Wall clock time and date at job start Tue Mar 31 2020 20:00:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52994 * 109.50766 * 2 1 4 4 C 1.53001 * 117.50235 * 3.70076 * 3 2 1 5 5 C 1.52998 * 60.00071 * 252.51671 * 4 3 2 6 6 C 1.53100 * 109.50483 * 239.86228 * 2 1 3 7 7 O 1.43014 * 109.25964 * 296.91504 * 6 2 1 8 8 C 1.43018 * 113.73901 * 301.33200 * 7 6 2 9 9 C 1.53094 * 109.25762 * 58.66979 * 8 7 6 10 10 N 1.47007 * 109.26076 * 303.14842 * 9 8 7 11 11 C 1.46906 * 111.00287 * 182.39030 * 10 9 8 12 12 C 1.50702 * 109.46617 * 55.53557 * 11 10 9 13 13 O 1.21283 * 120.00149 * 7.43612 * 12 11 10 14 14 N 1.34780 * 119.99881 * 187.43887 * 12 11 10 15 15 C 1.46500 * 120.00028 * 180.02562 * 14 12 11 16 16 C 1.50698 * 109.47351 * 89.99879 * 15 14 12 17 17 H 1.08002 * 119.99515 * 359.97438 * 16 15 14 18 18 C 1.37875 * 120.00128 * 179.97438 * 16 15 14 19 19 N 1.31520 * 119.99885 * 0.02562 * 18 16 15 20 20 Si 1.86802 * 119.99930 * 179.97438 * 18 16 15 21 21 H 1.48494 * 109.47309 * 0.02562 * 20 18 16 22 22 H 1.48502 * 109.46586 * 120.00577 * 20 18 16 23 23 H 1.48499 * 109.47093 * 239.99921 * 20 18 16 24 24 C 1.46502 * 119.99669 * 359.97438 * 14 12 11 25 25 C 1.53002 * 109.47012 * 90.00308 * 24 14 12 26 26 C 1.47201 * 109.47080 * 179.97438 * 25 24 14 27 27 N 6.91374 * 56.58526 * 66.89984 * 2 1 3 28 28 H 1.09003 * 109.47066 * 299.92289 * 1 2 3 29 29 H 1.09007 * 109.47086 * 59.91578 * 1 2 3 30 30 H 1.08992 * 109.47506 * 179.91771 * 1 2 3 31 31 H 1.08997 * 115.55292 * 149.41951 * 3 2 1 32 32 H 1.08997 * 117.49608 * 0.02562 * 4 3 2 33 33 H 1.09000 * 117.49685 * 145.02668 * 4 3 2 34 34 H 1.09000 * 117.49739 * 252.50487 * 5 4 3 35 35 H 1.09005 * 117.50060 * 107.49341 * 5 4 3 36 36 H 1.08994 * 109.50181 * 56.85536 * 6 2 1 37 37 H 1.09001 * 109.49939 * 176.93683 * 6 2 1 38 38 H 1.09002 * 109.50583 * 178.60183 * 8 7 6 39 39 H 1.08997 * 109.50519 * 298.69145 * 8 7 6 40 40 H 1.09005 * 109.50615 * 183.20978 * 9 8 7 41 41 H 1.09008 * 109.51059 * 63.08686 * 9 8 7 42 42 H 1.08997 * 109.47087 * 295.53626 * 11 10 9 43 43 H 1.09004 * 109.47168 * 175.53287 * 11 10 9 44 44 H 1.09004 * 109.46512 * 210.00079 * 15 14 12 45 45 H 1.09005 * 109.46940 * 329.99585 * 15 14 12 46 46 H 0.96996 * 119.99748 * 179.97438 * 19 18 16 47 47 H 1.09003 * 109.47072 * 209.99837 * 24 14 12 48 48 H 1.08997 * 109.47353 * 330.00131 * 24 14 12 49 49 H 1.08998 * 109.46858 * 300.00165 * 25 24 14 50 50 H 1.09006 * 109.46984 * 59.99736 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0409 1.4421 0.0000 4 6 1.0003 2.5603 0.0876 5 6 1.7345 2.3000 -1.2292 6 6 2.0412 -0.7246 -1.2481 7 8 1.6226 -2.0914 -1.2046 8 6 2.0836 -2.7983 -0.0500 9 6 1.5728 -2.0948 1.2101 10 7 2.0209 -0.6947 1.1992 11 6 1.5988 0.0027 2.4213 12 6 2.1020 -0.7480 3.6272 13 8 2.8593 -1.6848 3.4859 14 7 1.7104 -0.3785 4.8628 15 6 2.2000 -1.1080 6.0351 16 6 3.4768 -0.4741 6.5242 17 1 3.8831 0.3859 6.0125 18 6 4.1261 -0.9920 7.6247 19 7 3.6315 -2.0396 8.2474 20 14 5.7091 -0.2067 8.2304 21 1 6.0519 0.9489 7.3630 22 1 5.5263 0.2609 9.6280 23 1 6.8071 -1.2053 8.1822 24 6 0.7961 0.7534 5.0335 25 6 -0.6487 0.2507 5.0041 26 6 -1.5674 1.3879 5.1762 27 7 -2.2774 2.2642 5.3082 28 1 -0.3633 0.5126 0.8907 29 1 -0.3633 0.5152 -0.8893 30 1 -0.3634 -1.0276 -0.0015 31 1 2.9959 1.6026 0.5003 32 1 -0.0483 2.2685 0.1457 33 1 1.2706 3.4567 0.6458 34 1 2.4877 3.0252 -1.5373 35 1 1.1689 1.8371 -2.0379 36 1 1.6332 -0.2470 -2.1388 37 1 3.1298 -0.6773 -1.2760 38 1 1.7062 -3.8206 -0.0744 39 1 3.1735 -2.8127 -0.0432 40 1 1.9686 -2.5968 2.0930 41 1 0.4834 -2.1282 1.2295 42 1 0.5105 0.0538 2.4531 43 1 2.0102 1.0122 2.4240 44 1 1.4501 -1.0710 6.8253 45 1 2.3907 -2.1463 5.7635 46 1 4.0885 -2.4041 9.0213 47 1 0.9927 1.2382 5.9897 48 1 0.9484 1.4686 4.2253 49 1 -0.8453 -0.2342 4.0479 50 1 -0.8010 -0.4646 5.8124 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000934481833.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:00:40 Heat of formation + Delta-G solvation = -2.691677 kcal Electronic energy + Delta-G solvation = -30853.541301 eV Core-core repulsion = 26882.803941 eV Total energy + Delta-G solvation = -3970.737359 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.85452 -39.09074 -37.43749 -36.93554 -35.55990 -34.92946 -32.91039 -31.44116 -30.87422 -29.70047 -27.72775 -27.03848 -24.97522 -24.56469 -24.03703 -22.45867 -22.39136 -21.24397 -18.80874 -18.30386 -17.66266 -17.27663 -16.52321 -16.45398 -16.04695 -15.92367 -15.37945 -15.24658 -15.09824 -14.75567 -14.56284 -14.16740 -14.05926 -13.74376 -13.52786 -13.26496 -12.95346 -12.82930 -12.55036 -12.46664 -12.30876 -12.18525 -11.97037 -11.84110 -11.70316 -11.41337 -11.30838 -11.21935 -11.05021 -11.01534 -10.86846 -10.67043 -10.57516 -10.47973 -10.24334 -10.20313 -9.70032 -9.54683 -8.90727 -8.49593 -8.23629 -7.84241 -6.11087 -4.15464 2.68408 2.76886 3.23432 3.26892 3.35207 3.36085 3.41596 3.56934 3.80527 3.83316 4.19149 4.40279 4.52724 4.62441 4.78637 4.82897 4.86855 4.92667 5.01329 5.06266 5.13449 5.16718 5.23128 5.27393 5.29014 5.32816 5.43145 5.46099 5.47438 5.59764 5.61890 5.66600 5.74053 5.76247 5.78748 5.88368 5.91462 6.00861 6.03398 6.15394 6.17862 6.80163 7.00195 7.04421 7.16944 7.32688 7.40398 7.52870 7.85323 8.14737 8.22217 8.81899 8.96494 9.50402 10.97069 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.010161 B = 0.003885 C = 0.003341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2754.993160 B = 7204.854669 C = 8379.646906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.106 3.894 3 C -0.141 4.141 4 C -0.184 4.184 5 C -0.176 4.176 6 C 0.080 3.920 7 O -0.388 6.388 8 C 0.066 3.934 9 C 0.000 4.000 10 N -0.502 5.502 11 C 0.034 3.966 12 C 0.508 3.492 13 O -0.516 6.516 14 N -0.597 5.597 15 C 0.246 3.754 16 C -0.527 4.527 17 H 0.058 0.942 18 C 0.063 3.937 19 N -0.894 5.894 20 Si 0.896 3.104 21 H -0.273 1.273 22 H -0.284 1.284 23 H -0.283 1.283 24 C 0.118 3.882 25 C -0.051 4.051 26 C 0.216 3.784 27 N -0.444 5.444 28 H 0.061 0.939 29 H 0.061 0.939 30 H 0.066 0.934 31 H 0.115 0.885 32 H 0.099 0.901 33 H 0.094 0.906 34 H 0.095 0.905 35 H 0.093 0.907 36 H 0.093 0.907 37 H 0.060 0.940 38 H 0.095 0.905 39 H 0.061 0.939 40 H 0.124 0.876 41 H 0.037 0.963 42 H 0.057 0.943 43 H 0.103 0.897 44 H 0.034 0.966 45 H 0.046 0.954 46 H 0.263 0.737 47 H 0.095 0.905 48 H 0.074 0.926 49 H 0.103 0.897 50 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.433 4.487 -17.043 19.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.016 3.984 3 C -0.159 4.159 4 C -0.221 4.221 5 C -0.213 4.213 6 C 0.003 3.997 7 O -0.306 6.306 8 C -0.011 4.011 9 C -0.127 4.127 10 N -0.227 5.227 11 C -0.097 4.097 12 C 0.294 3.706 13 O -0.391 6.391 14 N -0.329 5.329 15 C 0.127 3.873 16 C -0.566 4.566 17 H 0.077 0.923 18 C -0.139 4.139 19 N -0.533 5.533 20 Si 0.724 3.276 21 H -0.198 1.198 22 H -0.210 1.210 23 H -0.209 1.209 24 C -0.009 4.009 25 C -0.092 4.092 26 C -0.102 4.102 27 N -0.121 5.121 28 H 0.079 0.921 29 H 0.080 0.920 30 H 0.085 0.915 31 H 0.133 0.867 32 H 0.118 0.882 33 H 0.112 0.888 34 H 0.113 0.887 35 H 0.112 0.888 36 H 0.111 0.889 37 H 0.078 0.922 38 H 0.113 0.887 39 H 0.080 0.920 40 H 0.141 0.859 41 H 0.055 0.945 42 H 0.075 0.925 43 H 0.121 0.879 44 H 0.052 0.948 45 H 0.064 0.936 46 H 0.073 0.927 47 H 0.113 0.887 48 H 0.092 0.908 49 H 0.121 0.879 50 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -7.627 5.049 -16.897 19.214 hybrid contribution 0.391 0.357 0.772 0.936 sum -7.236 5.406 -16.125 18.482 Atomic orbital electron populations 1.22508 0.96468 1.02762 1.02104 1.21179 0.92922 0.92320 0.91957 1.22238 1.00680 0.90150 1.02856 1.23175 0.98163 0.99968 1.00814 1.22946 1.03627 1.03027 0.91705 1.22581 0.99420 0.81740 0.95944 1.87941 1.76119 1.22806 1.43749 1.22674 0.99473 0.95215 0.83755 1.23241 0.98173 0.89445 1.01881 1.62113 1.58811 1.01806 0.99926 1.22155 0.98929 0.99214 0.89418 1.20209 0.81717 0.84765 0.83919 1.90602 1.34476 1.29015 1.85049 1.48230 1.45073 1.31905 1.07684 1.19348 0.94389 0.92987 0.80588 1.21443 1.08230 1.14578 1.12334 0.92327 1.24907 0.97674 0.94901 0.96449 1.69927 1.39777 1.22758 1.20808 0.86471 0.83387 0.79340 0.78400 1.19795 1.21019 1.20876 1.21297 0.85766 0.89475 1.04348 1.19902 0.92093 0.91513 1.05705 1.29064 0.93800 0.94385 0.92915 1.81188 1.10508 1.11126 1.09269 0.92060 0.91965 0.91511 0.86682 0.88244 0.88791 0.88668 0.88845 0.88895 0.92185 0.88659 0.92044 0.85882 0.94512 0.92517 0.87918 0.94778 0.93566 0.92734 0.88660 0.90762 0.87882 0.86429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.73 6.25 37.16 0.23 -1.49 16 2 C 0.11 1.12 0.54 -131.49 -0.07 1.05 16 3 C -0.14 -1.34 3.97 -90.62 -0.36 -1.70 16 4 C -0.18 -1.51 9.50 -26.73 -0.25 -1.77 16 5 C -0.18 -1.35 9.43 -26.73 -0.25 -1.60 16 6 C 0.08 0.86 5.42 37.21 0.20 1.06 16 7 O -0.39 -4.79 10.28 -35.23 -0.36 -5.15 16 8 C 0.07 0.80 7.01 37.21 0.26 1.06 16 9 C 0.00 0.00 4.80 -3.72 -0.02 -0.02 16 10 N -0.50 -6.63 4.37 -220.09 -0.96 -7.59 16 11 C 0.03 0.44 3.37 -4.97 -0.02 0.42 16 12 C 0.51 8.95 7.21 -10.98 -0.08 8.87 16 13 O -0.52 -11.28 13.43 5.55 0.07 -11.21 16 14 N -0.60 -10.48 2.46 -175.05 -0.43 -10.91 16 15 C 0.25 5.65 5.16 -5.19 -0.03 5.62 16 16 C -0.53 -13.82 9.39 -34.44 -0.32 -14.14 16 17 H 0.06 1.55 7.81 -52.49 -0.41 1.14 16 18 C 0.06 1.70 5.46 -17.82 -0.10 1.61 16 19 N -0.89 -25.17 13.29 55.43 0.74 -24.44 16 20 Si 0.90 21.06 29.54 -169.99 -5.02 16.04 16 21 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 22 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 23 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 24 C 0.12 1.52 5.07 -4.04 -0.02 1.49 16 25 C -0.05 -0.51 5.96 -29.52 -0.18 -0.69 16 26 C 0.22 2.55 15.43 -20.78 -0.32 2.23 16 27 N -0.44 -6.37 18.53 42.13 0.78 -5.59 16 28 H 0.06 0.56 5.54 -51.93 -0.29 0.28 16 29 H 0.06 0.53 7.18 -51.93 -0.37 0.16 16 30 H 0.07 0.71 6.07 -51.93 -0.31 0.40 16 31 H 0.12 1.25 7.98 -51.93 -0.41 0.84 16 32 H 0.10 0.80 5.82 -51.93 -0.30 0.49 16 33 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.09 0.66 7.13 -51.93 -0.37 0.29 16 36 H 0.09 0.83 7.14 -51.93 -0.37 0.46 16 37 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 39 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 40 H 0.12 2.01 5.20 -51.93 -0.27 1.74 16 41 H 0.04 0.46 6.39 -51.92 -0.33 0.13 16 42 H 0.06 0.62 4.98 -51.93 -0.26 0.36 16 43 H 0.10 1.27 6.57 -51.93 -0.34 0.93 16 44 H 0.03 0.78 8.07 -51.93 -0.42 0.36 16 45 H 0.05 1.22 7.42 -51.93 -0.39 0.83 16 46 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 47 H 0.10 1.32 8.07 -51.93 -0.42 0.90 16 48 H 0.07 0.80 6.64 -51.93 -0.34 0.46 16 49 H 0.10 0.87 7.11 -51.93 -0.37 0.50 16 50 H 0.12 1.18 8.14 -51.93 -0.42 0.76 16 LS Contribution 389.45 15.07 5.87 5.87 Total: -1.00 -31.59 389.45 -8.29 -39.88 By element: Atomic # 1 Polarization: 8.74 SS G_CDS: -7.65 Total: 1.09 kcal Atomic # 6 Polarization: 3.33 SS G_CDS: -1.32 Total: 2.01 kcal Atomic # 7 Polarization: -48.65 SS G_CDS: 0.13 Total: -48.53 kcal Atomic # 8 Polarization: -16.07 SS G_CDS: -0.29 Total: -16.36 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -31.59 -8.29 -39.88 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000934481833.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.185 kcal (2) G-P(sol) polarization free energy of solvation -31.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.876 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds