Wall clock time and date at job start Tue Mar 31 2020 20:02:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 N 1.33700 * 126.27297 * 2 1 4 4 C 1.30613 * 108.99368 * 180.26869 * 3 2 1 5 5 C 1.50701 * 125.42302 * 179.70785 * 4 3 2 6 6 C 1.52999 * 109.47146 * 90.02421 * 5 4 3 7 7 C 1.53004 * 109.47219 * 175.00196 * 6 5 4 8 8 C 1.53002 * 109.47481 * 295.00394 * 6 5 4 9 9 O 1.33662 * 109.15772 * 359.73023 * 4 3 2 10 10 C 1.35350 * 107.68456 * 359.97438 * 9 4 3 11 11 C 1.46723 * 126.64287 * 179.97438 * 10 9 4 12 12 O 1.21685 * 119.99146 * 180.02562 * 11 10 9 13 13 N 1.34769 * 120.00377 * 0.02639 * 11 10 9 14 14 C 1.47026 * 125.65110 * 179.97438 * 13 11 10 15 15 C 1.54319 * 107.27208 * 178.97664 * 14 13 11 16 16 H 1.09006 * 110.71995 * 96.35041 * 15 14 13 17 17 C 1.52997 * 110.72218 * 219.44641 * 15 14 13 18 18 C 1.55161 * 103.10429 * 337.90260 * 15 14 13 19 19 H 1.09004 * 111.00245 * 277.33882 * 18 15 14 20 20 N 1.46492 * 111.00581 * 153.48797 * 18 15 14 21 21 C 1.36938 * 120.00078 * 154.99851 * 20 18 15 22 22 H 1.07993 * 119.99988 * 359.97438 * 21 20 18 23 23 C 1.38817 * 119.99870 * 179.97438 * 21 20 18 24 24 N 1.31624 * 119.99910 * 179.97438 * 23 21 20 25 25 Si 1.86796 * 120.00187 * 359.97438 * 23 21 20 26 26 H 1.48498 * 109.47192 * 89.99772 * 25 23 21 27 27 H 1.48506 * 109.47232 * 209.99827 * 25 23 21 28 28 H 1.48499 * 109.47313 * 329.99902 * 25 23 21 29 29 C 1.47428 * 125.64776 * 0.04328 * 13 11 10 30 30 H 1.09009 * 109.47298 * 270.18850 * 1 2 3 31 31 H 1.08994 * 109.47601 * 30.18942 * 1 2 3 32 32 H 1.09002 * 109.46996 * 150.19481 * 1 2 3 33 33 H 1.08995 * 109.47254 * 210.02536 * 5 4 3 34 34 H 1.08998 * 109.47168 * 330.02460 * 5 4 3 35 35 H 1.09010 * 109.47097 * 55.00331 * 6 5 4 36 36 H 1.08997 * 109.47270 * 59.99920 * 7 6 5 37 37 H 1.09003 * 109.46960 * 180.02562 * 7 6 5 38 38 H 1.09005 * 109.46727 * 299.99802 * 7 6 5 39 39 H 1.08993 * 109.46907 * 59.99611 * 8 6 5 40 40 H 1.08997 * 109.47125 * 180.02562 * 8 6 5 41 41 H 1.08997 * 109.46641 * 299.99855 * 8 6 5 42 42 H 1.09001 * 109.87716 * 59.56350 * 14 13 11 43 43 H 1.08997 * 110.00821 * 298.47521 * 14 13 11 44 44 H 1.09002 * 109.47153 * 56.15860 * 17 15 14 45 45 H 1.09001 * 109.46832 * 296.16051 * 17 15 14 46 46 H 1.09004 * 109.47261 * 176.16032 * 17 15 14 47 47 H 0.97004 * 120.00365 * 334.99678 * 20 18 15 48 48 H 0.96995 * 120.00261 * 180.02562 * 24 23 21 49 49 H 1.09003 * 110.36619 * 322.92711 * 29 13 11 50 50 H 1.09004 * 110.37083 * 85.14196 * 29 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2979 1.0779 0.0000 4 6 3.5451 0.6900 -0.0058 5 6 4.7439 1.6031 -0.0141 6 6 5.1576 1.9147 1.4256 7 6 6.4468 2.7388 1.4189 8 6 4.0472 2.7106 2.1146 9 8 3.5889 -0.6459 -0.0037 10 6 2.3136 -1.0992 0.0042 11 6 1.8827 -2.5017 0.0086 12 8 0.6966 -2.7736 0.0153 13 7 2.8004 -3.4887 0.0051 14 6 2.5090 -4.9297 0.0093 15 6 3.8621 -5.6709 -0.0234 16 1 4.1696 -5.9569 0.9825 17 6 3.7851 -6.8986 -0.9332 18 6 4.8298 -4.6107 -0.6126 19 1 4.7713 -4.5904 -1.7008 20 7 6.2048 -4.8496 -0.1671 21 6 7.2564 -4.4005 -0.9205 22 1 7.0721 -3.8706 -1.8432 23 6 8.5593 -4.6265 -0.4981 24 7 9.5701 -4.1952 -1.2225 25 14 8.8780 -5.5425 1.0983 26 1 8.9788 -6.9981 0.8222 27 1 10.1490 -5.0634 1.6987 28 1 7.7597 -5.2943 2.0433 29 6 4.2628 -3.3021 -0.0021 30 1 -0.3634 0.0034 1.0277 31 1 -0.3634 0.8882 -0.5167 32 1 -0.3633 -0.8917 -0.5108 33 1 5.5693 1.1145 -0.5316 34 1 4.4908 2.5304 -0.5281 35 1 5.3250 0.9826 1.9654 36 1 6.2794 3.6708 0.8791 37 1 6.7417 2.9603 2.4446 38 1 7.2378 2.1717 0.9281 39 1 3.1289 2.1235 2.1193 40 1 4.3422 2.9329 3.1400 41 1 3.8799 3.6426 1.5748 42 1 1.9216 -5.1916 -0.8707 43 1 1.9616 -5.1969 0.9132 44 1 3.4646 -6.5931 -1.9293 45 1 3.0685 -7.6102 -0.5232 46 1 4.7674 -7.3670 -0.9954 47 1 6.3704 -5.3260 0.6615 48 1 10.4805 -4.3534 -0.9276 49 1 4.5330 -2.4459 -0.6202 50 1 4.6331 -3.1673 1.0143 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000939285162.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:02:06 Heat of formation + Delta-G solvation = -13.753522 kcal Electronic energy + Delta-G solvation = -30111.844856 eV Core-core repulsion = 26140.627819 eV Total energy + Delta-G solvation = -3971.217037 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -43.46757 -39.86981 -37.81653 -36.75191 -35.32982 -34.26258 -32.69078 -31.79019 -31.10732 -28.76195 -28.10484 -27.76044 -27.29741 -25.84328 -23.89118 -22.42955 -21.79160 -21.30163 -20.30646 -20.18377 -19.81591 -17.66993 -17.38398 -17.02862 -16.24638 -16.00492 -15.55262 -15.42252 -14.67183 -14.34635 -14.25178 -14.06362 -13.65315 -13.39646 -13.36835 -13.27719 -13.09900 -12.98718 -12.77843 -12.70758 -12.46853 -12.31929 -12.10291 -11.98807 -11.86002 -11.48604 -11.40849 -11.22518 -11.21578 -10.96039 -10.93074 -10.82609 -10.76983 -10.72202 -10.45623 -10.12171 -10.03366 -9.71139 -9.12334 -8.91816 -8.46478 -7.46335 -5.90456 -3.28786 0.82070 2.35230 2.37056 3.05864 3.10840 3.27685 3.30487 3.36923 3.77554 4.43677 4.46785 4.59386 4.61943 4.71816 4.79101 4.92397 4.93007 5.01613 5.21929 5.31555 5.35896 5.38902 5.46544 5.50874 5.51771 5.54370 5.59753 5.61674 5.64003 5.69895 5.70894 5.73562 5.76831 5.83665 5.89336 5.96251 6.02745 6.06803 6.11158 6.15969 6.23214 6.26364 6.30648 6.34843 6.44173 6.66175 7.43034 7.60262 7.83079 8.03380 8.27797 9.03985 9.76110 9.93983 11.27050 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.008605 B = 0.004402 C = 0.003088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3252.991178 B = 6359.565129 C = 9065.074777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.075 3.925 3 N -0.488 5.488 4 C 0.225 3.775 5 C -0.027 4.027 6 C -0.094 4.094 7 C -0.146 4.146 8 C -0.148 4.148 9 O -0.175 6.175 10 C -0.112 4.112 11 C 0.619 3.381 12 O -0.528 6.528 13 N -0.603 5.603 14 C 0.118 3.882 15 C -0.119 4.119 16 H 0.083 0.917 17 C -0.135 4.135 18 C 0.184 3.816 19 H 0.078 0.922 20 N -0.732 5.732 21 C -0.253 4.253 22 H 0.092 0.908 23 C 0.012 3.988 24 N -0.928 5.928 25 Si 0.882 3.118 26 H -0.282 1.282 27 H -0.290 1.290 28 H -0.277 1.277 29 C 0.071 3.929 30 H 0.079 0.921 31 H 0.075 0.925 32 H 0.093 0.907 33 H 0.102 0.898 34 H 0.108 0.892 35 H 0.077 0.923 36 H 0.058 0.942 37 H 0.060 0.940 38 H 0.063 0.937 39 H 0.058 0.942 40 H 0.054 0.946 41 H 0.058 0.942 42 H 0.072 0.928 43 H 0.067 0.933 44 H 0.056 0.944 45 H 0.051 0.949 46 H 0.068 0.932 47 H 0.364 0.636 48 H 0.261 0.739 49 H 0.081 0.919 50 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.201 8.690 4.427 16.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.049 4.049 3 N -0.218 5.218 4 C 0.020 3.980 5 C -0.065 4.065 6 C -0.113 4.113 7 C -0.204 4.204 8 C -0.206 4.206 9 O -0.061 6.061 10 C -0.167 4.167 11 C 0.407 3.593 12 O -0.408 6.408 13 N -0.334 5.334 14 C -0.004 4.004 15 C -0.139 4.139 16 H 0.101 0.899 17 C -0.193 4.193 18 C 0.072 3.928 19 H 0.096 0.904 20 N -0.373 5.373 21 C -0.383 4.383 22 H 0.110 0.890 23 C -0.184 4.184 24 N -0.574 5.574 25 Si 0.712 3.288 26 H -0.209 1.209 27 H -0.216 1.216 28 H -0.203 1.203 29 C -0.054 4.054 30 H 0.097 0.903 31 H 0.094 0.906 32 H 0.112 0.888 33 H 0.120 0.880 34 H 0.126 0.874 35 H 0.095 0.905 36 H 0.077 0.923 37 H 0.079 0.921 38 H 0.082 0.918 39 H 0.077 0.923 40 H 0.073 0.927 41 H 0.078 0.922 42 H 0.090 0.910 43 H 0.086 0.914 44 H 0.075 0.925 45 H 0.070 0.930 46 H 0.087 0.913 47 H 0.198 0.802 48 H 0.071 0.929 49 H 0.099 0.901 50 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -13.786 9.263 4.237 17.141 hybrid contribution 0.758 -1.219 1.234 1.893 sum -13.028 8.045 5.472 16.259 Atomic orbital electron populations 1.20339 0.85507 1.04139 1.03447 1.22008 0.98166 0.86493 0.98259 1.70351 1.00312 1.30878 1.20248 1.26523 0.95506 0.79702 0.96290 1.20416 0.90452 0.96136 0.99490 1.21130 0.96198 1.00178 0.93801 1.21820 0.96293 0.99862 1.02389 1.21883 0.98255 1.00317 1.00101 1.84658 1.29359 1.23274 1.68777 1.22783 0.81466 0.95953 1.16511 1.15973 0.84771 0.81007 0.77557 1.90818 1.15373 1.81944 1.52679 1.48350 1.08052 1.06317 1.70719 1.22035 0.97563 0.78738 1.02076 1.22586 0.94132 0.96269 1.00898 0.89896 1.21676 1.02426 0.96367 0.98794 1.21360 0.84257 0.89482 0.97696 0.90358 1.42631 1.00420 1.68038 1.26191 1.19057 0.84308 1.30934 1.04001 0.89006 1.24658 0.95363 1.00302 0.98100 1.69693 0.98256 1.50540 1.38927 0.86605 0.77473 0.80231 0.84508 1.20873 1.21595 1.20308 1.23651 0.76795 1.02784 1.02215 0.90288 0.90646 0.88794 0.87953 0.87360 0.90471 0.92312 0.92118 0.91840 0.92321 0.92665 0.92250 0.90966 0.91447 0.92487 0.92990 0.91338 0.80212 0.92858 0.90116 0.91266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.93 9.87 36.00 0.36 -0.58 16 2 C 0.08 1.12 7.16 -82.47 -0.59 0.53 16 3 N -0.49 -7.03 10.53 -7.07 -0.07 -7.11 16 4 C 0.23 3.11 6.79 -12.80 -0.09 3.02 16 5 C -0.03 -0.28 5.32 -27.88 -0.15 -0.43 16 6 C -0.09 -0.92 2.91 -90.62 -0.26 -1.18 16 7 C -0.15 -1.21 9.19 37.16 0.34 -0.87 16 8 C -0.15 -1.42 9.00 37.16 0.33 -1.09 16 9 O -0.17 -2.76 8.07 4.41 0.04 -2.73 16 10 C -0.11 -1.80 6.96 -36.84 -0.26 -2.06 16 11 C 0.62 10.33 7.82 -12.84 -0.10 10.23 16 12 O -0.53 -9.30 15.12 5.20 0.08 -9.23 16 13 N -0.60 -9.63 3.33 -171.90 -0.57 -10.20 16 14 C 0.12 1.65 6.47 -3.06 -0.02 1.63 16 15 C -0.12 -1.70 3.19 -88.79 -0.28 -1.99 16 16 H 0.08 1.18 8.00 -51.93 -0.42 0.76 16 17 C -0.14 -1.73 9.14 37.16 0.34 -1.39 16 18 C 0.18 3.27 3.17 -65.66 -0.21 3.06 16 19 H 0.08 1.46 8.00 -51.93 -0.42 1.04 16 20 N -0.73 -15.81 5.06 -51.23 -0.26 -16.06 16 21 C -0.25 -6.63 10.44 -15.06 -0.16 -6.78 16 22 H 0.09 2.59 8.06 -52.49 -0.42 2.17 16 23 C 0.01 0.34 5.50 -17.43 -0.10 0.25 16 24 N -0.93 -27.65 13.97 55.49 0.78 -26.87 16 25 Si 0.88 20.83 27.73 -169.99 -4.71 16.11 16 26 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 27 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 28 H -0.28 -6.14 6.52 56.52 0.37 -5.77 16 29 C 0.07 1.22 5.89 -2.40 -0.01 1.20 16 30 H 0.08 0.87 8.14 -51.92 -0.42 0.45 16 31 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.09 1.20 6.47 -51.93 -0.34 0.86 16 33 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16 34 H 0.11 0.95 8.14 -51.93 -0.42 0.52 16 35 H 0.08 0.86 8.14 -51.92 -0.42 0.44 16 36 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 37 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 38 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.06 0.67 6.81 -51.93 -0.35 0.32 16 40 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.07 0.96 7.80 -51.93 -0.41 0.56 16 43 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 44 H 0.06 0.71 8.12 -51.93 -0.42 0.29 16 45 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 46 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 47 H 0.36 7.76 5.62 -40.82 -0.23 7.53 16 48 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 49 H 0.08 1.46 6.25 -51.93 -0.32 1.14 16 50 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 LS Contribution 400.79 15.07 6.04 6.04 Total: -1.00 -30.74 400.79 -7.96 -38.69 By element: Atomic # 1 Polarization: 16.21 SS G_CDS: -8.41 Total: 7.80 kcal Atomic # 6 Polarization: 4.40 SS G_CDS: -0.85 Total: 3.55 kcal Atomic # 7 Polarization: -60.12 SS G_CDS: -0.13 Total: -60.25 kcal Atomic # 8 Polarization: -12.07 SS G_CDS: 0.11 Total: -11.95 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -4.71 Total: 16.11 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -30.74 -7.96 -38.69 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000939285162.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.941 kcal (2) G-P(sol) polarization free energy of solvation -30.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.694 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds