Wall clock time and date at job start Tue Mar 31 2020 20:02:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 N 1.33700 * 126.27297 * 2 1 4 4 C 1.30613 * 108.99368 * 180.26869 * 3 2 1 5 5 C 1.50701 * 125.42302 * 179.70785 * 4 3 2 6 6 C 1.52999 * 109.47146 * 90.02421 * 5 4 3 7 7 C 1.53004 * 109.47219 * 175.00196 * 6 5 4 8 8 C 1.53002 * 109.47481 * 295.00394 * 6 5 4 9 9 O 1.33662 * 109.15772 * 359.73023 * 4 3 2 10 10 C 1.35350 * 107.68456 * 359.97438 * 9 4 3 11 11 C 1.46723 * 126.64287 * 179.97438 * 10 9 4 12 12 O 1.21685 * 119.99146 * 180.02562 * 11 10 9 13 13 N 1.34769 * 120.00377 * 0.02639 * 11 10 9 14 14 C 1.47026 * 125.65110 * 179.97438 * 13 11 10 15 15 C 1.54319 * 107.27208 * 178.97664 * 14 13 11 16 16 H 1.09006 * 110.71995 * 96.35041 * 15 14 13 17 17 C 1.52997 * 110.72218 * 219.44641 * 15 14 13 18 18 C 1.55161 * 103.10429 * 337.90260 * 15 14 13 19 19 H 1.09004 * 111.00245 * 277.33882 * 18 15 14 20 20 N 1.46492 * 111.00581 * 153.48797 * 18 15 14 21 21 C 1.36938 * 120.00078 * 154.99851 * 20 18 15 22 22 H 1.07993 * 119.99988 * 359.97438 * 21 20 18 23 23 C 1.38817 * 119.99870 * 179.97438 * 21 20 18 24 24 N 1.31624 * 119.99910 * 179.97438 * 23 21 20 25 25 Si 1.86796 * 120.00187 * 359.97438 * 23 21 20 26 26 H 1.48498 * 109.47192 * 89.99772 * 25 23 21 27 27 H 1.48506 * 109.47232 * 209.99827 * 25 23 21 28 28 H 1.48499 * 109.47313 * 329.99902 * 25 23 21 29 29 C 1.47428 * 125.64776 * 0.04328 * 13 11 10 30 30 H 1.09009 * 109.47298 * 270.18850 * 1 2 3 31 31 H 1.08994 * 109.47601 * 30.18942 * 1 2 3 32 32 H 1.09002 * 109.46996 * 150.19481 * 1 2 3 33 33 H 1.08995 * 109.47254 * 210.02536 * 5 4 3 34 34 H 1.08998 * 109.47168 * 330.02460 * 5 4 3 35 35 H 1.09010 * 109.47097 * 55.00331 * 6 5 4 36 36 H 1.08997 * 109.47270 * 59.99920 * 7 6 5 37 37 H 1.09003 * 109.46960 * 180.02562 * 7 6 5 38 38 H 1.09005 * 109.46727 * 299.99802 * 7 6 5 39 39 H 1.08993 * 109.46907 * 59.99611 * 8 6 5 40 40 H 1.08997 * 109.47125 * 180.02562 * 8 6 5 41 41 H 1.08997 * 109.46641 * 299.99855 * 8 6 5 42 42 H 1.09001 * 109.87716 * 59.56350 * 14 13 11 43 43 H 1.08997 * 110.00821 * 298.47521 * 14 13 11 44 44 H 1.09002 * 109.47153 * 56.15860 * 17 15 14 45 45 H 1.09001 * 109.46832 * 296.16051 * 17 15 14 46 46 H 1.09004 * 109.47261 * 176.16032 * 17 15 14 47 47 H 0.97004 * 120.00365 * 334.99678 * 20 18 15 48 48 H 0.96995 * 120.00261 * 180.02562 * 24 23 21 49 49 H 1.09003 * 110.36619 * 322.92711 * 29 13 11 50 50 H 1.09004 * 110.37083 * 85.14196 * 29 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2979 1.0779 0.0000 4 6 3.5451 0.6900 -0.0058 5 6 4.7439 1.6031 -0.0141 6 6 5.1576 1.9147 1.4256 7 6 6.4468 2.7388 1.4189 8 6 4.0472 2.7106 2.1146 9 8 3.5889 -0.6459 -0.0037 10 6 2.3136 -1.0992 0.0042 11 6 1.8827 -2.5017 0.0086 12 8 0.6966 -2.7736 0.0153 13 7 2.8004 -3.4887 0.0051 14 6 2.5090 -4.9297 0.0093 15 6 3.8621 -5.6709 -0.0234 16 1 4.1696 -5.9569 0.9825 17 6 3.7851 -6.8986 -0.9332 18 6 4.8298 -4.6107 -0.6126 19 1 4.7713 -4.5904 -1.7008 20 7 6.2048 -4.8496 -0.1671 21 6 7.2564 -4.4005 -0.9205 22 1 7.0721 -3.8706 -1.8432 23 6 8.5593 -4.6265 -0.4981 24 7 9.5701 -4.1952 -1.2225 25 14 8.8780 -5.5425 1.0983 26 1 8.9788 -6.9981 0.8222 27 1 10.1490 -5.0634 1.6987 28 1 7.7597 -5.2943 2.0433 29 6 4.2628 -3.3021 -0.0021 30 1 -0.3634 0.0034 1.0277 31 1 -0.3634 0.8882 -0.5167 32 1 -0.3633 -0.8917 -0.5108 33 1 5.5693 1.1145 -0.5316 34 1 4.4908 2.5304 -0.5281 35 1 5.3250 0.9826 1.9654 36 1 6.2794 3.6708 0.8791 37 1 6.7417 2.9603 2.4446 38 1 7.2378 2.1717 0.9281 39 1 3.1289 2.1235 2.1193 40 1 4.3422 2.9329 3.1400 41 1 3.8799 3.6426 1.5748 42 1 1.9216 -5.1916 -0.8707 43 1 1.9616 -5.1969 0.9132 44 1 3.4646 -6.5931 -1.9293 45 1 3.0685 -7.6102 -0.5232 46 1 4.7674 -7.3670 -0.9954 47 1 6.3704 -5.3260 0.6615 48 1 10.4805 -4.3534 -0.9276 49 1 4.5330 -2.4459 -0.6202 50 1 4.6331 -3.1673 1.0143 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000939285162.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:02:05 Heat of formation + Delta-G solvation = -33.653071 kcal Electronic energy + Delta-G solvation = -30112.707765 eV Core-core repulsion = 26140.627819 eV Total energy + Delta-G solvation = -3972.079946 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -44.61425 -41.17055 -39.16394 -37.59279 -36.51958 -35.95321 -34.09109 -33.06962 -32.70197 -29.77236 -29.53873 -28.90013 -28.02757 -26.94138 -25.66664 -23.64771 -22.93426 -22.66908 -21.63464 -21.15807 -21.00276 -19.56559 -18.66253 -18.20711 -17.50290 -17.26273 -16.81417 -16.36123 -16.31687 -15.74409 -15.25392 -15.21958 -14.93954 -14.84843 -14.58172 -14.49742 -14.33490 -14.20253 -14.02520 -13.76262 -13.53888 -13.34879 -13.17924 -13.09547 -12.99921 -12.95470 -12.78569 -12.32035 -12.30478 -12.16350 -12.10246 -11.98544 -11.96998 -11.83078 -11.80531 -11.66763 -11.49019 -11.30056 -11.00966 -10.14563 -9.72777 -9.37097 -8.02427 -5.38579 -0.36209 1.21952 1.23632 1.39980 1.42525 1.49344 1.83291 1.85277 2.48261 2.73050 3.16576 3.26963 3.56739 3.58272 3.63936 3.77691 3.78977 3.89556 3.98879 4.01706 4.23392 4.26885 4.33971 4.37276 4.51691 4.54619 4.59836 4.63348 4.65420 4.68765 4.78199 4.81088 4.82477 4.85705 4.90531 4.98906 5.00610 5.04107 5.04774 5.09770 5.20675 5.25312 5.27719 5.38193 5.41579 5.43186 5.75566 6.13609 6.20460 6.43391 6.75764 7.04952 7.77399 7.97664 9.18330 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.008605 B = 0.004402 C = 0.003088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3252.991178 B = 6359.565129 C = 9065.074777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.079 3.921 3 N -0.495 5.495 4 C 0.230 3.770 5 C -0.028 4.028 6 C -0.091 4.091 7 C -0.142 4.142 8 C -0.143 4.143 9 O -0.191 6.191 10 C -0.144 4.144 11 C 0.618 3.382 12 O -0.540 6.540 13 N -0.604 5.604 14 C 0.118 3.882 15 C -0.106 4.106 16 H 0.092 0.908 17 C -0.132 4.132 18 C 0.177 3.823 19 H 0.066 0.934 20 N -0.732 5.732 21 C -0.235 4.235 22 H 0.058 0.942 23 C -0.052 4.052 24 N -0.979 5.979 25 Si 0.949 3.051 26 H -0.277 1.277 27 H -0.299 1.299 28 H -0.251 1.251 29 C 0.086 3.914 30 H 0.091 0.909 31 H 0.093 0.907 32 H 0.086 0.914 33 H 0.104 0.896 34 H 0.130 0.870 35 H 0.058 0.942 36 H 0.074 0.926 37 H 0.066 0.934 38 H 0.056 0.944 39 H 0.037 0.963 40 H 0.063 0.937 41 H 0.071 0.929 42 H 0.082 0.918 43 H 0.083 0.917 44 H 0.057 0.943 45 H 0.080 0.920 46 H 0.053 0.947 47 H 0.370 0.630 48 H 0.258 0.742 49 H 0.065 0.935 50 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.672 8.648 5.893 18.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.046 4.046 3 N -0.225 5.225 4 C 0.025 3.975 5 C -0.066 4.066 6 C -0.110 4.110 7 C -0.200 4.200 8 C -0.200 4.200 9 O -0.078 6.078 10 C -0.198 4.198 11 C 0.407 3.593 12 O -0.421 6.421 13 N -0.335 5.335 14 C -0.003 4.003 15 C -0.125 4.125 16 H 0.110 0.890 17 C -0.189 4.189 18 C 0.067 3.933 19 H 0.084 0.916 20 N -0.374 5.374 21 C -0.365 4.365 22 H 0.076 0.924 23 C -0.245 4.245 24 N -0.628 5.628 25 Si 0.776 3.224 26 H -0.203 1.203 27 H -0.225 1.225 28 H -0.176 1.176 29 C -0.040 4.040 30 H 0.109 0.891 31 H 0.112 0.888 32 H 0.105 0.895 33 H 0.122 0.878 34 H 0.148 0.852 35 H 0.077 0.923 36 H 0.093 0.907 37 H 0.085 0.915 38 H 0.075 0.925 39 H 0.056 0.944 40 H 0.082 0.918 41 H 0.090 0.910 42 H 0.100 0.900 43 H 0.102 0.898 44 H 0.076 0.924 45 H 0.099 0.901 46 H 0.073 0.927 47 H 0.204 0.796 48 H 0.067 0.933 49 H 0.083 0.917 50 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -15.330 9.208 5.714 18.774 hybrid contribution 1.145 -1.091 0.698 1.728 sum -14.185 8.117 6.412 17.556 Atomic orbital electron populations 1.20411 0.83708 1.04632 1.04347 1.22500 0.99361 0.86199 0.96511 1.70406 1.00490 1.30660 1.20974 1.27302 0.96409 0.79369 0.94451 1.20676 0.89310 0.96310 1.00306 1.21104 0.97176 0.99729 0.92989 1.21794 0.95023 1.00116 1.03017 1.21837 0.97028 1.00312 1.00866 1.84644 1.29560 1.24285 1.69345 1.22812 0.81863 0.96179 1.18964 1.16042 0.84667 0.81327 0.77269 1.90799 1.15597 1.82276 1.53418 1.48343 1.07229 1.07238 1.70727 1.22174 0.97426 0.77348 1.03367 1.22515 0.92908 0.95731 1.01373 0.88972 1.21662 1.02469 0.96035 0.98750 1.21478 0.83257 0.91352 0.97253 0.91630 1.42513 1.00899 1.68033 1.25945 1.18966 0.85617 1.29050 1.02891 0.92369 1.25409 0.95106 1.02063 1.01884 1.69870 0.98609 1.53049 1.41303 0.85514 0.77512 0.78781 0.80576 1.20270 1.22550 1.17586 1.23273 0.77774 1.01607 1.01336 0.89051 0.88841 0.89499 0.87773 0.85195 0.92333 0.90695 0.91502 0.92461 0.94420 0.91772 0.91045 0.90006 0.89828 0.92370 0.90110 0.92747 0.79610 0.93273 0.91685 0.91826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.70 9.87 71.23 0.70 -0.99 16 2 C 0.08 2.30 7.16 41.83 0.30 2.60 16 3 N -0.50 -13.95 10.53 -291.07 -3.06 -17.02 16 4 C 0.23 6.30 6.79 88.29 0.60 6.90 16 5 C -0.03 -0.57 5.32 29.85 0.16 -0.41 16 6 C -0.09 -1.70 2.91 -10.79 -0.03 -1.73 16 7 C -0.14 -2.15 9.19 71.98 0.66 -1.49 16 8 C -0.14 -2.56 9.00 71.98 0.65 -1.92 16 9 O -0.19 -6.16 8.07 -7.13 -0.06 -6.22 16 10 C -0.14 -4.64 6.96 24.05 0.17 -4.47 16 11 C 0.62 20.37 7.82 86.46 0.68 21.05 16 12 O -0.54 -18.53 15.12 -4.30 -0.07 -18.60 16 13 N -0.60 -18.84 3.33 -815.98 -2.72 -21.55 16 14 C 0.12 3.05 6.47 86.73 0.56 3.61 16 15 C -0.11 -2.80 3.19 -9.61 -0.03 -2.83 16 16 H 0.09 2.33 8.00 -2.38 -0.02 2.32 16 17 C -0.13 -3.06 9.14 71.98 0.66 -2.40 16 18 C 0.18 6.22 3.17 46.47 0.15 6.37 16 19 H 0.07 2.48 8.00 -2.38 -0.02 2.46 16 20 N -0.73 -31.25 5.06 -316.01 -1.60 -32.85 16 21 C -0.23 -12.49 10.44 84.03 0.88 -11.61 16 22 H 0.06 3.44 8.06 -2.91 -0.02 3.41 16 23 C -0.05 -2.92 5.50 84.86 0.47 -2.45 16 24 N -0.98 -60.01 13.97 21.65 0.30 -59.71 16 25 Si 0.95 42.84 27.73 68.60 1.90 44.74 16 26 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16 27 H -0.30 -13.87 7.11 99.48 0.71 -13.16 16 28 H -0.25 -10.15 6.52 99.48 0.65 -9.50 16 29 C 0.09 2.94 5.89 86.93 0.51 3.45 16 30 H 0.09 1.87 8.14 -2.38 -0.02 1.85 16 31 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 32 H 0.09 2.14 6.47 -2.39 -0.02 2.12 16 33 H 0.10 2.06 8.14 -2.39 -0.02 2.04 16 34 H 0.13 2.04 8.14 -2.39 -0.02 2.02 16 35 H 0.06 1.31 8.14 -2.38 -0.02 1.29 16 36 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 37 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 38 H 0.06 0.94 8.14 -2.38 -0.02 0.92 16 39 H 0.04 0.83 6.81 -2.39 -0.02 0.82 16 40 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 41 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 42 H 0.08 1.98 7.80 -2.39 -0.02 1.96 16 43 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 44 H 0.06 1.33 8.12 -2.39 -0.02 1.31 16 45 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 46 H 0.05 1.43 8.14 -2.38 -0.02 1.41 16 47 H 0.37 15.06 5.62 -92.71 -0.52 14.53 16 48 H 0.26 15.15 8.31 -92.71 -0.77 14.38 16 49 H 0.06 2.43 6.25 -2.39 -0.01 2.42 16 50 H 0.06 2.25 8.14 -2.38 -0.02 2.23 16 Total: -1.00 -67.31 400.79 2.13 -65.18 By element: Atomic # 1 Polarization: 32.00 SS G_CDS: 0.35 Total: 32.35 kcal Atomic # 6 Polarization: 6.60 SS G_CDS: 7.08 Total: 13.67 kcal Atomic # 7 Polarization: -124.05 SS G_CDS: -7.07 Total: -131.13 kcal Atomic # 8 Polarization: -24.69 SS G_CDS: -0.12 Total: -24.81 kcal Atomic # 14 Polarization: 42.84 SS G_CDS: 1.90 Total: 44.74 kcal Total: -67.31 2.13 -65.18 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000939285162.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.526 kcal (2) G-P(sol) polarization free energy of solvation -67.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.179 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds