 20 6 3.1327 -4.8888 -3.8702 21 7 2.8698 -4.9928 -4.9703 22 6 2.1477 -0.9315 1.0554 23 1 2.9254 -0.4592 1.6556 24 6 1.1120 -1.6772 1.8994 25 1 0.4088 -2.1962 1.2480 26 6 0.3546 -0.6791 2.8014 27 6 0.2071 -1.4777 4.1252 28 6 1.5291 -2.2858 4.1302 29 8 1.7694 -2.6202 2.7540 30 1 -0.3633 0.5401 -0.8743 31 1 -0.3634 -1.0272 -0.0307 32 1 -0.3634 0.4871 0.9049 33 1 1.9380 1.8830 0.9636 34 1 3.2001 1.3497 -0.1726 35 1 1.6627 1.9993 -0.7911 36 1 4.1334 -2.8956 -1.0088 37 1 4.0768 -3.0266 0.7655 38 1 4.0748 -5.5951 -0.2430 39 1 3.5250 -5.0661 1.3651 40 1 3.9390 -8.6147 1.9668 41 1 1.4953 -5.1625 -1.7028 42 1 1.7979 -3.4507 -2.0855 43 1 4.2399 -3.9849 -2.3270 44 1 3.8552 -5.7038 -2.0707 45 1 0.9421 0.2255 2.9576 46 1 -0.6225 -0.4408 2.3812 47 1 -0.6580 -2.1399 4.0903 48 1 0.1522 -0.8089 4.9842 49 1 1.4164 -3.1919 4.7255 50 1 2.3450 -1.6769 4.5197 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000811727238.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:57:54 Heat of formation + Delta-G solvation = -32.766790 kcal Electronic energy + Delta-G solvation = -31145.332660 eV Core-core repulsion = 27173.291146 eV Total energy + Delta-G solvation = -3972.041514 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 3.35 seconds Orbital eigenvalues (eV) -42.31013 -39.86508 -39.19079 -37.66970 -37.36987 -34.77907 -33.97968 -32.69105 -31.73679 -30.72737 -29.47448 -28.20456 -27.27130 -25.77440 -25.18628 -23.12243 -22.49416 -21.99671 -21.29050 -19.03804 -18.68821 -18.33177 -17.88938 -17.60186 -17.21540 -16.98440 -16.74354 -16.36583 -16.06407 -15.78939 -15.28002 -15.04718 -14.93390 -14.66465 -14.57043 -14.21589 -14.13285 -13.78591 -13.65982 -13.52909 -13.38582 -13.16535 -13.08468 -13.01617 -12.95109 -12.90471 -12.62712 -12.50909 -12.35039 -12.14297 -12.04169 -11.91101 -11.81322 -11.73114 -11.69229 -11.51742 -11.25382 -10.57392 -10.53567 -10.38620 -9.72056 -8.95899 -8.11634 -6.17124 1.42593 1.44584 1.48675 1.54137 1.65558 1.70667 2.02658 2.45625 2.91505 2.92022 3.00828 3.22817 3.46024 3.64914 3.72626 3.78434 3.97195 4.07433 4.09393 4.12774 4.16474 4.23807 4.33614 4.36924 4.46440 4.57266 4.59047 4.79405 4.81562 4.85829 4.90925 4.95304 4.98153 5.01534 5.06453 5.06933 5.08456 5.20513 5.30263 5.31705 5.35584 5.42298 5.43981 5.64788 5.73174 5.76476 6.12606 6.34709 6.40053 6.50019 6.63351 6.95854 7.30082 7.50764 8.98194 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.008900 B = 0.005124 C = 0.003578 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3145.229806 B = 5463.605280 C = 7823.031284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.094 4.094 3 C -0.123 4.123 4 C 0.515 3.485 5 O -0.553 6.553 6 N -0.613 5.613 7 C 0.283 3.717 8 N -0.536 5.536 9 C 0.216 3.784 10 C -0.510 4.510 11 H 0.055 0.945 12 C 0.015 3.985 13 N -0.926 5.926 14 Si 0.948 3.052 15 H -0.279 1.279 16 H -0.285 1.285 17 H -0.272 1.272 18 C 0.082 3.918 19 C -0.058 4.058 20 C 0.243 3.757 21 N -0.490 5.490 22 C 0.136 3.864 23 H 0.117 0.883 24 C 0.084 3.916 25 H 0.061 0.939 26 C -0.140 4.140 27 C -0.148 4.148 28 C 0.037 3.963 29 O -0.391 6.391 30 H 0.068 0.932 31 H 0.047 0.953 32 H 0.110 0.890 33 H 0.103 0.897 34 H 0.054 0.946 35 H 0.071 0.929 36 H 0.060 0.940 37 H 0.089 0.911 38 H -0.008 1.008 39 H 0.013 0.987 40 H 0.261 0.739 41 H 0.071 0.929 42 H 0.060 0.940 43 H 0.118 0.882 44 H 0.118 0.882 45 H 0.106 0.894 46 H 0.103 0.897 47 H 0.068 0.932 48 H 0.108 0.892 49 H 0.068 0.932 50 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.551 21.077 8.112 23.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.098 4.098 3 C -0.180 4.180 4 C 0.303 3.697 5 O -0.429 6.429 6 N -0.348 5.348 7 C 0.072 3.928 8 N -0.260 5.260 9 C 0.090 3.910 10 C -0.548 4.548 11 H 0.073 0.927 12 C -0.184 4.184 13 N -0.566 5.566 14 Si 0.774 3.226 15 H -0.205 1.205 16 H -0.210 1.210 17 H -0.197 1.197 18 C -0.048 4.048 19 C -0.099 4.099 20 C -0.074 4.074 21 N -0.168 5.168 22 C 0.034 3.966 23 H 0.135 0.865 24 C 0.025 3.975 25 H 0.079 0.921 26 C -0.177 4.177 27 C -0.185 4.185 28 C -0.039 4.039 29 O -0.310 6.310 30 H 0.087 0.913 31 H 0.066 0.934 32 H 0.128 0.872 33 H 0.122 0.878 34 H 0.074 0.926 35 H 0.090 0.910 36 H 0.078 0.922 37 H 0.107 0.893 38 H 0.009 0.991 39 H 0.031 0.969 40 H 0.070 0.930 41 H 0.090 0.910 42 H 0.078 0.922 43 H 0.136 0.864 44 H 0.136 0.864 45 H 0.124 0.876 46 H 0.122 0.878 47 H 0.087 0.913 48 H 0.126 0.874 49 H 0.086 0.914 50 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -4.993 20.525 6.121 21.993 hybrid contribution 0.499 -1.800 -0.043 1.868 sum -4.494 18.725 6.078 20.194 Atomic orbital electron populations 1.21874 0.90016 1.02504 1.04904 1.22848 0.98931 0.97069 0.90938 1.21603 1.00347 0.91165 1.04919 1.23130 0.76886 0.83035 0.86675 1.90677 1.62254 1.76148 1.13862 1.51386 1.51806 1.23827 1.07769 1.21843 0.88555 0.80935 1.01429 1.61928 1.44579 1.05558 1.13962 1.19377 0.92756 0.85627 0.93248 1.21351 1.00776 0.97405 1.35300 0.92725 1.25566 0.96760 1.00715 0.95320 1.70029 1.21769 1.26237 1.38605 0.85710 0.79854 0.79625 0.77361 1.20496 1.21037 1.19693 1.21872 0.95133 1.00585 0.87228 1.20113 1.02222 1.06124 0.81455 1.29348 0.91886 0.91257 0.94926 1.81118 1.10561 1.11168 1.13984 1.23238 0.95634 0.88500 0.89270 0.86505 1.22924 0.92499 0.89861 0.92232 0.92102 1.23303 1.02147 0.98442 0.93849 1.23245 0.97025 0.99120 0.99149 1.23553 0.97536 0.99512 0.83340 1.88672 1.74247 1.51657 1.16462 0.91279 0.93429 0.87166 0.87824 0.92650 0.90962 0.92202 0.89269 0.99076 0.96874 0.92961 0.91044 0.92150 0.86402 0.86399 0.87562 0.87820 0.91329 0.87363 0.91404 0.91129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.12 7.59 71.98 0.55 -1.58 16 2 C -0.09 -1.76 1.37 -52.41 -0.07 -1.83 16 3 C -0.12 -1.52 9.13 71.98 0.66 -0.87 16 4 C 0.52 15.28 8.17 87.62 0.72 16.00 16 5 O -0.55 -20.82 17.41 -3.02 -0.05 -20.88 16 6 N -0.61 -17.66 3.38 -821.22 -2.78 -20.44 16 7 C 0.28 9.31 6.48 170.81 1.11 10.42 16 8 N -0.54 -20.94 4.82 -913.15 -4.40 -25.34 16 9 C 0.22 10.11 4.32 85.56 0.37 10.48 16 10 C -0.51 -26.79 8.61 25.60 0.22 -26.56 16 11 H 0.05 2.91 6.75 -2.91 -0.02 2.89 16 12 C 0.02 0.81 5.46 84.66 0.46 1.27 16 13 N -0.93 -52.40 13.29 21.45 0.28 -52.12 16 14 Si 0.95 43.43 29.54 68.60 2.03 45.45 16 15 H -0.28 -12.58 7.11 99.48 0.71 -11.88 16 16 H -0.28 -12.84 7.11 99.48 0.71 -12.14 16 17 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 18 C 0.08 3.08 5.03 86.30 0.43 3.52 16 19 C -0.06 -1.93 4.99 28.79 0.14 -1.78 16 20 C 0.24 8.83 15.43 89.44 1.38 10.21 16 21 N -0.49 -19.65 18.54 20.00 0.37 -19.28 16 22 C 0.14 2.87 3.72 44.99 0.17 3.04 16 23 H 0.12 2.00 8.01 -2.38 -0.02 1.99 16 24 C 0.08 1.91 2.94 31.06 0.09 2.00 16 25 H 0.06 1.76 6.72 -2.39 -0.02 1.74 16 26 C -0.14 -1.77 5.03 31.85 0.16 -1.61 16 27 C -0.15 -2.13 7.16 32.05 0.23 -1.91 16 28 C 0.04 0.80 7.78 72.65 0.56 1.36 16 29 O -0.39 -11.87 11.02 -148.98 -1.64 -13.51 16 30 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 31 H 0.05 0.96 6.62 -2.39 -0.02 0.95 16 32 H 0.11 0.95 5.67 -2.39 -0.01 0.93 16 33 H 0.10 0.62 8.14 -2.39 -0.02 0.60 16 34 H 0.05 0.78 8.08 -2.38 -0.02 0.76 16 35 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 36 H 0.06 1.86 5.74 -2.38 -0.01 1.85 16 37 H 0.09 2.97 7.62 -2.39 -0.02 2.95 16 38 H -0.01 -0.39 6.19 -2.39 -0.01 -0.41 16 39 H 0.01 0.69 7.86 -2.39 -0.02 0.67 16 40 H 0.26 14.16 8.31 -92.70 -0.77 13.39 16 41 H 0.07 2.94 6.65 -2.39 -0.02 2.93 16 42 H 0.06 2.32 6.98 -2.39 -0.02 2.31 16 43 H 0.12 3.46 6.06 -2.39 -0.01 3.45 16 44 H 0.12 4.19 6.58 -2.38 -0.02 4.18 16 45 H 0.11 0.79 7.85 -2.39 -0.02 0.77 16 46 H 0.10 0.99 6.38 -2.39 -0.02 0.97 16 47 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 48 H 0.11 0.96 8.14 -2.38 -0.02 0.94 16 49 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 50 H 0.07 1.26 8.14 -2.38 -0.02 1.24 16 Total: -1.00 -71.76 397.56 1.94 -69.82 By element: Atomic # 1 Polarization: 13.17 SS G_CDS: 0.95 Total: 14.12 kcal Atomic # 6 Polarization: 14.99 SS G_CDS: 7.18 Total: 22.17 kcal Atomic # 7 Polarization: -110.65 SS G_CDS: -6.52 Total: -117.17 kcal Atomic # 8 Polarization: -32.69 SS G_CDS: -1.69 Total: -34.39 kcal Atomic # 14 Polarization: 43.43 SS G_CDS: 2.03 Total: 45.45 kcal Total: -71.76 1.94 -69.82 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000811727238.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.056 kcal (2) G-P(sol) polarization free energy of solvation -71.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.823 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.36 seconds