Wall clock time and date at job start Tue Mar 31 2020 20:00:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52994 * 109.50766 * 2 1 4 4 C 1.53001 * 117.50235 * 3.70076 * 3 2 1 5 5 C 1.52998 * 60.00071 * 252.51671 * 4 3 2 6 6 C 1.53100 * 109.50483 * 239.86228 * 2 1 3 7 7 O 1.43014 * 109.25964 * 296.91504 * 6 2 1 8 8 C 1.43018 * 113.73901 * 301.33200 * 7 6 2 9 9 C 1.53094 * 109.25762 * 58.66979 * 8 7 6 10 10 N 1.47007 * 109.26076 * 303.14842 * 9 8 7 11 11 C 1.46906 * 111.00287 * 182.39030 * 10 9 8 12 12 C 1.50702 * 109.46617 * 55.53557 * 11 10 9 13 13 O 1.21283 * 120.00149 * 7.43612 * 12 11 10 14 14 N 1.34780 * 119.99881 * 187.43887 * 12 11 10 15 15 C 1.46500 * 120.00028 * 180.02562 * 14 12 11 16 16 C 1.50698 * 109.47351 * 89.99879 * 15 14 12 17 17 H 1.08002 * 119.99515 * 359.97438 * 16 15 14 18 18 C 1.37875 * 120.00128 * 179.97438 * 16 15 14 19 19 N 1.31520 * 119.99885 * 0.02562 * 18 16 15 20 20 Si 1.86802 * 119.99930 * 179.97438 * 18 16 15 21 21 H 1.48494 * 109.47309 * 0.02562 * 20 18 16 22 22 H 1.48502 * 109.46586 * 120.00577 * 20 18 16 23 23 H 1.48499 * 109.47093 * 239.99921 * 20 18 16 24 24 C 1.46502 * 119.99669 * 359.97438 * 14 12 11 25 25 C 1.53002 * 109.47012 * 90.00308 * 24 14 12 26 26 C 1.47201 * 109.47080 * 179.97438 * 25 24 14 27 27 N 6.91374 * 56.58526 * 66.89984 * 2 1 3 28 28 H 1.09003 * 109.47066 * 299.92289 * 1 2 3 29 29 H 1.09007 * 109.47086 * 59.91578 * 1 2 3 30 30 H 1.08992 * 109.47506 * 179.91771 * 1 2 3 31 31 H 1.08997 * 115.55292 * 149.41951 * 3 2 1 32 32 H 1.08997 * 117.49608 * 0.02562 * 4 3 2 33 33 H 1.09000 * 117.49685 * 145.02668 * 4 3 2 34 34 H 1.09000 * 117.49739 * 252.50487 * 5 4 3 35 35 H 1.09005 * 117.50060 * 107.49341 * 5 4 3 36 36 H 1.08994 * 109.50181 * 56.85536 * 6 2 1 37 37 H 1.09001 * 109.49939 * 176.93683 * 6 2 1 38 38 H 1.09002 * 109.50583 * 178.60183 * 8 7 6 39 39 H 1.08997 * 109.50519 * 298.69145 * 8 7 6 40 40 H 1.09005 * 109.50615 * 183.20978 * 9 8 7 41 41 H 1.09008 * 109.51059 * 63.08686 * 9 8 7 42 42 H 1.08997 * 109.47087 * 295.53626 * 11 10 9 43 43 H 1.09004 * 109.47168 * 175.53287 * 11 10 9 44 44 H 1.09004 * 109.46512 * 210.00079 * 15 14 12 45 45 H 1.09005 * 109.46940 * 329.99585 * 15 14 12 46 46 H 0.96996 * 119.99748 * 179.97438 * 19 18 16 47 47 H 1.09003 * 109.47072 * 209.99837 * 24 14 12 48 48 H 1.08997 * 109.47353 * 330.00131 * 24 14 12 49 49 H 1.08998 * 109.46858 * 300.00165 * 25 24 14 50 50 H 1.09006 * 109.46984 * 59.99736 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0409 1.4421 0.0000 4 6 1.0003 2.5603 0.0876 5 6 1.7345 2.3000 -1.2292 6 6 2.0412 -0.7246 -1.2481 7 8 1.6226 -2.0914 -1.2046 8 6 2.0836 -2.7983 -0.0500 9 6 1.5728 -2.0948 1.2101 10 7 2.0209 -0.6947 1.1992 11 6 1.5988 0.0027 2.4213 12 6 2.1020 -0.7480 3.6272 13 8 2.8593 -1.6848 3.4859 14 7 1.7104 -0.3785 4.8628 15 6 2.2000 -1.1080 6.0351 16 6 3.4768 -0.4741 6.5242 17 1 3.8831 0.3859 6.0125 18 6 4.1261 -0.9920 7.6247 19 7 3.6315 -2.0396 8.2474 20 14 5.7091 -0.2067 8.2304 21 1 6.0519 0.9489 7.3630 22 1 5.5263 0.2609 9.6280 23 1 6.8071 -1.2053 8.1822 24 6 0.7961 0.7534 5.0335 25 6 -0.6487 0.2507 5.0041 26 6 -1.5674 1.3879 5.1762 27 7 -2.2774 2.2642 5.3082 28 1 -0.3633 0.5126 0.8907 29 1 -0.3633 0.5152 -0.8893 30 1 -0.3634 -1.0276 -0.0015 31 1 2.9959 1.6026 0.5003 32 1 -0.0483 2.2685 0.1457 33 1 1.2706 3.4567 0.6458 34 1 2.4877 3.0252 -1.5373 35 1 1.1689 1.8371 -2.0379 36 1 1.6332 -0.2470 -2.1388 37 1 3.1298 -0.6773 -1.2760 38 1 1.7062 -3.8206 -0.0744 39 1 3.1735 -2.8127 -0.0432 40 1 1.9686 -2.5968 2.0930 41 1 0.4834 -2.1282 1.2295 42 1 0.5105 0.0538 2.4531 43 1 2.0102 1.0122 2.4240 44 1 1.4501 -1.0710 6.8253 45 1 2.3907 -2.1463 5.7635 46 1 4.0885 -2.4041 9.0213 47 1 0.9927 1.2382 5.9897 48 1 0.9484 1.4686 4.2253 49 1 -0.8453 -0.2342 4.0479 50 1 -0.8010 -0.4646 5.8124 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000934481833.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:00:39 Heat of formation + Delta-G solvation = -22.940367 kcal Electronic energy + Delta-G solvation = -30854.419350 eV Core-core repulsion = 26882.803941 eV Total energy + Delta-G solvation = -3971.615408 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.82856 -40.37685 -38.23423 -38.02199 -36.81169 -36.03522 -34.83379 -32.33943 -32.11789 -30.88296 -29.08596 -28.13077 -26.22853 -25.42159 -25.30738 -24.04888 -22.99766 -22.11300 -20.07771 -19.26419 -18.82326 -18.33461 -18.25542 -17.54846 -17.19910 -16.94943 -16.60125 -16.22143 -16.17023 -16.02130 -15.71623 -15.42737 -15.12856 -14.74099 -14.63248 -14.37146 -14.26861 -13.93033 -13.61076 -13.59660 -13.52749 -13.26851 -13.13625 -12.94512 -12.90130 -12.70300 -12.53626 -12.51504 -12.20980 -12.15882 -12.09918 -11.93713 -11.86782 -11.61384 -11.38912 -11.14785 -11.07646 -10.57868 -10.54338 -10.22484 -9.46017 -9.15808 -8.16950 -6.28537 1.39183 1.42235 1.52161 1.66831 1.82540 1.89586 2.19653 2.43917 2.76089 2.93384 2.96563 3.12857 3.16391 3.72913 3.77566 3.89138 3.99707 4.03790 4.09061 4.11980 4.15641 4.24584 4.26942 4.32624 4.39026 4.47293 4.54171 4.59658 4.73114 4.79281 4.81735 4.83184 4.87820 4.91388 5.02139 5.03560 5.05269 5.11761 5.15346 5.28022 5.34569 5.35825 5.39263 5.63544 5.87880 5.95763 6.11962 6.14906 6.24375 6.58681 6.77184 6.83739 7.36700 7.55819 8.89746 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.010161 B = 0.003885 C = 0.003341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2754.993160 B = 7204.854669 C = 8379.646906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.111 3.889 3 C -0.155 4.155 4 C -0.178 4.178 5 C -0.164 4.164 6 C 0.076 3.924 7 O -0.394 6.394 8 C 0.069 3.931 9 C 0.006 3.994 10 N -0.522 5.522 11 C 0.049 3.951 12 C 0.502 3.498 13 O -0.566 6.566 14 N -0.597 5.597 15 C 0.262 3.738 16 C -0.536 4.536 17 H 0.052 0.948 18 C 0.013 3.987 19 N -0.925 5.925 20 Si 0.955 3.045 21 H -0.269 1.269 22 H -0.274 1.274 23 H -0.286 1.286 24 C 0.114 3.886 25 C -0.038 4.038 26 C 0.245 3.755 27 N -0.485 5.485 28 H 0.068 0.932 29 H 0.077 0.923 30 H 0.055 0.945 31 H 0.097 0.903 32 H 0.107 0.893 33 H 0.097 0.903 34 H 0.101 0.899 35 H 0.105 0.895 36 H 0.116 0.884 37 H 0.049 0.951 38 H 0.110 0.890 39 H 0.047 0.953 40 H 0.091 0.909 41 H 0.047 0.953 42 H 0.087 0.913 43 H 0.115 0.885 44 H 0.034 0.966 45 H 0.005 0.995 46 H 0.265 0.735 47 H 0.085 0.915 48 H 0.103 0.897 49 H 0.130 0.870 50 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.598 6.383 -18.649 21.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.021 3.979 3 C -0.174 4.174 4 C -0.214 4.214 5 C -0.201 4.201 6 C -0.001 4.001 7 O -0.312 6.312 8 C -0.008 4.008 9 C -0.122 4.122 10 N -0.247 5.247 11 C -0.081 4.081 12 C 0.291 3.709 13 O -0.445 6.445 14 N -0.329 5.329 15 C 0.141 3.859 16 C -0.575 4.575 17 H 0.070 0.930 18 C -0.186 4.186 19 N -0.566 5.566 20 Si 0.781 3.219 21 H -0.193 1.193 22 H -0.199 1.199 23 H -0.212 1.212 24 C -0.011 4.011 25 C -0.079 4.079 26 C -0.073 4.073 27 N -0.163 5.163 28 H 0.087 0.913 29 H 0.096 0.904 30 H 0.074 0.926 31 H 0.116 0.884 32 H 0.125 0.875 33 H 0.115 0.885 34 H 0.119 0.881 35 H 0.123 0.877 36 H 0.134 0.866 37 H 0.068 0.932 38 H 0.128 0.872 39 H 0.065 0.935 40 H 0.109 0.891 41 H 0.066 0.934 42 H 0.104 0.896 43 H 0.133 0.867 44 H 0.052 0.948 45 H 0.023 0.977 46 H 0.074 0.926 47 H 0.103 0.897 48 H 0.121 0.879 49 H 0.148 0.852 50 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -8.822 6.991 -18.518 21.671 hybrid contribution 0.786 -0.246 1.223 1.475 sum -8.036 6.745 -17.295 20.229 Atomic orbital electron populations 1.22470 0.95220 1.02425 1.03273 1.21197 0.93778 0.92547 0.90353 1.22091 1.00548 0.89885 1.04884 1.23231 0.98070 0.99148 1.00983 1.23032 1.03427 1.02123 0.91504 1.22758 0.99072 0.81190 0.97111 1.87931 1.76098 1.23702 1.43477 1.22631 0.98633 0.95994 0.83522 1.23056 0.98521 0.89706 1.00904 1.62059 1.59937 1.01889 1.00862 1.22045 1.00369 0.98510 0.87170 1.21053 0.80794 0.84228 0.84871 1.90595 1.36756 1.31291 1.85840 1.48088 1.45753 1.32668 1.06361 1.18786 0.93526 0.91308 0.82317 1.21766 1.09394 1.14240 1.12126 0.92996 1.25677 1.00631 0.95426 0.96893 1.70025 1.41161 1.24001 1.21368 0.85551 0.79645 0.78423 0.78293 1.19335 1.19928 1.21172 1.21502 0.86253 0.88291 1.05079 1.19816 0.89790 0.90883 1.07406 1.29066 0.92999 0.93677 0.91531 1.81232 1.11876 1.12326 1.10824 0.91283 0.90368 0.92565 0.88440 0.87500 0.88503 0.88050 0.87703 0.86618 0.93245 0.87203 0.93495 0.89143 0.93445 0.89577 0.86711 0.94836 0.97665 0.92640 0.89651 0.87913 0.85189 0.86080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.77 6.25 71.98 0.45 -2.32 16 2 C 0.11 2.10 0.54 3.54 0.00 2.10 16 3 C -0.16 -2.58 3.97 -10.80 -0.04 -2.62 16 4 C -0.18 -2.29 9.50 30.59 0.29 -2.00 16 5 C -0.16 -1.98 9.43 30.59 0.29 -1.69 16 6 C 0.08 1.49 5.42 72.02 0.39 1.88 16 7 O -0.39 -9.20 10.28 -148.98 -1.53 -10.74 16 8 C 0.07 1.68 7.01 72.01 0.50 2.19 16 9 C 0.01 0.15 4.80 86.31 0.41 0.57 16 10 N -0.52 -13.28 4.37 -850.24 -3.71 -17.00 16 11 C 0.05 1.20 3.37 85.56 0.29 1.49 16 12 C 0.50 17.70 7.21 87.66 0.63 18.34 16 13 O -0.57 -25.78 13.43 -3.04 -0.04 -25.83 16 14 N -0.60 -20.85 2.46 -826.13 -2.03 -22.88 16 15 C 0.26 12.37 5.16 85.63 0.44 12.82 16 16 C -0.54 -28.65 9.39 25.60 0.24 -28.41 16 17 H 0.05 2.78 7.81 -2.91 -0.02 2.75 16 18 C 0.01 0.70 5.46 84.65 0.46 1.17 16 19 N -0.93 -53.22 13.29 21.45 0.28 -52.93 16 20 Si 0.96 43.54 29.54 68.60 2.03 45.56 16 21 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 22 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 23 H -0.29 -13.08 7.11 99.48 0.71 -12.37 16 24 C 0.11 2.71 5.07 86.38 0.44 3.15 16 25 C -0.04 -0.67 5.96 28.79 0.17 -0.50 16 26 C 0.24 5.15 15.43 89.45 1.38 6.53 16 27 N -0.48 -12.99 18.53 20.00 0.37 -12.62 16 28 H 0.07 0.98 5.54 -2.39 -0.01 0.96 16 29 H 0.08 1.00 7.18 -2.38 -0.02 0.99 16 30 H 0.06 1.03 6.07 -2.39 -0.01 1.02 16 31 H 0.10 1.99 7.98 -2.39 -0.02 1.97 16 32 H 0.11 1.25 5.82 -2.39 -0.01 1.23 16 33 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 34 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 35 H 0.10 1.05 7.13 -2.38 -0.02 1.03 16 36 H 0.12 1.72 7.14 -2.39 -0.02 1.70 16 37 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 38 H 0.11 2.28 8.14 -2.39 -0.02 2.26 16 39 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 40 H 0.09 3.08 5.20 -2.38 -0.01 3.07 16 41 H 0.05 1.14 6.39 -2.38 -0.02 1.12 16 42 H 0.09 1.58 4.98 -2.39 -0.01 1.57 16 43 H 0.12 2.57 6.57 -2.38 -0.02 2.55 16 44 H 0.03 1.58 8.07 -2.39 -0.02 1.56 16 45 H 0.01 0.29 7.42 -2.38 -0.02 0.27 16 46 H 0.26 14.42 8.31 -92.71 -0.77 13.65 16 47 H 0.09 2.25 8.07 -2.39 -0.02 2.23 16 48 H 0.10 1.89 6.64 -2.39 -0.02 1.88 16 49 H 0.13 1.70 7.11 -2.39 -0.02 1.68 16 50 H 0.12 2.20 8.14 -2.38 -0.02 2.18 16 Total: -1.00 -71.02 389.45 2.67 -68.35 By element: Atomic # 1 Polarization: 14.45 SS G_CDS: 0.95 Total: 15.41 kcal Atomic # 6 Polarization: 6.32 SS G_CDS: 6.35 Total: 12.68 kcal Atomic # 7 Polarization: -100.35 SS G_CDS: -5.09 Total: -105.44 kcal Atomic # 8 Polarization: -34.99 SS G_CDS: -1.57 Total: -36.56 kcal Atomic # 14 Polarization: 43.54 SS G_CDS: 2.03 Total: 45.56 kcal Total: -71.02 2.67 -68.35 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000934481833.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.409 kcal (2) G-P(sol) polarization free energy of solvation -71.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.349 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds