Wall clock time and date at job start Tue Mar 31 2020 20:00:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.50768 * 2 1 4 4 C 1.53006 * 117.49886 * 125.35477 * 3 2 1 5 5 C 1.53006 * 117.50028 * 56.69601 * 3 2 1 6 6 C 1.53103 * 109.50841 * 120.12954 * 2 1 3 7 7 O 1.43018 * 109.25694 * 63.08527 * 6 2 1 8 8 C 1.43014 * 113.73773 * 58.67028 * 7 6 2 9 9 C 1.53093 * 109.25925 * 301.33118 * 8 7 6 10 10 N 1.47015 * 109.51121 * 239.91233 * 2 1 3 11 11 C 1.46895 * 110.99770 * 62.45340 * 10 2 1 12 12 C 1.50705 * 109.47175 * 164.00816 * 11 10 2 13 13 O 1.21279 * 119.99733 * 0.02562 * 12 11 10 14 14 N 1.34774 * 120.00298 * 180.02562 * 12 11 10 15 15 C 1.46497 * 120.00060 * 179.72320 * 14 12 11 16 16 C 1.50695 * 109.47388 * 270.27760 * 15 14 12 17 17 H 1.08001 * 119.99975 * 359.97438 * 16 15 14 18 18 C 1.37881 * 120.00293 * 180.02562 * 16 15 14 19 19 N 1.31510 * 119.99926 * 179.97438 * 18 16 15 20 20 Si 1.86799 * 119.99686 * 359.97438 * 18 16 15 21 21 H 1.48497 * 109.47265 * 90.00044 * 20 18 16 22 22 H 1.48498 * 109.46846 * 210.00353 * 20 18 16 23 23 H 1.48503 * 109.46988 * 329.99835 * 20 18 16 24 24 C 1.46498 * 119.99763 * 0.02562 * 14 12 11 25 25 C 1.53008 * 109.46773 * 269.72374 * 24 14 12 26 26 C 1.47208 * 109.46718 * 180.02562 * 25 24 14 27 27 N 7.06307 * 60.12657 * 290.81794 * 2 1 3 28 28 H 1.08995 * 109.46986 * 180.08655 * 1 2 3 29 29 H 1.08998 * 109.47098 * 300.08898 * 1 2 3 30 30 H 1.09000 * 109.46813 * 60.08866 * 1 2 3 31 31 H 1.09004 * 115.54988 * 271.02171 * 3 2 1 32 32 H 1.08996 * 117.49792 * 359.97438 * 4 3 2 33 33 H 1.09004 * 117.49629 * 145.02205 * 4 3 2 34 34 H 1.08998 * 117.49509 * 214.98035 * 5 3 2 35 35 H 1.09003 * 117.49533 * 359.97438 * 5 3 2 36 36 H 1.08997 * 109.50678 * 183.02100 * 6 2 1 37 37 H 1.08998 * 109.50247 * 303.15401 * 6 2 1 38 38 H 1.09004 * 109.50299 * 61.26817 * 8 7 6 39 39 H 1.09002 * 109.50455 * 181.35090 * 8 7 6 40 40 H 1.09004 * 109.50678 * 296.91102 * 9 8 7 41 41 H 1.08999 * 109.50545 * 176.78375 * 9 8 7 42 42 H 1.09003 * 109.46980 * 44.00996 * 11 10 2 43 43 H 1.08998 * 109.47703 * 284.00785 * 11 10 2 44 44 H 1.08999 * 109.47022 * 30.27645 * 15 14 12 45 45 H 1.08998 * 109.46956 * 150.27521 * 15 14 12 46 46 H 0.97001 * 119.99904 * 179.97438 * 19 18 16 47 47 H 1.08997 * 109.47818 * 29.72011 * 24 14 12 48 48 H 1.09000 * 109.47515 * 149.72429 * 24 14 12 49 49 H 1.09003 * 109.46730 * 299.99623 * 25 24 14 50 50 H 1.08996 * 109.47308 * 60.00217 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0409 1.4422 0.0000 4 6 3.0170 1.8458 1.1069 5 6 1.5744 2.3570 1.1343 6 6 2.0412 -0.7244 1.2482 7 8 1.6227 -2.0913 1.2049 8 6 2.0837 -2.7983 0.0504 9 6 1.5729 -2.0949 -1.2098 10 7 2.0210 -0.6947 -1.1990 11 6 1.5990 0.0025 -2.4212 12 6 2.4210 -0.4845 -3.5866 13 8 3.2741 -1.3295 -3.4159 14 7 2.2083 0.0190 -4.8185 15 6 3.0115 -0.4500 -5.9503 16 6 4.2440 0.4072 -6.0811 17 1 4.4119 1.2204 -5.3905 18 6 5.1567 0.1541 -7.0831 19 7 6.2320 0.9026 -7.1975 20 14 4.8659 -1.2519 -8.2780 21 1 4.0944 -0.7571 -9.4464 22 1 6.1718 -1.7884 -8.7383 23 1 4.1002 -2.3281 -7.5991 24 6 1.1782 1.0401 -5.0246 25 6 -0.1525 0.3622 -5.3573 26 6 -1.1874 1.3883 -5.5650 27 7 -1.9881 2.1767 -5.7247 28 1 -0.3633 -1.0276 0.0016 29 1 -0.3633 0.5152 0.8892 30 1 -0.3633 0.5125 -0.8908 31 1 2.1813 1.8912 -0.9833 32 1 3.2949 1.0841 1.8353 33 1 3.7994 2.5608 0.8519 34 1 1.4083 3.4078 0.8973 35 1 0.9031 1.9314 1.8803 36 1 3.1299 -0.6778 1.2757 37 1 1.6331 -0.2468 2.1389 38 1 3.1736 -2.8120 0.0432 39 1 1.7070 -3.8208 0.0753 40 1 0.4836 -2.1284 -1.2292 41 1 1.9689 -2.5969 -2.0926 42 1 1.7454 1.0754 -2.2964 43 1 0.5449 -0.2008 -2.6100 44 1 3.3057 -1.4860 -5.7825 45 1 2.4235 -0.3830 -6.8656 46 1 6.8743 0.7243 -7.9022 47 1 1.0669 1.6326 -4.1165 48 1 1.4708 1.6903 -5.8490 49 1 -0.0413 -0.2302 -6.2656 50 1 -0.4452 -0.2880 -4.5329 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000934481817.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:00:37 Heat of formation + Delta-G solvation = 2.059346 kcal Electronic energy + Delta-G solvation = -30766.280757 eV Core-core repulsion = 26795.749417 eV Total energy + Delta-G solvation = -3970.531340 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -40.86764 -39.15447 -37.30035 -36.98033 -35.68216 -35.11105 -32.82337 -31.52835 -31.04017 -29.87452 -28.03892 -27.17209 -25.08288 -24.60186 -24.04068 -22.38335 -22.11346 -21.41461 -18.82995 -18.31253 -17.80806 -17.43915 -16.86405 -16.52145 -16.26337 -15.74506 -15.36355 -15.31922 -14.92236 -14.72781 -14.51310 -14.34330 -13.97096 -13.70140 -13.63614 -13.45176 -12.91810 -12.90804 -12.61145 -12.54211 -12.44356 -12.28773 -12.11219 -11.89416 -11.71365 -11.68359 -11.66437 -11.24014 -11.12630 -11.10392 -10.86350 -10.59082 -10.48869 -10.37559 -10.25448 -10.16870 -9.64183 -9.58121 -9.08463 -8.63409 -8.24956 -7.90057 -6.12346 -4.11756 2.63857 2.72208 3.17303 3.23229 3.28633 3.34069 3.35266 3.60598 3.73628 3.86524 4.14344 4.35487 4.44501 4.61018 4.71930 4.80251 4.81886 4.90513 4.97891 5.00629 5.09046 5.10463 5.14353 5.22179 5.24479 5.29321 5.37985 5.40559 5.46258 5.49814 5.61545 5.62107 5.66669 5.69304 5.79442 5.83917 5.91924 5.96933 5.97511 6.02772 6.09968 6.51713 6.81967 6.92289 6.97101 7.09601 7.20032 7.47834 7.55375 8.08376 8.41680 8.86556 8.92880 9.47267 11.01015 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.010180 B = 0.003894 C = 0.003409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2749.827326 B = 7188.652087 C = 8212.127513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.107 3.893 3 C -0.143 4.143 4 C -0.177 4.177 5 C -0.178 4.178 6 C 0.075 3.925 7 O -0.386 6.386 8 C 0.065 3.935 9 C 0.017 3.983 10 N -0.501 5.501 11 C 0.029 3.971 12 C 0.512 3.488 13 O -0.512 6.512 14 N -0.595 5.595 15 C 0.217 3.783 16 C -0.530 4.530 17 H 0.075 0.925 18 C 0.073 3.927 19 N -0.896 5.896 20 Si 0.873 3.127 21 H -0.276 1.276 22 H -0.284 1.284 23 H -0.263 1.263 24 C 0.117 3.883 25 C -0.051 4.051 26 C 0.215 3.785 27 N -0.441 5.441 28 H 0.065 0.935 29 H 0.063 0.937 30 H 0.057 0.943 31 H 0.113 0.887 32 H 0.099 0.901 33 H 0.096 0.904 34 H 0.095 0.905 35 H 0.093 0.907 36 H 0.065 0.935 37 H 0.093 0.907 38 H 0.063 0.937 39 H 0.096 0.904 40 H 0.040 0.960 41 H 0.101 0.899 42 H 0.105 0.895 43 H 0.060 0.940 44 H 0.043 0.957 45 H 0.027 0.973 46 H 0.265 0.735 47 H 0.076 0.924 48 H 0.097 0.903 49 H 0.116 0.884 50 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.961 -2.499 14.920 19.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.017 3.983 3 C -0.161 4.161 4 C -0.214 4.214 5 C -0.215 4.215 6 C -0.002 4.002 7 O -0.305 6.305 8 C -0.012 4.012 9 C -0.111 4.111 10 N -0.225 5.225 11 C -0.102 4.102 12 C 0.298 3.702 13 O -0.386 6.386 14 N -0.328 5.328 15 C 0.096 3.904 16 C -0.568 4.568 17 H 0.093 0.907 18 C -0.129 4.129 19 N -0.534 5.534 20 Si 0.700 3.300 21 H -0.201 1.201 22 H -0.210 1.210 23 H -0.188 1.188 24 C -0.009 4.009 25 C -0.092 4.092 26 C -0.103 4.103 27 N -0.118 5.118 28 H 0.084 0.916 29 H 0.082 0.918 30 H 0.076 0.924 31 H 0.131 0.869 32 H 0.117 0.883 33 H 0.115 0.885 34 H 0.113 0.887 35 H 0.112 0.888 36 H 0.083 0.917 37 H 0.111 0.889 38 H 0.082 0.918 39 H 0.114 0.886 40 H 0.059 0.941 41 H 0.119 0.881 42 H 0.123 0.877 43 H 0.077 0.923 44 H 0.061 0.939 45 H 0.044 0.956 46 H 0.075 0.925 47 H 0.094 0.906 48 H 0.115 0.885 49 H 0.134 0.866 50 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -13.088 -1.877 14.809 19.853 hybrid contribution -0.398 -0.621 -1.107 1.330 sum -13.486 -2.498 13.702 19.387 Atomic orbital electron populations 1.22382 0.95921 1.02530 1.02438 1.21158 0.93118 0.92284 0.91752 1.22301 1.04334 0.93873 0.95583 1.23110 0.93000 1.03642 1.01658 1.23016 0.97859 0.99450 1.01221 1.22814 0.99534 0.81770 0.96107 1.87944 1.76132 1.22851 1.43523 1.22665 0.99681 0.95133 0.83747 1.22913 0.98081 0.89324 1.00794 1.61936 1.59080 1.01516 0.99944 1.22206 0.97320 1.00620 0.90007 1.20192 0.84193 0.82632 0.83226 1.90672 1.32788 1.31807 1.83331 1.47891 1.35588 1.40205 1.09089 1.19694 0.90870 0.96875 0.82917 1.21304 1.04256 1.16078 1.15211 0.90689 1.24853 0.94765 0.95969 0.97334 1.69890 1.11108 1.39161 1.33237 0.86897 0.78210 0.83340 0.81570 1.20134 1.20992 1.18784 1.21316 0.85107 0.90925 1.03578 1.19900 0.90169 0.93529 1.05629 1.29013 0.93995 0.94242 0.93049 1.81177 1.11043 1.10470 1.09155 0.91630 0.91838 0.92392 0.86928 0.88293 0.88546 0.88674 0.88828 0.91698 0.88854 0.91842 0.88593 0.94143 0.88062 0.87732 0.92256 0.93879 0.95557 0.92536 0.90578 0.88478 0.86621 0.87721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.63 7.50 37.16 0.28 -1.35 16 2 C 0.11 1.14 0.54 -131.49 -0.07 1.07 16 3 C -0.14 -1.46 5.07 -90.61 -0.46 -1.91 16 4 C -0.18 -1.66 9.53 -26.69 -0.25 -1.91 16 5 C -0.18 -1.46 9.42 -26.69 -0.25 -1.71 16 6 C 0.07 0.79 4.27 37.21 0.16 0.95 16 7 O -0.39 -4.59 10.28 -35.23 -0.36 -4.95 16 8 C 0.06 0.74 7.01 37.21 0.26 1.00 16 9 C 0.02 0.20 4.91 -3.71 -0.02 0.19 16 10 N -0.50 -6.54 4.11 -220.10 -0.91 -7.44 16 11 C 0.03 0.37 3.04 -4.98 -0.02 0.36 16 12 C 0.51 8.91 7.40 -10.98 -0.08 8.83 16 13 O -0.51 -11.20 14.44 5.56 0.08 -11.12 16 14 N -0.60 -10.18 2.46 -175.06 -0.43 -10.61 16 15 C 0.22 4.68 4.23 -5.20 -0.02 4.65 16 16 C -0.53 -14.20 9.94 -34.44 -0.34 -14.54 16 17 H 0.08 2.23 8.06 -52.49 -0.42 1.81 16 18 C 0.07 2.04 5.47 -17.82 -0.10 1.94 16 19 N -0.90 -26.77 13.96 55.43 0.77 -26.00 16 20 Si 0.87 20.43 27.47 -169.99 -4.67 15.76 16 21 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 22 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 23 H -0.26 -5.91 6.54 56.52 0.37 -5.54 16 24 C 0.12 1.46 5.17 -4.04 -0.02 1.43 16 25 C -0.05 -0.47 6.03 -29.51 -0.18 -0.65 16 26 C 0.22 2.42 15.43 -20.79 -0.32 2.10 16 27 N -0.44 -6.18 18.53 42.11 0.78 -5.40 16 28 H 0.06 0.66 6.06 -51.93 -0.31 0.34 16 29 H 0.06 0.53 7.09 -51.93 -0.37 0.16 16 30 H 0.06 0.52 6.84 -51.93 -0.36 0.17 16 31 H 0.11 1.26 5.80 -51.93 -0.30 0.96 16 32 H 0.10 0.86 5.82 -51.93 -0.30 0.56 16 33 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 34 H 0.09 0.73 8.14 -51.93 -0.42 0.30 16 35 H 0.09 0.68 7.12 -51.93 -0.37 0.31 16 36 H 0.06 0.74 6.93 -51.93 -0.36 0.38 16 37 H 0.09 0.83 7.42 -51.93 -0.39 0.44 16 38 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 40 H 0.04 0.45 6.39 -51.93 -0.33 0.12 16 41 H 0.10 1.45 6.43 -51.93 -0.33 1.11 16 42 H 0.10 1.25 4.69 -51.93 -0.24 1.00 16 43 H 0.06 0.61 6.25 -51.93 -0.32 0.29 16 44 H 0.04 1.02 6.48 -51.93 -0.34 0.68 16 45 H 0.03 0.52 7.50 -51.93 -0.39 0.13 16 46 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 47 H 0.08 0.80 6.43 -51.93 -0.33 0.46 16 48 H 0.10 1.31 8.07 -51.93 -0.42 0.89 16 49 H 0.12 1.02 8.14 -51.93 -0.42 0.59 16 50 H 0.10 0.78 7.25 -51.93 -0.38 0.40 16 LS Contribution 386.59 15.07 5.83 5.83 Total: -1.00 -33.74 386.59 -7.89 -41.62 By element: Atomic # 1 Polarization: 9.41 SS G_CDS: -7.55 Total: 1.86 kcal Atomic # 6 Polarization: 1.88 SS G_CDS: -1.43 Total: 0.45 kcal Atomic # 7 Polarization: -49.67 SS G_CDS: 0.22 Total: -49.45 kcal Atomic # 8 Polarization: -15.79 SS G_CDS: -0.28 Total: -16.07 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -4.67 Total: 15.76 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -33.74 -7.89 -41.62 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000934481817.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.684 kcal (2) G-P(sol) polarization free energy of solvation -33.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.624 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds